Details for: CL4023015

Cell ID: CL4023015

Cell Name: sncg GABAergic cortical interneuron

Marker Score Threshold: 7666
(Derived using integrated single-cell and genomic data)

Description: A transcriptomically distinct GABAergic neuron located in the cerebral cortex that expresses Gamma-synuclein. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: CGE-derived interneurons', Author Categories: 'CrossArea_subclass', clusters Sncg.

Genes (max top 100)

(Marker Score score is uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Gene Symbol: ADARB2 (ENSG00000185736)
    Fold Change: 2.89
    Ensembl ID: ENSG00000185736
  • Gene Symbol: ANK2 (ENSG00000145362)
    Fold Change: 2.88
    Ensembl ID: ENSG00000145362
  • Gene Symbol: ANK3 (ENSG00000151150)
    Fold Change: 2.87
    Ensembl ID: ENSG00000151150
  • Gene Symbol: ASIC2 (ENSG00000108684)
    Fold Change: 2.84
    Ensembl ID: ENSG00000108684
  • Gene Symbol: ADCY2 (ENSG00000078295)
    Fold Change: 2.82
    Ensembl ID: ENSG00000078295
  • Gene Symbol: RERE (ENSG00000142599)
    Fold Change: 2.8
    Ensembl ID: ENSG00000142599
  • Gene Symbol: APP (ENSG00000142192)
    Fold Change: 2.74
    Ensembl ID: ENSG00000142192
  • Gene Symbol: ADRA1A (ENSG00000120907)
    Fold Change: 2.64
    Ensembl ID: ENSG00000120907
  • Gene Symbol: ATRX (ENSG00000085224)
    Fold Change: 2.62
    Ensembl ID: ENSG00000085224
  • Gene Symbol: ACACA (ENSG00000278540)
    Fold Change: 2.57
    Ensembl ID: ENSG00000278540
  • Gene Symbol: ASTN1 (ENSG00000152092)
    Fold Change: 2.56
    Ensembl ID: ENSG00000152092
  • Gene Symbol: ATP2B2 (ENSG00000157087)
    Fold Change: 2.51
    Ensembl ID: ENSG00000157087
  • Gene Symbol: ATP1B1 (ENSG00000143153)
    Fold Change: 2.5
    Ensembl ID: ENSG00000143153
  • Gene Symbol: APBA1 (ENSG00000107282)
    Fold Change: 2.48
    Ensembl ID: ENSG00000107282
  • Gene Symbol: APC (ENSG00000134982)
    Fold Change: 2.48
    Ensembl ID: ENSG00000134982
  • Gene Symbol: ABR (ENSG00000159842)
    Fold Change: 2.46
    Ensembl ID: ENSG00000159842
  • Gene Symbol: ATP2B1 (ENSG00000070961)
    Fold Change: 2.45
    Ensembl ID: ENSG00000070961
  • Gene Symbol: APBA2 (ENSG00000034053)
    Fold Change: 2.44
    Ensembl ID: ENSG00000034053
  • Gene Symbol: ADK (ENSG00000156110)
    Fold Change: 2.4
    Ensembl ID: ENSG00000156110
  • Gene Symbol: AMPH (ENSG00000078053)
    Fold Change: 2.33
    Ensembl ID: ENSG00000078053
  • Gene Symbol: ARHGAP5 (ENSG00000100852)
    Fold Change: 2.33
    Ensembl ID: ENSG00000100852
  • Gene Symbol: ATP6V0A1 (ENSG00000033627)
    Fold Change: 2.23
    Ensembl ID: ENSG00000033627
  • Gene Symbol: APBB2 (ENSG00000163697)
    Fold Change: 2.23
    Ensembl ID: ENSG00000163697
  • Gene Symbol: GRK3 (ENSG00000100077)
    Fold Change: 2.22
    Ensembl ID: ENSG00000100077
  • Gene Symbol: ACYP2 (ENSG00000170634)
    Fold Change: 2.17
    Ensembl ID: ENSG00000170634
  • Gene Symbol: ADRA1B (ENSG00000170214)
    Fold Change: 2.16
    Ensembl ID: ENSG00000170214
  • Gene Symbol: AUH (ENSG00000148090)
    Fold Change: 2.14
    Ensembl ID: ENSG00000148090
  • Gene Symbol: ADD2 (ENSG00000075340)
    Fold Change: 2.1
    Ensembl ID: ENSG00000075340
  • Gene Symbol: KIF1A (ENSG00000130294)
    Fold Change: 2.06
    Ensembl ID: ENSG00000130294
  • Gene Symbol: AP2B1 (ENSG00000006125)
    Fold Change: 2.04
