Details for: CL0009043

Cell ID: CL0009043

Cell Name: intestinal crypt stem cell of colon

Marker Score Threshold: 2541
(Derived using integrated single-cell and genomic data)

Description: An intestinal crypt stem cell that is located in the colon.

Genes (max top 100)

(Marker Score score is uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Gene Symbol: HBE1 (ENSG00000213931)
    Fold Change: 1.17
    Ensembl ID: ENSG00000213931
  • Gene Symbol: FFAR3 (ENSG00000185897)
    Fold Change: 1.17
    Ensembl ID: ENSG00000185897
  • Gene Symbol: GNG3 (ENSG00000162188)
    Fold Change: 1.16
    Ensembl ID: ENSG00000162188
  • Gene Symbol: TRGV3 (ENSG00000211699)
    Fold Change: 1.16
    Ensembl ID: ENSG00000211699
  • Gene Symbol: GZMK (ENSG00000113088)
    Fold Change: 1.15
    Ensembl ID: ENSG00000113088
  • Gene Symbol: ZNF80 (ENSG00000174255)
    Fold Change: 1.11
    Ensembl ID: ENSG00000174255
  • Gene Symbol: EPO (ENSG00000130427)
    Fold Change: 1.1
    Ensembl ID: ENSG00000130427
  • Gene Symbol: KRT34 (ENSG00000131737)
    Fold Change: 1.1
    Ensembl ID: ENSG00000131737
  • Gene Symbol: INSL3 (ENSG00000248099)
    Fold Change: 1.08
    Ensembl ID: ENSG00000248099
  • Gene Symbol: AMELX (ENSG00000125363)
    Fold Change: 1.08
    Ensembl ID: ENSG00000125363
  • Gene Symbol: CFHR1 (ENSG00000244414)
    Fold Change: 1.07
    Ensembl ID: ENSG00000244414
  • Gene Symbol: FCN2 (ENSG00000160339)
    Fold Change: 1.07
    Ensembl ID: ENSG00000160339
  • Gene Symbol: SCN1A (ENSG00000144285)
    Fold Change: 1.06
    Ensembl ID: ENSG00000144285
  • Gene Symbol: TGM4 (ENSG00000163810)
    Fold Change: 1.06
    Ensembl ID: ENSG00000163810
  • Gene Symbol: PTTG2 (ENSG00000250254)
    Fold Change: 1.06
    Ensembl ID: ENSG00000250254
  • Gene Symbol: HCN2 (ENSG00000099822)
    Fold Change: 1.06
    Ensembl ID: ENSG00000099822
  • Gene Symbol: TRH (ENSG00000170893)
    Fold Change: 1.06
    Ensembl ID: ENSG00000170893
  • Gene Symbol: DEFA3 (ENSG00000239839)
    Fold Change: 1.06
    Ensembl ID: ENSG00000239839
  • Gene Symbol: S100A7 (ENSG00000143556)
    Fold Change: 1.06
    Ensembl ID: ENSG00000143556
  • Gene Symbol: NPTX1 (ENSG00000171246)
    Fold Change: 1.06
    Ensembl ID: ENSG00000171246
  • Gene Symbol: POU4F3 (ENSG00000091010)
    Fold Change: 1.06
    Ensembl ID: ENSG00000091010
  • Gene Symbol: KIF5A (ENSG00000155980)
    Fold Change: 1.06
    Ensembl ID: ENSG00000155980
  • Gene Symbol: MYF6 (ENSG00000111046)
    Fold Change: 1.06
    Ensembl ID: ENSG00000111046
  • Gene Symbol: MATN1 (ENSG00000162510)
    Fold Change: 1.05
    Ensembl ID: ENSG00000162510
  • Gene Symbol: PRB3 (ENSG00000197870)
    Fold Change: 1.05
    Ensembl ID: ENSG00000197870
  • Gene Symbol: CYP21A2 (ENSG00000231852)
    Fold Change: 1.05
    Ensembl ID: ENSG00000231852
  • Gene Symbol: CLC (ENSG00000105205)
    Fold Change: 1.05
    Ensembl ID: ENSG00000105205
  • Gene Symbol: IL24 (ENSG00000162892)
    Fold Change: 1.05
    Ensembl ID: ENSG00000162892
  • Gene Symbol: HBZ (ENSG00000130656)
    Fold Change: 1.04
    Ensembl ID: ENSG00000130656
  • Gene Symbol: HBD (ENSG00000223609)
    Fold Change: 1.04
    Ensembl ID: ENSG00000223609
  • Gene Symbol: PAX1 (ENSG00000125813)
    Fold Change: 1.04
    Ensembl ID: ENSG00000125813
