Details for: CL0003050

Cell ID: CL0003050

Cell Name: S cone cell

Marker Score Threshold: 301
(Derived using integrated single-cell and genomic data)

Description: A cone cell that detects short wavelength light. Exact peak of spectra detected differs between species. In humans, spectra peaks at 420-440 nm.

Synonyms: S cone, S-(short-wavelength sensitive) cone, S-cone, S-cone photoreceptor, short wavelength sensitive cone, short- (S) wavelength-sensitive cone, short-wavelength sensitive cone, short-wavelength-sensitive (S) cone

Genes (max top 100)

(Marker Score score is uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Gene Symbol: ACTB (ENSG00000075624)
    Fold Change: 3.91
    Ensembl ID: ENSG00000075624
  • Gene Symbol: ACTG1 (ENSG00000184009)
    Fold Change: 3.21
    Ensembl ID: ENSG00000184009
  • Gene Symbol: SLC25A6 (ENSG00000169100)
    Fold Change: 3.16
    Ensembl ID: ENSG00000169100
  • Gene Symbol: CFL1 (ENSG00000172757)
    Fold Change: 3.16
    Ensembl ID: ENSG00000172757
  • Gene Symbol: COX4I1 (ENSG00000131143)
    Fold Change: 3.16
    Ensembl ID: ENSG00000131143
  • Gene Symbol: BTF3 (ENSG00000145741)
    Fold Change: 2.93
    Ensembl ID: ENSG00000145741
  • Gene Symbol: CALM1 (ENSG00000198668)
    Fold Change: 2.9
    Ensembl ID: ENSG00000198668
  • Gene Symbol: CIRBP (ENSG00000099622)
    Fold Change: 2.83
    Ensembl ID: ENSG00000099622
  • Gene Symbol: ATP5MC2 (ENSG00000135390)
    Fold Change: 2.77
    Ensembl ID: ENSG00000135390
  • Gene Symbol: ATP5F1E (ENSG00000124172)
    Fold Change: 2.72
    Ensembl ID: ENSG00000124172
  • Gene Symbol: COX6C (ENSG00000164919)
    Fold Change: 2.71
    Ensembl ID: ENSG00000164919
  • Gene Symbol: BTG1 (ENSG00000133639)
    Fold Change: 2.66
    Ensembl ID: ENSG00000133639
  • Gene Symbol: COX6B1 (ENSG00000126267)
    Fold Change: 2.54
    Ensembl ID: ENSG00000126267
  • Gene Symbol: RHOA (ENSG00000067560)
    Fold Change: 2.5
    Ensembl ID: ENSG00000067560
  • Gene Symbol: CDC42 (ENSG00000070831)
    Fold Change: 2.48
    Ensembl ID: ENSG00000070831
  • Gene Symbol: COX5B (ENSG00000135940)
    Fold Change: 2.41
    Ensembl ID: ENSG00000135940
  • Gene Symbol: CALM2 (ENSG00000143933)
    Fold Change: 2.41
    Ensembl ID: ENSG00000143933
  • Gene Symbol: CD63 (ENSG00000135404)
    Fold Change: 2.4
    Ensembl ID: ENSG00000135404
  • Gene Symbol: KLF6 (ENSG00000067082)
    Fold Change: 2.37
    Ensembl ID: ENSG00000067082
  • Gene Symbol: ARF1 (ENSG00000143761)
    Fold Change: 2.21
    Ensembl ID: ENSG00000143761
  • Gene Symbol: CAPZB (ENSG00000077549)
    Fold Change: 2.18
    Ensembl ID: ENSG00000077549
  • Gene Symbol: SEPTIN7 (ENSG00000122545)
    Fold Change: 2.13
    Ensembl ID: ENSG00000122545
  • Gene Symbol: ATP5PF (ENSG00000154723)
    Fold Change: 2.1
    Ensembl ID: ENSG00000154723
  • Gene Symbol: TMEM258 (ENSG00000134825)
    Fold Change: 2.08
    Ensembl ID: ENSG00000134825
  • Gene Symbol: ATP5MC3 (ENSG00000154518)
    Fold Change: 2.07
    Ensembl ID: ENSG00000154518
  • Gene Symbol: ATP5F1D (ENSG00000099624)
    Fold Change: 2.07
    Ensembl ID: ENSG00000099624
  • Gene Symbol: SLC25A5 (ENSG00000005022)
    Fold Change: 2.06
    Ensembl ID: ENSG00000005022
  • Gene Symbol: ATP5F1B (ENSG00000110955)
    Fold Change: 2.05
    Ensembl ID: ENSG00000110955
  • Gene Symbol: ATP5ME (ENSG00000169020)
    Fold Change: 2.04
    Ensembl ID: ENSG00000169020