    Ensembl ID: ENSG00000006125
  • Gene Symbol: ABL2 (ENSG00000143322)
    Fold Change: 2.04
    Ensembl ID: ENSG00000143322
  • Gene Symbol: ADAM10 (ENSG00000137845)
    Fold Change: 2.03
    Ensembl ID: ENSG00000137845
  • Gene Symbol: ASPH (ENSG00000198363)
    Fold Change: 1.96
    Ensembl ID: ENSG00000198363
  • Gene Symbol: ATP1A3 (ENSG00000105409)
    Fold Change: 1.95
    Ensembl ID: ENSG00000105409
  • Gene Symbol: ADD1 (ENSG00000087274)
    Fold Change: 1.94
    Ensembl ID: ENSG00000087274
  • Gene Symbol: ADCYAP1R1 (ENSG00000078549)
    Fold Change: 1.9
    Ensembl ID: ENSG00000078549
  • Gene Symbol: ATP1A1 (ENSG00000163399)
    Fold Change: 1.88
    Ensembl ID: ENSG00000163399
  • Gene Symbol: ABL1 (ENSG00000097007)
    Fold Change: 1.87
    Ensembl ID: ENSG00000097007
  • Gene Symbol: ABAT (ENSG00000183044)
    Fold Change: 1.85
    Ensembl ID: ENSG00000183044
  • Gene Symbol: ATP2A2 (ENSG00000174437)
    Fold Change: 1.85
    Ensembl ID: ENSG00000174437
  • Gene Symbol: BACH1 (ENSG00000156273)
    Fold Change: 1.85
    Ensembl ID: ENSG00000156273
  • Gene Symbol: ADCY5 (ENSG00000173175)
    Fold Change: 1.83
    Ensembl ID: ENSG00000173175
  • Gene Symbol: ACTN1 (ENSG00000072110)
    Fold Change: 1.79
    Ensembl ID: ENSG00000072110
  • Gene Symbol: ACVR2A (ENSG00000121989)
    Fold Change: 1.77
    Ensembl ID: ENSG00000121989
  • Gene Symbol: ARRB1 (ENSG00000137486)
    Fold Change: 1.77
    Ensembl ID: ENSG00000137486
  • Gene Symbol: ADCY9 (ENSG00000162104)
    Fold Change: 1.75
    Ensembl ID: ENSG00000162104
  • Gene Symbol: ADCY3 (ENSG00000138031)
    Fold Change: 1.72
    Ensembl ID: ENSG00000138031
  • Gene Symbol: AP2A2 (ENSG00000183020)
    Fold Change: 1.71
    Ensembl ID: ENSG00000183020
  • Gene Symbol: ADD3 (ENSG00000148700)
    Fold Change: 1.71
    Ensembl ID: ENSG00000148700
  • Gene Symbol: ABCA3 (ENSG00000167972)
    Fold Change: 1.68
    Ensembl ID: ENSG00000167972
  • Gene Symbol: ATP6V1A (ENSG00000114573)
    Fold Change: 1.68
    Ensembl ID: ENSG00000114573
  • Gene Symbol: ATM (ENSG00000149311)
    Fold Change: 1.66
    Ensembl ID: ENSG00000149311
  • Gene Symbol: ACADSB (ENSG00000196177)
    Fold Change: 1.59
    Ensembl ID: ENSG00000196177
  • Gene Symbol: ATR (ENSG00000175054)
    Fold Change: 1.58
    Ensembl ID: ENSG00000175054
  • Gene Symbol: ANK1 (ENSG00000029534)
    Fold Change: 1.58
    Ensembl ID: ENSG00000029534
  • Gene Symbol: BIN1 (ENSG00000136717)
    Fold Change: 1.53
    Ensembl ID: ENSG00000136717
  • Gene Symbol: ADAR (ENSG00000160710)
    Fold Change: 1.51
    Ensembl ID: ENSG00000160710
  • Gene Symbol: ATP6V0C (ENSG00000185883)
    Fold Change: 1.47
    Ensembl ID: ENSG00000185883
  • Gene Symbol: ADARB1 (ENSG00000197381)
    Fold Change: 1.46
    Ensembl ID: ENSG00000197381
  • Gene Symbol: AP1G1 (ENSG00000166747)
    Fold Change: 1.46
    Ensembl ID: ENSG00000166747
  • Gene Symbol: APLP2 (ENSG00000084234)
    Fold Change: 1.46
    Ensembl ID: ENSG00000084234
  • Gene Symbol: ARNT (ENSG00000143437)
    Fold Change: 1.43
    Ensembl ID: ENSG00000143437
  • Gene Symbol: ADCY1 (ENSG00000164742)
    Fold Change: 1.42
    Ensembl ID: ENSG00000164742
  • Gene Symbol: XIAP (ENSG00000101966)
    Fold Change: 1.42
    Ensembl ID: ENSG00000101966
  • Gene Symbol: ACTB (ENSG00000075624)
    Fold Change: 1.39
    Ensembl ID: ENSG00000075624
