Details for: CL4023011

Cell ID: CL4023011

Cell Name: lamp5 GABAergic cortical interneuron

Marker Score Threshold: 14952
(Derived using integrated single-cell and genomic data)

Description: A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Lamp5. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Lamp5.

Genes (max top 100)

(Marker Score score is uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Gene Symbol: ADARB2 (ENSG00000185736)
    Fold Change: 2.87
    Ensembl ID: ENSG00000185736
  • Gene Symbol: ANK3 (ENSG00000151150)
    Fold Change: 2.86
    Ensembl ID: ENSG00000151150
  • Gene Symbol: ANK2 (ENSG00000145362)
    Fold Change: 2.85
    Ensembl ID: ENSG00000145362
  • Gene Symbol: RERE (ENSG00000142599)
    Fold Change: 2.81
    Ensembl ID: ENSG00000142599
  • Gene Symbol: ALK (ENSG00000171094)
    Fold Change: 2.79
    Ensembl ID: ENSG00000171094
  • Gene Symbol: GRK3 (ENSG00000100077)
    Fold Change: 2.79
    Ensembl ID: ENSG00000100077
  • Gene Symbol: APP (ENSG00000142192)
    Fold Change: 2.72
    Ensembl ID: ENSG00000142192
  • Gene Symbol: ASTN1 (ENSG00000152092)
    Fold Change: 2.7
    Ensembl ID: ENSG00000152092
  • Gene Symbol: ADCY2 (ENSG00000078295)
    Fold Change: 2.62
    Ensembl ID: ENSG00000078295
  • Gene Symbol: ATRX (ENSG00000085224)
    Fold Change: 2.62
    Ensembl ID: ENSG00000085224
  • Gene Symbol: APBA1 (ENSG00000107282)
    Fold Change: 2.61
    Ensembl ID: ENSG00000107282
  • Gene Symbol: ADK (ENSG00000156110)
    Fold Change: 2.56
    Ensembl ID: ENSG00000156110
  • Gene Symbol: ACACA (ENSG00000278540)
    Fold Change: 2.5
    Ensembl ID: ENSG00000278540
  • Gene Symbol: APC (ENSG00000134982)
    Fold Change: 2.5
    Ensembl ID: ENSG00000134982
  • Gene Symbol: AMPH (ENSG00000078053)
    Fold Change: 2.48
    Ensembl ID: ENSG00000078053
  • Gene Symbol: ABR (ENSG00000159842)
    Fold Change: 2.45
    Ensembl ID: ENSG00000159842
  • Gene Symbol: ATP2B2 (ENSG00000157087)
    Fold Change: 2.44
    Ensembl ID: ENSG00000157087
  • Gene Symbol: ATP1B1 (ENSG00000143153)
    Fold Change: 2.42
    Ensembl ID: ENSG00000143153
  • Gene Symbol: APBB2 (ENSG00000163697)
    Fold Change: 2.41
    Ensembl ID: ENSG00000163697
  • Gene Symbol: ADRA1A (ENSG00000120907)
    Fold Change: 2.35
    Ensembl ID: ENSG00000120907
  • Gene Symbol: ADCY9 (ENSG00000162104)
    Fold Change: 2.31
    Ensembl ID: ENSG00000162104
  • Gene Symbol: ARHGAP5 (ENSG00000100852)
    Fold Change: 2.24
    Ensembl ID: ENSG00000100852
  • Gene Symbol: ATP6V0A1 (ENSG00000033627)
    Fold Change: 2.21
    Ensembl ID: ENSG00000033627
  • Gene Symbol: ADD3 (ENSG00000148700)
    Fold Change: 2.21
    Ensembl ID: ENSG00000148700
  • Gene Symbol: ASPH (ENSG00000198363)
    Fold Change: 2.19
    Ensembl ID: ENSG00000198363
  • Gene Symbol: ACYP2 (ENSG00000170634)
    Fold Change: 2.17
    Ensembl ID: ENSG00000170634
  • Gene Symbol: APBA2 (ENSG00000034053)
    Fold Change: 2.14
    Ensembl ID: ENSG00000034053
  • Gene Symbol: ADD2 (ENSG00000075340)
    Fold Change: 2.13
    Ensembl ID: ENSG00000075340
  • Gene Symbol: ABAT (ENSG00000183044)
    Fold Change: 2.12
    Ensembl ID: ENSG00000183044
  • Gene Symbol: AP2B1 (ENSG00000006125)
    Fold Change: 2.03
    Ensembl ID: ENSG00000006125
  • Gene Symbol: AP2A2 (ENSG00000183020)
    Fold Change: 2.02