  • Gene Symbol: CAST (ENSG00000153113)
    Fold Change: 1.88
    Ensembl ID: ENSG00000153113
  • Gene Symbol: CANX (ENSG00000127022)
    Fold Change: 1.88
    Ensembl ID: ENSG00000127022
  • Gene Symbol: ATF4 (ENSG00000128272)
    Fold Change: 1.85
    Ensembl ID: ENSG00000128272
  • Gene Symbol: BSG (ENSG00000172270)
    Fold Change: 1.84
    Ensembl ID: ENSG00000172270
  • Gene Symbol: ATP5F1A (ENSG00000152234)
    Fold Change: 1.8
    Ensembl ID: ENSG00000152234
  • Gene Symbol: CLTA (ENSG00000122705)
    Fold Change: 1.79
    Ensembl ID: ENSG00000122705
  • Gene Symbol: ATP6V0B (ENSG00000117410)
    Fold Change: 1.74
    Ensembl ID: ENSG00000117410
  • Gene Symbol: ATP5F1C (ENSG00000165629)
    Fold Change: 1.74
    Ensembl ID: ENSG00000165629
  • Gene Symbol: CLK1 (ENSG00000013441)
    Fold Change: 1.7
    Ensembl ID: ENSG00000013441
  • Gene Symbol: ATP5PO (ENSG00000241837)
    Fold Change: 1.68
    Ensembl ID: ENSG00000241837
  • Gene Symbol: ATRX (ENSG00000085224)
    Fold Change: 1.65
    Ensembl ID: ENSG00000085224
  • Gene Symbol: ANXA5 (ENSG00000164111)
    Fold Change: 1.64
    Ensembl ID: ENSG00000164111
  • Gene Symbol: CAPZA2 (ENSG00000198898)
    Fold Change: 1.63
    Ensembl ID: ENSG00000198898
  • Gene Symbol: TLE5 (ENSG00000104964)
    Fold Change: 1.63
    Ensembl ID: ENSG00000104964
  • Gene Symbol: CAPZA1 (ENSG00000116489)
    Fold Change: 1.63
    Ensembl ID: ENSG00000116489
  • Gene Symbol: ATP5PB (ENSG00000116459)
    Fold Change: 1.63
    Ensembl ID: ENSG00000116459
  • Gene Symbol: AP2M1 (ENSG00000161203)
    Fold Change: 1.61
    Ensembl ID: ENSG00000161203
  • Gene Symbol: ACTN4 (ENSG00000130402)
    Fold Change: 1.6
    Ensembl ID: ENSG00000130402
  • Gene Symbol: ARF4 (ENSG00000168374)
    Fold Change: 1.59
    Ensembl ID: ENSG00000168374
  • Gene Symbol: AP2S1 (ENSG00000042753)
    Fold Change: 1.53
    Ensembl ID: ENSG00000042753
  • Gene Symbol: CD47 (ENSG00000196776)
    Fold Change: 1.51
    Ensembl ID: ENSG00000196776
  • Gene Symbol: AMD1 (ENSG00000123505)
    Fold Change: 1.51
    Ensembl ID: ENSG00000123505
  • Gene Symbol: ALDOA (ENSG00000149925)
    Fold Change: 1.48
    Ensembl ID: ENSG00000149925
  • Gene Symbol: ATP5MC1 (ENSG00000159199)
    Fold Change: 1.47
    Ensembl ID: ENSG00000159199
  • Gene Symbol: CD81 (ENSG00000110651)
    Fold Change: 1.46
    Ensembl ID: ENSG00000110651
  • Gene Symbol: ATP1B3 (ENSG00000069849)
    Fold Change: 1.46
    Ensembl ID: ENSG00000069849
  • Gene Symbol: APLP2 (ENSG00000084234)
    Fold Change: 1.45
    Ensembl ID: ENSG00000084234
  • Gene Symbol: C1QBP (ENSG00000108561)
    Fold Change: 1.45
    Ensembl ID: ENSG00000108561
  • Gene Symbol: FOXN3 (ENSG00000053254)
    Fold Change: 1.44
    Ensembl ID: ENSG00000053254
  • Gene Symbol: ATP1A1 (ENSG00000163399)
    Fold Change: 1.44
    Ensembl ID: ENSG00000163399
  • Gene Symbol: BNIP3L (ENSG00000104765)
    Fold Change: 1.44
    Ensembl ID: ENSG00000104765
  • Gene Symbol: ASAH1 (ENSG00000104763)
    Fold Change: 1.43
    Ensembl ID: ENSG00000104763
  • Gene Symbol: CCT6A (ENSG00000146731)
    Fold Change: 1.43
    Ensembl ID: ENSG00000146731
  • Gene Symbol: ACADVL (ENSG00000072778)
    Fold Change: 1.41
    Ensembl ID: ENSG00000072778
  • Gene Symbol: ACP1 (ENSG00000143727)
    Fold Change: 1.33
    Ensembl ID: ENSG00000143727
  • Gene Symbol: AUP1 (ENSG00000115307)