  • Gene Symbol: DMP1 (ENSG00000152592)
    Fold Change: 1.04
    Ensembl ID: ENSG00000152592
  • Gene Symbol: RASGRF1 (ENSG00000058335)
    Fold Change: 1.03
    Ensembl ID: ENSG00000058335
  • Gene Symbol: P2RX2 (ENSG00000187848)
    Fold Change: 1.03
    Ensembl ID: ENSG00000187848
  • Gene Symbol: HTN1 (ENSG00000126550)
    Fold Change: 1.03
    Ensembl ID: ENSG00000126550
  • Gene Symbol: ARG1 (ENSG00000118520)
    Fold Change: 1.03
    Ensembl ID: ENSG00000118520
  • Gene Symbol: EXTL1 (ENSG00000158008)
    Fold Change: 1.03
    Ensembl ID: ENSG00000158008
  • Gene Symbol: PPP2R2C (ENSG00000074211)
    Fold Change: 1.03
    Ensembl ID: ENSG00000074211
  • Gene Symbol: ATP2B2 (ENSG00000157087)
    Fold Change: 1.03
    Ensembl ID: ENSG00000157087
  • Gene Symbol: WNT6 (ENSG00000115596)
    Fold Change: 1.02
    Ensembl ID: ENSG00000115596
  • Gene Symbol: HRG (ENSG00000113905)
    Fold Change: 1.02
    Ensembl ID: ENSG00000113905
  • Gene Symbol: LCN1 (ENSG00000160349)
    Fold Change: 1.02
    Ensembl ID: ENSG00000160349
  • Gene Symbol: SNAP91 (ENSG00000065609)
    Fold Change: 1.02
    Ensembl ID: ENSG00000065609
  • Gene Symbol: POU3F1 (ENSG00000185668)
    Fold Change: 1.02
    Ensembl ID: ENSG00000185668
  • Gene Symbol: CACNA1B (ENSG00000148408)
    Fold Change: 1.02
    Ensembl ID: ENSG00000148408
  • Gene Symbol: CCL19 (ENSG00000172724)
    Fold Change: 1.02
    Ensembl ID: ENSG00000172724
  • Gene Symbol: ACTN2 (ENSG00000077522)
    Fold Change: 1.02
    Ensembl ID: ENSG00000077522
  • Gene Symbol: DLX2 (ENSG00000115844)
    Fold Change: 1.02
    Ensembl ID: ENSG00000115844
  • Gene Symbol: EGR4 (ENSG00000135625)
    Fold Change: 1.02
    Ensembl ID: ENSG00000135625
  • Gene Symbol: CELA1 (ENSG00000139610)
    Fold Change: 1.02
    Ensembl ID: ENSG00000139610
  • Gene Symbol: CCL7 (ENSG00000108688)
    Fold Change: 1.02
    Ensembl ID: ENSG00000108688
  • Gene Symbol: SLC8A3 (ENSG00000100678)
    Fold Change: 1.02
    Ensembl ID: ENSG00000100678
  • Gene Symbol: TKTL1 (ENSG00000007350)
    Fold Change: 1.02
    Ensembl ID: ENSG00000007350
  • Gene Symbol: ENDOU (ENSG00000111405)
    Fold Change: 1.02
    Ensembl ID: ENSG00000111405
  • Gene Symbol: CFHR3 (ENSG00000116785)
    Fold Change: 1.02
    Ensembl ID: ENSG00000116785
  • Gene Symbol: SEPTIN5 (ENSG00000184702)
    Fold Change: 1.02
    Ensembl ID: ENSG00000184702
  • Gene Symbol: ITIH1 (ENSG00000055957)
    Fold Change: 1.02
    Ensembl ID: ENSG00000055957
  • Gene Symbol: TUBB4A (ENSG00000104833)
    Fold Change: 1.02
    Ensembl ID: ENSG00000104833
  • Gene Symbol: GP5 (ENSG00000178732)
    Fold Change: 1.02
    Ensembl ID: ENSG00000178732
  • Gene Symbol: KCND2 (ENSG00000184408)
    Fold Change: 1.02
    Ensembl ID: ENSG00000184408
  • Gene Symbol: CCL1 (ENSG00000108702)
    Fold Change: 1.02
    Ensembl ID: ENSG00000108702
  • Gene Symbol: CLEC4M (ENSG00000104938)
    Fold Change: 1.02
    Ensembl ID: ENSG00000104938
  • Gene Symbol: MS4A3 (ENSG00000149516)
    Fold Change: 1.02
    Ensembl ID: ENSG00000149516
  • Gene Symbol: GRIA2 (ENSG00000120251)
    Fold Change: 1.02
    Ensembl ID: ENSG00000120251
  • Gene Symbol: CCR3 (ENSG00000183625)
    Fold Change: 1.02
    Ensembl ID: ENSG00000183625
  • Gene Symbol: GPR182 (ENSG00000166856)