    Ensembl ID: ENSG00000183020
  • Gene Symbol: ADAM10 (ENSG00000137845)
    Fold Change: 2
    Ensembl ID: ENSG00000137845
  • Gene Symbol: ATP2B1 (ENSG00000070961)
    Fold Change: 1.99
    Ensembl ID: ENSG00000070961
  • Gene Symbol: ANK1 (ENSG00000029534)
    Fold Change: 1.98
    Ensembl ID: ENSG00000029534
  • Gene Symbol: APLP2 (ENSG00000084234)
    Fold Change: 1.97
    Ensembl ID: ENSG00000084234
  • Gene Symbol: ADD1 (ENSG00000087274)
    Fold Change: 1.96
    Ensembl ID: ENSG00000087274
  • Gene Symbol: ADCY5 (ENSG00000173175)
    Fold Change: 1.96
    Ensembl ID: ENSG00000173175
  • Gene Symbol: ATP2A2 (ENSG00000174437)
    Fold Change: 1.94
    Ensembl ID: ENSG00000174437
  • Gene Symbol: ABL1 (ENSG00000097007)
    Fold Change: 1.93
    Ensembl ID: ENSG00000097007
  • Gene Symbol: ADCYAP1R1 (ENSG00000078549)
    Fold Change: 1.87
    Ensembl ID: ENSG00000078549
  • Gene Symbol: ABL2 (ENSG00000143322)
    Fold Change: 1.85
    Ensembl ID: ENSG00000143322
  • Gene Symbol: ARRB1 (ENSG00000137486)
    Fold Change: 1.84
    Ensembl ID: ENSG00000137486
  • Gene Symbol: ATM (ENSG00000149311)
    Fold Change: 1.82
    Ensembl ID: ENSG00000149311
  • Gene Symbol: ATP1A3 (ENSG00000105409)
    Fold Change: 1.76
    Ensembl ID: ENSG00000105409
  • Gene Symbol: ADCY1 (ENSG00000164742)
    Fold Change: 1.75
    Ensembl ID: ENSG00000164742
  • Gene Symbol: ATP1A1 (ENSG00000163399)
    Fold Change: 1.73
    Ensembl ID: ENSG00000163399
  • Gene Symbol: ATP6V1A (ENSG00000114573)
    Fold Change: 1.73
    Ensembl ID: ENSG00000114573
  • Gene Symbol: ABCA3 (ENSG00000167972)
    Fold Change: 1.72
    Ensembl ID: ENSG00000167972
  • Gene Symbol: ACVR2A (ENSG00000121989)
    Fold Change: 1.67
    Ensembl ID: ENSG00000121989
  • Gene Symbol: ACTN1 (ENSG00000072110)
    Fold Change: 1.66
    Ensembl ID: ENSG00000072110
  • Gene Symbol: BIN1 (ENSG00000136717)
    Fold Change: 1.63
    Ensembl ID: ENSG00000136717
  • Gene Symbol: ATR (ENSG00000175054)
    Fold Change: 1.57
    Ensembl ID: ENSG00000175054
  • Gene Symbol: ADAR (ENSG00000160710)
    Fold Change: 1.55
    Ensembl ID: ENSG00000160710
  • Gene Symbol: BMAL1 (ENSG00000133794)
    Fold Change: 1.54
    Ensembl ID: ENSG00000133794
  • Gene Symbol: TLE5 (ENSG00000104964)
    Fold Change: 1.54
    Ensembl ID: ENSG00000104964
  • Gene Symbol: AP1G1 (ENSG00000166747)
    Fold Change: 1.52
    Ensembl ID: ENSG00000166747
  • Gene Symbol: ATP6V0C (ENSG00000185883)
    Fold Change: 1.51
    Ensembl ID: ENSG00000185883
  • Gene Symbol: ARNT (ENSG00000143437)
    Fold Change: 1.5
    Ensembl ID: ENSG00000143437
  • Gene Symbol: XIAP (ENSG00000101966)
    Fold Change: 1.5
    Ensembl ID: ENSG00000101966
  • Gene Symbol: ARSB (ENSG00000113273)
    Fold Change: 1.5
    Ensembl ID: ENSG00000113273
  • Gene Symbol: ACADSB (ENSG00000196177)
    Fold Change: 1.45
    Ensembl ID: ENSG00000196177
  • Gene Symbol: ANXA7 (ENSG00000138279)
    Fold Change: 1.43
    Ensembl ID: ENSG00000138279
  • Gene Symbol: ADCY8 (ENSG00000155897)
    Fold Change: 1.42
    Ensembl ID: ENSG00000155897
  • Gene Symbol: ASIC2 (ENSG00000108684)
    Fold Change: 1.39
    Ensembl ID: ENSG00000108684
  • Gene Symbol: ACTB (ENSG00000075624)
    Fold Change: 1.39
    Ensembl ID: ENSG00000075624
  • Gene Symbol: ACTN4 (ENSG00000130402)
