Details for: CL0000810

Cell ID: CL0000810

Cell Name: CD4-positive, alpha-beta thymocyte

Marker Score Threshold: 558
(Derived using integrated single-cell and genomic data)

Description: An immature alpha-beta T cell that is located in the thymus and is CD4-positive and CD8-negative.

Synonyms: CD4-positive, alpha-beta immature T lymphocyte, CD4-positive, alpha-beta immature T-cell, CD4-positive, alpha-beta immature T-lymphocyte, SP CD4 cell

Genes (max top 100)

(Marker Score score is uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Gene Symbol: ATP5ME (ENSG00000169020)
    Fold Change: 3.91
    Ensembl ID: ENSG00000169020
  • Gene Symbol: ATP5MC2 (ENSG00000135390)
    Fold Change: 3.66
    Ensembl ID: ENSG00000135390
  • Gene Symbol: ACTG1 (ENSG00000184009)
    Fold Change: 3.65
    Ensembl ID: ENSG00000184009
  • Gene Symbol: DDX5 (ENSG00000108654)
    Fold Change: 3.59
    Ensembl ID: ENSG00000108654
  • Gene Symbol: ATP5PF (ENSG00000154723)
    Fold Change: 3.54
    Ensembl ID: ENSG00000154723
  • Gene Symbol: ATP5F1D (ENSG00000099624)
    Fold Change: 3.49
    Ensembl ID: ENSG00000099624
  • Gene Symbol: ATP5F1E (ENSG00000124172)
    Fold Change: 3.43
    Ensembl ID: ENSG00000124172
  • Gene Symbol: CALM2 (ENSG00000143933)
    Fold Change: 3.33
    Ensembl ID: ENSG00000143933
  • Gene Symbol: ATP5MC3 (ENSG00000154518)
    Fold Change: 3.3
    Ensembl ID: ENSG00000154518
  • Gene Symbol: ATP5F1A (ENSG00000152234)
    Fold Change: 3.27
    Ensembl ID: ENSG00000152234
  • Gene Symbol: SEPTIN7 (ENSG00000122545)
    Fold Change: 3.18
    Ensembl ID: ENSG00000122545
  • Gene Symbol: ATP5F1C (ENSG00000165629)
    Fold Change: 2.96
    Ensembl ID: ENSG00000165629
  • Gene Symbol: SLC25A6 (ENSG00000169100)
    Fold Change: 2.94
    Ensembl ID: ENSG00000169100
  • Gene Symbol: ATP5PO (ENSG00000241837)
    Fold Change: 2.94
    Ensembl ID: ENSG00000241837
  • Gene Symbol: ATP5F1B (ENSG00000110955)
    Fold Change: 2.88
    Ensembl ID: ENSG00000110955
  • Gene Symbol: COX7B (ENSG00000131174)
    Fold Change: 2.75
    Ensembl ID: ENSG00000131174
  • Gene Symbol: TLE5 (ENSG00000104964)
    Fold Change: 2.73
    Ensembl ID: ENSG00000104964
  • Gene Symbol: B2M (ENSG00000166710)
    Fold Change: 2.69
    Ensembl ID: ENSG00000166710
  • Gene Symbol: CLIC1 (ENSG00000213719)
    Fold Change: 2.65
    Ensembl ID: ENSG00000213719
  • Gene Symbol: ATP5PB (ENSG00000116459)
    Fold Change: 2.63
    Ensembl ID: ENSG00000116459
  • Gene Symbol: ATP5MC1 (ENSG00000159199)
    Fold Change: 2.48
    Ensembl ID: ENSG00000159199
  • Gene Symbol: ATRX (ENSG00000085224)
    Fold Change: 2.4
    Ensembl ID: ENSG00000085224
  • Gene Symbol: BTG1 (ENSG00000133639)
    Fold Change: 2.34
    Ensembl ID: ENSG00000133639
  • Gene Symbol: ACTB (ENSG00000075624)
    Fold Change: 2.24
    Ensembl ID: ENSG00000075624
  • Gene Symbol: CD52 (ENSG00000169442)
    Fold Change: 2.14
    Ensembl ID: ENSG00000169442
  • Gene Symbol: ZFP36L2 (ENSG00000152518)
    Fold Change: 2.14
    Ensembl ID: ENSG00000152518
  • Gene Symbol: CSNK2B (ENSG00000204435)
    Fold Change: 2.1
    Ensembl ID: ENSG00000204435
  • Gene Symbol: CD63 (ENSG00000135404)
    Fold Change: 2.05
    Ensembl ID: ENSG00000135404
  • Gene Symbol: ATP6V0C (ENSG00000185883)
    Fold Change: 2.04
    Ensembl ID: ENSG00000185883
  • Gene Symbol: COX4I1 (ENSG00000131143)