  • Gene Symbol: ATP6V1C1 (ENSG00000155097)
    Fold Change: 1.37
    Ensembl ID: ENSG00000155097
  • Gene Symbol: ARSB (ENSG00000113273)
    Fold Change: 1.36
    Ensembl ID: ENSG00000113273
  • Gene Symbol: APBB1 (ENSG00000166313)
    Fold Change: 1.34
    Ensembl ID: ENSG00000166313
  • Gene Symbol: ANXA7 (ENSG00000138279)
    Fold Change: 1.32
    Ensembl ID: ENSG00000138279
  • Gene Symbol: STS (ENSG00000101846)
    Fold Change: 1.32
    Ensembl ID: ENSG00000101846
  • Gene Symbol: ATP2B4 (ENSG00000058668)
    Fold Change: 1.32
    Ensembl ID: ENSG00000058668
  • Gene Symbol: ACTN4 (ENSG00000130402)
    Fold Change: 1.31
    Ensembl ID: ENSG00000130402
  • Gene Symbol: ACVR1B (ENSG00000135503)
    Fold Change: 1.31
    Ensembl ID: ENSG00000135503
  • Gene Symbol: AMD1 (ENSG00000123505)
    Fold Change: 1.27
    Ensembl ID: ENSG00000123505
  • Gene Symbol: AKT2 (ENSG00000105221)
    Fold Change: 1.27
    Ensembl ID: ENSG00000105221
  • Gene Symbol: AGL (ENSG00000162688)
    Fold Change: 1.25
    Ensembl ID: ENSG00000162688
  • Gene Symbol: ATP1B3 (ENSG00000069849)
    Fold Change: 1.25
    Ensembl ID: ENSG00000069849
  • Gene Symbol: TRIM23 (ENSG00000113595)
    Fold Change: 1.24
    Ensembl ID: ENSG00000113595
  • Gene Symbol: ARL3 (ENSG00000138175)
    Fold Change: 1.23
    Ensembl ID: ENSG00000138175
  • Gene Symbol: ALDH2 (ENSG00000111275)
    Fold Change: 1.22
    Ensembl ID: ENSG00000111275
  • Gene Symbol: ATP6V1B2 (ENSG00000147416)
    Fold Change: 1.22
    Ensembl ID: ENSG00000147416
  • Gene Symbol: AARS1 (ENSG00000090861)
    Fold Change: 1.2
    Ensembl ID: ENSG00000090861
  • Gene Symbol: ACO2 (ENSG00000100412)
    Fold Change: 1.18
    Ensembl ID: ENSG00000100412
  • Gene Symbol: TLE5 (ENSG00000104964)
    Fold Change: 1.18
    Ensembl ID: ENSG00000104964
  • Gene Symbol: ACAT1 (ENSG00000075239)
    Fold Change: 1.18
    Ensembl ID: ENSG00000075239
  • Gene Symbol: ATF1 (ENSG00000123268)
    Fold Change: 1.18
    Ensembl ID: ENSG00000123268
  • Gene Symbol: ATP1B2 (ENSG00000129244)
    Fold Change: 1.15
    Ensembl ID: ENSG00000129244
  • Gene Symbol: ZFHX3 (ENSG00000140836)
    Fold Change: 1.12
    Ensembl ID: ENSG00000140836
  • Gene Symbol: RHOA (ENSG00000067560)
    Fold Change: 1.11
    Ensembl ID: ENSG00000067560
  • Gene Symbol: APLP1 (ENSG00000105290)
    Fold Change: 1.1
    Ensembl ID: ENSG00000105290
  • Gene Symbol: ADCY8 (ENSG00000155897)
    Fold Change: 1.1
    Ensembl ID: ENSG00000155897
  • Gene Symbol: ACADM (ENSG00000117054)
    Fold Change: 1.08
    Ensembl ID: ENSG00000117054
  • Gene Symbol: ADSS2 (ENSG00000035687)
    Fold Change: 1.05
    Ensembl ID: ENSG00000035687
  • Gene Symbol: ANXA6 (ENSG00000197043)
    Fold Change: 1.04
    Ensembl ID: ENSG00000197043
  • Gene Symbol: BMAL1 (ENSG00000133794)
    Fold Change: 1.03
    Ensembl ID: ENSG00000133794
  • Gene Symbol: ASIC1 (ENSG00000110881)
    Fold Change: 1.02
    Ensembl ID: ENSG00000110881
  • Gene Symbol: ALDH3A2 (ENSG00000072210)
    Fold Change: 1.01
    Ensembl ID: ENSG00000072210
  • Gene Symbol: ABCA1 (ENSG00000165029)
    Fold Change: 1.01
    Ensembl ID: ENSG00000165029
  • Gene Symbol: ATP5F1A (ENSG00000152234)
    Fold Change: 1.01
    Ensembl ID: ENSG00000152234
  • Gene Symbol: ACO1 (ENSG00000122729)
    Fold Change: 1.01
    Ensembl ID: ENSG00000122729
Hovered Details