    Fold Change: 1.37
    Ensembl ID: ENSG00000130402
  • Gene Symbol: ADCY3 (ENSG00000138031)
    Fold Change: 1.37
    Ensembl ID: ENSG00000138031
  • Gene Symbol: AARS1 (ENSG00000090861)
    Fold Change: 1.37
    Ensembl ID: ENSG00000090861
  • Gene Symbol: AKT2 (ENSG00000105221)
    Fold Change: 1.37
    Ensembl ID: ENSG00000105221
  • Gene Symbol: ADARB1 (ENSG00000197381)
    Fold Change: 1.34
    Ensembl ID: ENSG00000197381
  • Gene Symbol: APBB1 (ENSG00000166313)
    Fold Change: 1.33
    Ensembl ID: ENSG00000166313
  • Gene Symbol: ATP1B2 (ENSG00000129244)
    Fold Change: 1.33
    Ensembl ID: ENSG00000129244
  • Gene Symbol: ARL3 (ENSG00000138175)
    Fold Change: 1.33
    Ensembl ID: ENSG00000138175
  • Gene Symbol: ATP6V1B2 (ENSG00000147416)
    Fold Change: 1.32
    Ensembl ID: ENSG00000147416
  • Gene Symbol: ACO2 (ENSG00000100412)
    Fold Change: 1.31
    Ensembl ID: ENSG00000100412
  • Gene Symbol: ATP6V1C1 (ENSG00000155097)
    Fold Change: 1.3
    Ensembl ID: ENSG00000155097
  • Gene Symbol: ATP1B3 (ENSG00000069849)
    Fold Change: 1.26
    Ensembl ID: ENSG00000069849
  • Gene Symbol: TRIM23 (ENSG00000113595)
    Fold Change: 1.26
    Ensembl ID: ENSG00000113595
  • Gene Symbol: ATF1 (ENSG00000123268)
    Fold Change: 1.23
    Ensembl ID: ENSG00000123268
  • Gene Symbol: ACAT1 (ENSG00000075239)
    Fold Change: 1.22
    Ensembl ID: ENSG00000075239
  • Gene Symbol: AGL (ENSG00000162688)
    Fold Change: 1.21
    Ensembl ID: ENSG00000162688
  • Gene Symbol: ACVR1 (ENSG00000115170)
    Fold Change: 1.2
    Ensembl ID: ENSG00000115170
  • Gene Symbol: ANXA6 (ENSG00000197043)
    Fold Change: 1.16
    Ensembl ID: ENSG00000197043
  • Gene Symbol: AMD1 (ENSG00000123505)
    Fold Change: 1.16
    Ensembl ID: ENSG00000123505
  • Gene Symbol: ADSS2 (ENSG00000035687)
    Fold Change: 1.14
    Ensembl ID: ENSG00000035687
  • Gene Symbol: ACADM (ENSG00000117054)
    Fold Change: 1.13
    Ensembl ID: ENSG00000117054
  • Gene Symbol: ATP5F1A (ENSG00000152234)
    Fold Change: 1.12
    Ensembl ID: ENSG00000152234
  • Gene Symbol: RHOA (ENSG00000067560)
    Fold Change: 1.12
    Ensembl ID: ENSG00000067560
  • Gene Symbol: ATP5MC2 (ENSG00000135390)
    Fold Change: 1.12
    Ensembl ID: ENSG00000135390
  • Gene Symbol: AHR (ENSG00000106546)
    Fold Change: 1.11
    Ensembl ID: ENSG00000106546
  • Gene Symbol: ACVR1B (ENSG00000135503)
    Fold Change: 1.1
    Ensembl ID: ENSG00000135503
  • Gene Symbol: ACO1 (ENSG00000122729)
    Fold Change: 1.09
    Ensembl ID: ENSG00000122729
  • Gene Symbol: ASAH1 (ENSG00000104763)
    Fold Change: 1.09
    Ensembl ID: ENSG00000104763
  • Gene Symbol: ABCB7 (ENSG00000131269)
    Fold Change: 1.06
    Ensembl ID: ENSG00000131269
  • Gene Symbol: ARF1 (ENSG00000143761)
    Fold Change: 1.05
    Ensembl ID: ENSG00000143761
  • Gene Symbol: ATP6V1E1 (ENSG00000131100)
    Fold Change: 1.05
    Ensembl ID: ENSG00000131100
  • Gene Symbol: ALDH2 (ENSG00000111275)
    Fold Change: 1.05
    Ensembl ID: ENSG00000111275
  • Gene Symbol: ARG2 (ENSG00000081181)
    Fold Change: 1.03
    Ensembl ID: ENSG00000081181
  • Gene Symbol: ATP7B (ENSG00000123191)
    Fold Change: 1.03
    Ensembl ID: ENSG00000123191
  • Gene Symbol: ATP2B3 (ENSG00000067842)
    Fold Change: 1.03
    Ensembl ID: ENSG00000067842
Hovered Details