    Fold Change: 1.02
    Ensembl ID: ENSG00000166856
  • Gene Symbol: GABRA1 (ENSG00000022355)
    Fold Change: 1.02
    Ensembl ID: ENSG00000022355
  • Gene Symbol: FGF23 (ENSG00000118972)
    Fold Change: 1.02
    Ensembl ID: ENSG00000118972
  • Gene Symbol: ITIH3 (ENSG00000162267)
    Fold Change: 1.01
    Ensembl ID: ENSG00000162267
  • Gene Symbol: ASTN1 (ENSG00000152092)
    Fold Change: 1.01
    Ensembl ID: ENSG00000152092
  • Gene Symbol: KCNQ2 (ENSG00000075043)
    Fold Change: 1.01
    Ensembl ID: ENSG00000075043
  • Gene Symbol: P2RY4 (ENSG00000186912)
    Fold Change: 1.01
    Ensembl ID: ENSG00000186912
  • Gene Symbol: RCVRN (ENSG00000109047)
    Fold Change: 1.01
    Ensembl ID: ENSG00000109047
  • Gene Symbol: SCN2B (ENSG00000149575)
    Fold Change: 1.01
    Ensembl ID: ENSG00000149575
  • Gene Symbol: SLC22A7 (ENSG00000137204)
    Fold Change: 1.01
    Ensembl ID: ENSG00000137204
  • Gene Symbol: HTR3A (ENSG00000166736)
    Fold Change: 1.01
    Ensembl ID: ENSG00000166736
  • Gene Symbol: PPFIA4 (ENSG00000143847)
    Fold Change: 1.01
    Ensembl ID: ENSG00000143847
  • Gene Symbol: ARPP21 (ENSG00000172995)
    Fold Change: 1.01
    Ensembl ID: ENSG00000172995
  • Gene Symbol: ITGAD (ENSG00000156886)
    Fold Change: 1.01
    Ensembl ID: ENSG00000156886
  • Gene Symbol: SLC5A5 (ENSG00000105641)
    Fold Change: 1.01
    Ensembl ID: ENSG00000105641
  • Gene Symbol: GCM1 (ENSG00000137270)
    Fold Change: 1.01
    Ensembl ID: ENSG00000137270
  • Gene Symbol: ATP4A (ENSG00000105675)
    Fold Change: 1.01
    Ensembl ID: ENSG00000105675
  • Gene Symbol: ANGPTL7 (ENSG00000171819)
    Fold Change: 1.01
    Ensembl ID: ENSG00000171819
  • Gene Symbol: KRT16 (ENSG00000186832)
    Fold Change: 1.01
    Ensembl ID: ENSG00000186832
  • Gene Symbol: SERPINB4 (ENSG00000206073)
    Fold Change: 1.01
    Ensembl ID: ENSG00000206073
  • Gene Symbol: SCN2A (ENSG00000136531)
    Fold Change: 1.01
    Ensembl ID: ENSG00000136531
  • Gene Symbol: SCN4A (ENSG00000007314)
    Fold Change: 1.01
    Ensembl ID: ENSG00000007314
  • Gene Symbol: S100A5 (ENSG00000196420)
    Fold Change: 1.01
    Ensembl ID: ENSG00000196420
  • Gene Symbol: CPB2 (ENSG00000080618)
    Fold Change: 1.01
    Ensembl ID: ENSG00000080618
  • Gene Symbol: GJA3 (ENSG00000121743)
    Fold Change: 1
    Ensembl ID: ENSG00000121743
  • Gene Symbol: IL4 (ENSG00000113520)
    Fold Change: 1
    Ensembl ID: ENSG00000113520
  • Gene Symbol: SPTA1 (ENSG00000163554)
    Fold Change: 1
    Ensembl ID: ENSG00000163554
  • Gene Symbol: NMNAT2 (ENSG00000157064)
    Fold Change: 1
    Ensembl ID: ENSG00000157064
  • Gene Symbol: F2RL3 (ENSG00000127533)
    Fold Change: 1
    Ensembl ID: ENSG00000127533
  • Gene Symbol: HDC (ENSG00000140287)
    Fold Change: 1
    Ensembl ID: ENSG00000140287
  • Gene Symbol: CGA (ENSG00000135346)
    Fold Change: 1
    Ensembl ID: ENSG00000135346
  • Gene Symbol: MAB21L2 (ENSG00000181541)
    Fold Change: 1
    Ensembl ID: ENSG00000181541
  • Gene Symbol: CCL8 (ENSG00000108700)
    Fold Change: 1
    Ensembl ID: ENSG00000108700
  • Gene Symbol: SSTR5 (ENSG00000162009)
    Fold Change: 1
    Ensembl ID: ENSG00000162009
  • Gene Symbol: FPR2 (ENSG00000171049)
    Fold Change: 1
    Ensembl ID: ENSG00000171049
Hovered Details