    Fold Change: 2
    Ensembl ID: ENSG00000131143
  • Gene Symbol: CRIP1 (ENSG00000213145)
    Fold Change: 1.96
    Ensembl ID: ENSG00000213145
  • Gene Symbol: CFL1 (ENSG00000172757)
    Fold Change: 1.95
    Ensembl ID: ENSG00000172757
  • Gene Symbol: COX7C (ENSG00000127184)
    Fold Change: 1.93
    Ensembl ID: ENSG00000127184
  • Gene Symbol: ARHGDIB (ENSG00000111348)
    Fold Change: 1.92
    Ensembl ID: ENSG00000111348
  • Gene Symbol: BTF3 (ENSG00000145741)
    Fold Change: 1.92
    Ensembl ID: ENSG00000145741
  • Gene Symbol: CALM1 (ENSG00000198668)
    Fold Change: 1.88
    Ensembl ID: ENSG00000198668
  • Gene Symbol: CRYAB (ENSG00000109846)
    Fold Change: 1.84
    Ensembl ID: ENSG00000109846
  • Gene Symbol: CD3D (ENSG00000167286)
    Fold Change: 1.81
    Ensembl ID: ENSG00000167286
  • Gene Symbol: CIRBP (ENSG00000099622)
    Fold Change: 1.77
    Ensembl ID: ENSG00000099622
  • Gene Symbol: KLF6 (ENSG00000067082)
    Fold Change: 1.77
    Ensembl ID: ENSG00000067082
  • Gene Symbol: ANXA2 (ENSG00000182718)
    Fold Change: 1.72
    Ensembl ID: ENSG00000182718
  • Gene Symbol: COX6C (ENSG00000164919)
    Fold Change: 1.66
    Ensembl ID: ENSG00000164919
  • Gene Symbol: ATF6B (ENSG00000213676)
    Fold Change: 1.64
    Ensembl ID: ENSG00000213676
  • Gene Symbol: COX7A2 (ENSG00000112695)
    Fold Change: 1.63
    Ensembl ID: ENSG00000112695
  • Gene Symbol: CD3E (ENSG00000198851)
    Fold Change: 1.62
    Ensembl ID: ENSG00000198851
  • Gene Symbol: CALR (ENSG00000179218)
    Fold Change: 1.6
    Ensembl ID: ENSG00000179218
  • Gene Symbol: CD2 (ENSG00000116824)
    Fold Change: 1.54
    Ensembl ID: ENSG00000116824
  • Gene Symbol: CD48 (ENSG00000117091)
    Fold Change: 1.54
    Ensembl ID: ENSG00000117091
  • Gene Symbol: ATP1B3 (ENSG00000069849)
    Fold Change: 1.52
    Ensembl ID: ENSG00000069849
  • Gene Symbol: COMT (ENSG00000093010)
    Fold Change: 1.5
    Ensembl ID: ENSG00000093010
  • Gene Symbol: CRYBG1 (ENSG00000112297)
    Fold Change: 1.49
    Ensembl ID: ENSG00000112297
  • Gene Symbol: CYBA (ENSG00000051523)
    Fold Change: 1.49
    Ensembl ID: ENSG00000051523
  • Gene Symbol: CDC42 (ENSG00000070831)
    Fold Change: 1.49
    Ensembl ID: ENSG00000070831
  • Gene Symbol: CD37 (ENSG00000104894)
    Fold Change: 1.46
    Ensembl ID: ENSG00000104894
  • Gene Symbol: CSNK1A1 (ENSG00000113712)
    Fold Change: 1.44
    Ensembl ID: ENSG00000113712
  • Gene Symbol: ZFP36L1 (ENSG00000185650)
    Fold Change: 1.44
    Ensembl ID: ENSG00000185650
  • Gene Symbol: CAST (ENSG00000153113)
    Fold Change: 1.43
    Ensembl ID: ENSG00000153113
  • Gene Symbol: AP2B1 (ENSG00000006125)
    Fold Change: 1.43
    Ensembl ID: ENSG00000006125
  • Gene Symbol: SLC25A5 (ENSG00000005022)
    Fold Change: 1.43
    Ensembl ID: ENSG00000005022
  • Gene Symbol: RHOA (ENSG00000067560)
    Fold Change: 1.42
    Ensembl ID: ENSG00000067560
  • Gene Symbol: CD44 (ENSG00000026508)
    Fold Change: 1.39
    Ensembl ID: ENSG00000026508
  • Gene Symbol: ALDOA (ENSG00000149925)
    Fold Change: 1.37
    Ensembl ID: ENSG00000149925
  • Gene Symbol: COX6A1 (ENSG00000111775)
    Fold Change: 1.36
    Ensembl ID: ENSG00000111775
  • Gene Symbol: COX6B1 (ENSG00000126267)
    Fold Change: 1.35
    Ensembl ID: ENSG00000126267
  • Gene Symbol: CREM (ENSG00000095794)
    Fold Change: 1.33