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Hovered Details

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**Key Characteristics** 1. **Cell Type**: The lamp5 cell type is a GABAergic interneuron located in the cerebral cortex. 2. **Protein Expression**: The Lamp5 protein is expressed by this cell type, which is a characteristic feature of this cell type. 3. **Genes**: The genes ADARB2, ANK3, and RERE are expressed by this cell type, which are involved in various cellular processes such as adenosine deaminase activity, axon guidance, and transcriptional regulation. 4. **Pathways/Ontology**: The pathways and ontology associated with this cell type include adenosine deaminase activity, axon guidance, and transcriptional regulation. 5. **Cellular Processes**: The cellular processes associated with this cell type include adenosine deaminase activity, axon guidance, and transcriptional regulation. **Clinical Significance** 1. **Neurological Disorders**: The lamp5 cell type is involved in regulating neural activity and information processing within the brain, which is crucial for normal brain function. Dysregulation of this cell type has been implicated in various neurological disorders, including epilepsy, schizophrenia, and autism spectrum disorder. 2. **Neurodevelopmental Disorders**: The lamp5 cell type is also involved in neurodevelopmental disorders, such as intellectual disability and autism spectrum disorder. 3. **Cancer**: The lamp5 cell type has been implicated in cancer, including glioblastoma and other types of brain cancer. 4. **Neurological Function**: The lamp5 cell type plays a crucial role in regulating neural activity and information processing within the brain, which is essential for normal brain function. In conclusion, the lamp5 cell type is a transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses the Lamp5 protein. This cell type is involved in various cellular processes, including adenosine deaminase activity, axon guidance, and transcriptional regulation. The clinical significance of this cell type is significant, as dysregulation of this cell type has been implicated in various neurological disorders, including epilepsy, schizophrenia, and autism spectrum disorder.