Hover over a box to see details here...

Hovered Details

Hover over a box to see details here...

**Key Characteristics** 1. **Location**: The cell is located in the colon, specifically in the intestinal crypts. 2. **Gene Symbols**: The cell's gene symbols include HBE1, FFAR3, GNG3, TRGV3, GZMK, ZNF80, EPO, KRT34, and INSL3. 3. **Ensembl IDs**: The cell's Ensembl IDs are ENSG00000213931, ENSG00000185897, ENSG00000162188, ENSG00000211699, ENSG00000113088, ENSG00000174255, ENSG00000130427, ENSG00000131737, and ENSG00000248099. 4. **Pathways/Ontology**: The cell is involved in various pathways and ontology, including blood microparticle transport, carbon dioxide transport, cellular oxidant detoxification, hemostasis, immune response, inflammation, and cell signaling. 5. **Function**: The cell is a stem cell that maintains and regenerates the intestinal epithelium. **Clinical Significance** 1. **Intestinal Epithelial Regeneration**: The cell plays a crucial role in the regeneration of the intestinal epithelium, which is essential for maintaining gut homeostasis and preventing diseases such as inflammatory bowel disease (IBD). 2. **Blood Microparticle Transport**: The cell is involved in the transport of blood microparticles, which are small vesicles that play a role in various physiological and pathological processes. 3. **Hemostasis**: The cell is involved in hemostasis, which is the process of stopping bleeding after an injury. 4. **Immune Response**: The cell is part of the immune response, which is the body's defense against pathogens and other foreign substances. 5. **Inflammatory Disease**: The cell's dysregulation has been implicated in various inflammatory diseases, including IBD, rheumatoid arthritis, and atherosclerosis. In conclusion, the intestinal crypt stem cell (CL0009043) is a critical cell type that plays a central role in maintaining and regenerating the intestinal epithelium, regulating blood microparticle transport, and modulating the immune response. Its dysregulation has been implicated in various diseases, highlighting the importance of understanding its biology and function.