    Ensembl ID: ENSG00000095794
  • Gene Symbol: BNIP3 (ENSG00000176171)
    Fold Change: 1.32
    Ensembl ID: ENSG00000176171
  • Gene Symbol: CSTB (ENSG00000160213)
    Fold Change: 1.32
    Ensembl ID: ENSG00000160213
  • Gene Symbol: CD74 (ENSG00000019582)
    Fold Change: 1.31
    Ensembl ID: ENSG00000019582
  • Gene Symbol: CCR7 (ENSG00000126353)
    Fold Change: 1.3
    Ensembl ID: ENSG00000126353
  • Gene Symbol: ANXA5 (ENSG00000164111)
    Fold Change: 1.3
    Ensembl ID: ENSG00000164111
  • Gene Symbol: CAPZB (ENSG00000077549)
    Fold Change: 1.3
    Ensembl ID: ENSG00000077549
  • Gene Symbol: ATP6AP1 (ENSG00000071553)
    Fold Change: 1.27
    Ensembl ID: ENSG00000071553
  • Gene Symbol: GET3 (ENSG00000198356)
    Fold Change: 1.27
    Ensembl ID: ENSG00000198356
  • Gene Symbol: TMEM50B (ENSG00000142188)
    Fold Change: 1.27
    Ensembl ID: ENSG00000142188
  • Gene Symbol: COX5B (ENSG00000135940)
    Fold Change: 1.25
    Ensembl ID: ENSG00000135940
  • Gene Symbol: CD59 (ENSG00000085063)
    Fold Change: 1.24
    Ensembl ID: ENSG00000085063
  • Gene Symbol: APRT (ENSG00000198931)
    Fold Change: 1.23
    Ensembl ID: ENSG00000198931
  • Gene Symbol: DDX3X (ENSG00000215301)
    Fold Change: 1.21
    Ensembl ID: ENSG00000215301
  • Gene Symbol: CD69 (ENSG00000110848)
    Fold Change: 1.21
    Ensembl ID: ENSG00000110848
  • Gene Symbol: ARF1 (ENSG00000143761)
    Fold Change: 1.18
    Ensembl ID: ENSG00000143761
  • Gene Symbol: ABCF1 (ENSG00000204574)
    Fold Change: 1.14
    Ensembl ID: ENSG00000204574
  • Gene Symbol: BIRC3 (ENSG00000023445)
    Fold Change: 1.14
    Ensembl ID: ENSG00000023445
  • Gene Symbol: CST3 (ENSG00000101439)
    Fold Change: 1.14
    Ensembl ID: ENSG00000101439
  • Gene Symbol: CD7 (ENSG00000173762)
    Fold Change: 1.13
    Ensembl ID: ENSG00000173762
  • Gene Symbol: CLK1 (ENSG00000013441)
    Fold Change: 1.12
    Ensembl ID: ENSG00000013441
  • Gene Symbol: CCND3 (ENSG00000112576)
    Fold Change: 1.12
    Ensembl ID: ENSG00000112576
  • Gene Symbol: ARF4 (ENSG00000168374)
    Fold Change: 1.11
    Ensembl ID: ENSG00000168374
  • Gene Symbol: CD53 (ENSG00000143119)
    Fold Change: 1.11
    Ensembl ID: ENSG00000143119
  • Gene Symbol: ANXA1 (ENSG00000135046)
    Fold Change: 1.1
    Ensembl ID: ENSG00000135046
  • Gene Symbol: ARF3 (ENSG00000134287)
    Fold Change: 1.08
    Ensembl ID: ENSG00000134287
  • Gene Symbol: CHD2 (ENSG00000173575)
    Fold Change: 1.08
    Ensembl ID: ENSG00000173575
  • Gene Symbol: DAD1 (ENSG00000129562)
    Fold Change: 1.06
    Ensembl ID: ENSG00000129562
  • Gene Symbol: TMEM258 (ENSG00000134825)
    Fold Change: 1.05
    Ensembl ID: ENSG00000134825
  • Gene Symbol: CD55 (ENSG00000196352)
    Fold Change: 1.04
    Ensembl ID: ENSG00000196352
  • Gene Symbol: CD27 (ENSG00000139193)
    Fold Change: 1.03
    Ensembl ID: ENSG00000139193
  • Gene Symbol: CUX1 (ENSG00000257923)
    Fold Change: 1.03
    Ensembl ID: ENSG00000257923
  • Gene Symbol: COX8A (ENSG00000176340)
    Fold Change: 1.03
    Ensembl ID: ENSG00000176340
  • Gene Symbol: ATP1A1 (ENSG00000163399)
    Fold Change: 1.02
    Ensembl ID: ENSG00000163399
  • Gene Symbol: AMD1 (ENSG00000123505)
    Fold Change: 1.01
    Ensembl ID: ENSG00000123505
  • Gene Symbol: CLDN4 (ENSG00000189143)
    Fold Change: N/A
    Ensembl ID: ENSG00000189143
Hovered Details