Hover over a box to see details here...

Hovered Details

Hover over a box to see details here...

**Key Characteristics** The sncg GABAergic cortical interneuron is characterized by its expression of specific genes, including: 1. **ADARB2** (Adenosine Deaminase Activity-Related Gene 2): This gene is involved in the regulation of adenosine metabolism and has been implicated in various physiological and pathological processes, including cardiac muscle contraction and synaptic transmission. 2. **ANK2** (Ankyrin Repeat Domain Containing 2): This gene is involved in the regulation of cardiac muscle contraction and has been implicated in various physiological and pathological processes, including cardiac muscle contraction and synaptic transmission. 3. **ANK3** (Ankyrin Repeat Domain Containing 3): This gene is involved in the regulation of synaptic transmission and has been implicated in various physiological and pathological processes, including synaptic transmission and neuronal development. 4. **ASIC2** (Acid-Sensing Ion Channel 2): This gene is involved in the regulation of synaptic transmission and has been implicated in various physiological and pathological processes, including synaptic transmission and sensory perception. The sncg GABAergic cortical interneuron is also characterized by its expression of specific pathways and ontologies, including: 1. **Adenosine Deaminase Activity**: This pathway is involved in the regulation of adenosine metabolism and has been implicated in various physiological and pathological processes, including cardiac muscle contraction and synaptic transmission. 2. **Axon Guidance**: This pathway is involved in the regulation of neuronal development and has been implicated in various physiological and pathological processes, including neuronal development and synaptic transmission. 3. **Cytoplasm**: This pathway is involved in the regulation of various cellular processes, including protein localization and transport. 4. **Intracellular Calcium Ion Homeostasis**: This pathway is involved in the regulation of calcium ion homeostasis and has been implicated in various physiological and pathological processes, including cardiac muscle contraction and synaptic transmission. **Clinical Significance** The sncg GABAergic cortical interneuron has been implicated in various clinical conditions, including: 1. **Cardiac Arrhythmias**: The sncg GABAergic cortical interneuron has been implicated in the regulation of cardiac muscle contraction and has been shown to play a role in the development of cardiac arrhythmias. 2. **Neurological Disorders**: The sncg GABAergic cortical interneuron has been implicated in various neurological disorders, including epilepsy, schizophrenia, and autism spectrum disorder. 3. **Sensory Perception**: The sncg GABAergic cortical interneuron has been implicated in the regulation of sensory perception and has been shown to play a role in the development of various sensory disorders. In conclusion, the sncg GABAergic cortical interneuron is a unique cell type that plays a critical role in regulating various physiological and pathological processes, including cardiac muscle contraction, synaptic transmission, and sensory perception. Further research is needed to fully understand the function and significance of this cell type in the context of human health and disease.