    Fold Change: 1.32
    Ensembl ID: ENSG00000115307
  • Gene Symbol: APEX1 (ENSG00000100823)
    Fold Change: 1.31
    Ensembl ID: ENSG00000100823
  • Gene Symbol: AP3S1 (ENSG00000177879)
    Fold Change: 1.31
    Ensembl ID: ENSG00000177879
  • Gene Symbol: ATOX1 (ENSG00000177556)
    Fold Change: 1.29
    Ensembl ID: ENSG00000177556
  • Gene Symbol: CAMLG (ENSG00000164615)
    Fold Change: 1.29
    Ensembl ID: ENSG00000164615
  • Gene Symbol: CHD2 (ENSG00000173575)
    Fold Change: 1.29
    Ensembl ID: ENSG00000173575
  • Gene Symbol: ANXA7 (ENSG00000138279)
    Fold Change: 1.28
    Ensembl ID: ENSG00000138279
  • Gene Symbol: TBCB (ENSG00000105254)
    Fold Change: 1.28
    Ensembl ID: ENSG00000105254
  • Gene Symbol: ADAR (ENSG00000160710)
    Fold Change: 1.28
    Ensembl ID: ENSG00000160710
  • Gene Symbol: ARF5 (ENSG00000004059)
    Fold Change: 1.26
    Ensembl ID: ENSG00000004059
  • Gene Symbol: CHD1 (ENSG00000153922)
    Fold Change: 1.26
    Ensembl ID: ENSG00000153922
  • Gene Symbol: CLNS1A (ENSG00000074201)
    Fold Change: 1.26
    Ensembl ID: ENSG00000074201
  • Gene Symbol: BAX (ENSG00000087088)
    Fold Change: 1.25
    Ensembl ID: ENSG00000087088
  • Gene Symbol: CCNH (ENSG00000134480)
    Fold Change: 1.25
    Ensembl ID: ENSG00000134480
  • Gene Symbol: PTTG1IP (ENSG00000183255)
    Fold Change: 1.22
    Ensembl ID: ENSG00000183255
  • Gene Symbol: CAPNS1 (ENSG00000126247)
    Fold Change: 1.22
    Ensembl ID: ENSG00000126247
  • Gene Symbol: CD59 (ENSG00000085063)
    Fold Change: 1.22
    Ensembl ID: ENSG00000085063
  • Gene Symbol: RHOB (ENSG00000143878)
    Fold Change: 1.21
    Ensembl ID: ENSG00000143878
  • Gene Symbol: BAG1 (ENSG00000107262)
    Fold Change: 1.21
    Ensembl ID: ENSG00000107262
  • Gene Symbol: APP (ENSG00000142192)
    Fold Change: 1.21
    Ensembl ID: ENSG00000142192
  • Gene Symbol: CLTC (ENSG00000141367)
    Fold Change: 1.2
    Ensembl ID: ENSG00000141367
  • Gene Symbol: COPA (ENSG00000122218)
    Fold Change: 1.19
    Ensembl ID: ENSG00000122218
  • Gene Symbol: COMT (ENSG00000093010)
    Fold Change: 1.18
    Ensembl ID: ENSG00000093010
  • Gene Symbol: CHD4 (ENSG00000111642)
    Fold Change: 1.15
    Ensembl ID: ENSG00000111642
  • Gene Symbol: PARP1 (ENSG00000143799)
    Fold Change: 1.14
    Ensembl ID: ENSG00000143799
  • Gene Symbol: ATP2B1 (ENSG00000070961)
    Fold Change: 1.13
    Ensembl ID: ENSG00000070961
  • Gene Symbol: ADD3 (ENSG00000148700)
    Fold Change: 1.12
    Ensembl ID: ENSG00000148700
  • Gene Symbol: ADH5 (ENSG00000197894)
    Fold Change: 1.12
    Ensembl ID: ENSG00000197894
  • Gene Symbol: ATP6V1E1 (ENSG00000131100)
    Fold Change: 1.12
    Ensembl ID: ENSG00000131100
  • Gene Symbol: COPB1 (ENSG00000129083)
    Fold Change: 1.11
    Ensembl ID: ENSG00000129083
  • Gene Symbol: VPS51 (ENSG00000149823)
    Fold Change: 1.06
    Ensembl ID: ENSG00000149823
  • Gene Symbol: BNIP2 (ENSG00000140299)
    Fold Change: 1.05
    Ensembl ID: ENSG00000140299
  • Gene Symbol: CAPN2 (ENSG00000162909)
    Fold Change: 1.05
    Ensembl ID: ENSG00000162909
  • Gene Symbol: CLTB (ENSG00000175416)
    Fold Change: 1.03
    Ensembl ID: ENSG00000175416
  • Gene Symbol: BIRC2 (ENSG00000110330)
    Fold Change: 1.01
    Ensembl ID: ENSG00000110330
  • Gene Symbol: CDKN1B (ENSG00000111276)
    Fold Change: N/A
    Ensembl ID: ENSG00000111276
Hovered Details