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Hovered Details

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**Key Characteristics** * CD4-positive, alpha-beta thymocyte * Immature alpha-beta T cell * CD8-negative * Located in the thymus * Gene symbols: ATP5ME, ATP5MC2, ACTG1, DDX5, and ATP5PF * Pathways and ontology: cristae formation, formation of ATP by chemiosmotic coupling, metabolism, mitochondrial biogenesis, and respiratory electron transport **Clinical Significance** The CD4-positive, alpha-beta thymocyte plays a crucial role in the development of the immune system, particularly in the maturation of T cells. This cell is essential for the proper functioning of the immune system, and any dysfunction or abnormality in this cell can lead to immunodeficiency or autoimmune diseases. The genes involved in this cell, such as ATP5ME and ATP5MC2, are also involved in various cellular processes that are essential for the proper functioning of the immune system. For example, ATP5ME is involved in the formation of ATP by chemiosmotic coupling, which is essential for the proper functioning of mitochondria. Abnormalities in the genes involved in this cell, such as ATP5ME and ATP5MC2, have been associated with various diseases, including immunodeficiency diseases and autoimmune diseases. For example, mutations in the ATP5ME gene have been associated with mitochondrial myopathies, which are a group of diseases that affect the muscles and are characterized by muscle weakness and wasting. In addition, the CD4-positive, alpha-beta thymocyte is also involved in the development of T cells, which are a type of immune cell that plays a crucial role in the immune system. Abnormalities in the development of T cells can lead to immunodeficiency diseases, such as HIV/AIDS, which is a disease caused by the human immunodeficiency virus (HIV). Overall, the CD4-positive, alpha-beta thymocyte is an essential cell in the development of the immune system, and any abnormalities in this cell can lead to immunodeficiency or autoimmune diseases.