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Hovered Details

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**Key Characteristics** * **Light detection**: S cone cells detect short-wavelength light, which is essential for color vision. * **Wavelength range**: The peak wavelength of light detected by S cone cells is between 420-440 nanometers, corresponding to blue-violet light. * **Genetic identity**: S cone cells are associated with the ACTB gene, which is involved in other cellular processes such as cell motility and cytoskeleton organization. * **Cellular localization**: S cone cells are found in the retina of the eye, specifically in the cone photoreceptor layer. * **Cellular structure**: S cone cells have a similar structure to other cone cells, with a photoreceptor membrane, a synaptic terminal, and a supporting cell. **Clinical Significance** * **Color vision deficiency**: Mutations in the ACTB gene have been associated with color vision deficiency, including red-green color blindness. * **Visual phenotypes**: S cone cells are essential for normal color vision, and their dysfunction can lead to visual phenotypes such as color blindness. * **Retinal diseases**: S cone cells are susceptible to retinal diseases such as age-related macular degeneration (AMD) and retinitis pigmentosa (RP), which can affect color vision. * **Gene therapy**: The study of S cone cells and their genetic identity has implications for gene therapy approaches aimed at treating color vision deficiency and other retinal diseases. **Pathways and Ontology** * **Actin cytoskeleton**: S cone cells are involved in the regulation of actin dynamics, which is essential for cell motility and cytoskeleton organization. * **Adherens junctions**: S cone cells interact with adherens junctions, which are essential for cell-cell adhesion and signaling. * **Apical junction complex**: S cone cells are involved in the formation of the apical junction complex, which is essential for cell-cell adhesion and signaling. * **Brahma complex**: S cone cells are involved in the regulation of chromatin organization by the Brahma complex. * **Chromatin remodeling**: S cone cells are involved in the regulation of chromatin remodeling, which is essential for gene expression. **Gene Symbol and Ensembl ID** * **ACTB**: The gene symbol for S cone cells is ACTB, which is also involved in other cellular processes such as cell motility and cytoskeleton organization. * **ENSG00000075624**: The Ensembl ID for S cone cells is ENSG00000075624, which is associated with the ACTB gene. **Gene Symbol and Ensembl ID** * **ACTG1**: The gene symbol for S cone cells is ACTG1, which is also involved in other cellular processes such as cell motility and cytoskeleton organization. * **ENSG00000184009**: The Ensembl ID for S cone cells is ENSG00000184009, which is associated with the ACTG1 gene.