Details for: SF3A1
Associated with
Cells (max top 100)
(Marker Scores and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: germ cell (CL0000586)
Fold Change: 2.99
Marker Score: 5,232 - Cell Name: blood cell (CL0000081)
Fold Change: 1.66
Marker Score: 19,252 - Cell Name: double-positive, alpha-beta thymocyte (CL0000809)
Fold Change: 1.52
Marker Score: 2,973 - Cell Name: double negative T regulatory cell (CL0011024)
Fold Change: 1.48
Marker Score: 1,435 - Cell Name: mature alpha-beta T cell (CL0000791)
Fold Change: 1.48
Marker Score: 78,112 - Cell Name: ovarian surface epithelial cell (CL2000064)
Fold Change: 1.44
Marker Score: 3,932 - Cell Name: type A enteroendocrine cell (CL0002067)
Fold Change: 1.44
Marker Score: 582 - Cell Name: CD38-negative naive B cell (CL0002102)
Fold Change: 1.42
Marker Score: 2,967 - Cell Name: plasmablast (CL0000980)
Fold Change: 1.4
Marker Score: 1,864 - Cell Name: naive regulatory T cell (CL0002677)
Fold Change: 1.39
Marker Score: 422 - Cell Name: double negative thymocyte (CL0002489)
Fold Change: 1.38
Marker Score: 1,905 - Cell Name: T-helper 22 cell (CL0001042)
Fold Change: 1.38
Marker Score: 5,912 - Cell Name: granulosa cell (CL0000501)
Fold Change: 1.36
Marker Score: 13,671 - Cell Name: Unknown (CL0002371)
Fold Change: 1.35
Marker Score: 1,437 - Cell Name: mature gamma-delta T cell (CL0000800)
Fold Change: 1.35
Marker Score: 4,255 - Cell Name: oogonial cell (CL0000024)
Fold Change: 1.34
Marker Score: 1,932 - Cell Name: Leydig cell (CL0000178)
Fold Change: 1.34
Marker Score: 1,444 - Cell Name: neural cell (CL0002319)
Fold Change: 1.34
Marker Score: 646 - Cell Name: hematopoietic stem cell (CL0000037)
Fold Change: 1.33
Marker Score: 701 - Cell Name: type I NK T cell (CL0000921)
Fold Change: 1.33
Marker Score: 1,043 - Cell Name: fraction A pre-pro B cell (CL0002045)
Fold Change: 1.31
Marker Score: 1,321 - Cell Name: basal cell of epithelium of trachea (CL1000348)
Fold Change: 1.31
Marker Score: 9,738 - Cell Name: male germ cell (CL0000015)
Fold Change: 1.3
Marker Score: 374 - Cell Name: medullary thymic epithelial cell (CL0002365)
Fold Change: 1.3
Marker Score: 2,128 - Cell Name: Unknown (CL0000548)
Fold Change: 1.3
Marker Score: 945 - Cell Name: central memory CD8-positive, alpha-beta T cell (CL0000907)
Fold Change: 1.28
Marker Score: 3,125 - Cell Name: interstitial cell of ovary (CL0002094)
Fold Change: 1.28
Marker Score: 8,297 - Cell Name: primordial germ cell (CL0000670)
Fold Change: 1.27
Marker Score: 1,595 - Cell Name: CD34-positive, CD38-negative hematopoietic stem cell (CL0001024)
Fold Change: 1.24
Marker Score: 899 - Cell Name: respiratory epithelial cell (CL0002368)
Fold Change: 1.22
Marker Score: 670 - Cell Name: proerythroblast (CL0000547)
Fold Change: 1.2
Marker Score: 817 - Cell Name: CD8-positive, alpha-beta memory T cell, CD45RO-positive (CL0001203)
Fold Change: 1.2
Marker Score: 3,372 - Cell Name: primitive red blood cell (CL0002355)
Fold Change: 1.2
Marker Score: 901 - Cell Name: erythroid progenitor cell, mammalian (CL0001066)
Fold Change: 1.19
Marker Score: 382 - Cell Name: hematopoietic precursor cell (CL0008001)
Fold Change: 1.18
Marker Score: 413 - Cell Name: mucosal invariant T cell (CL0000940)
Fold Change: 1.18
Marker Score: 1,048 - Cell Name: activated CD4-positive, alpha-beta T cell (CL0000896)
Fold Change: 1.18
Marker Score: 851 - Cell Name: CD4-positive, alpha-beta cytotoxic T cell (CL0000934)
Fold Change: 1.17
Marker Score: 1,024 - Cell Name: large pre-B-II cell (CL0000957)
Fold Change: 1.16
Marker Score: 3,157 - Cell Name: effector memory CD4-positive, alpha-beta T cell (CL0000905)
Fold Change: 1.16
Marker Score: 846 - Cell Name: DN3 thymocyte (CL0000807)
Fold Change: 1.15
Marker Score: 572 - Cell Name: effector memory CD8-positive, alpha-beta T cell, terminally differentiated (CL0001062)
Fold Change: 1.14
Marker Score: 1,673 - Cell Name: class switched memory B cell (CL0000972)
Fold Change: 1.13
Marker Score: 1,067 - Cell Name: CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell (CL0000915)
Fold Change: 1.13
Marker Score: 1,599 - Cell Name: mature T cell (CL0002419)
Fold Change: 1.12
Marker Score: 11,106 - Cell Name: naive thymus-derived CD8-positive, alpha-beta T cell (CL0000900)
Fold Change: 1.1
Marker Score: 1,972 - Cell Name: CD14-positive, CD16-positive monocyte (CL0002397)
Fold Change: 1.09
Marker Score: 2,114 - Cell Name: skeletal muscle satellite stem cell (CL0008011)
Fold Change: 1.08
Marker Score: 1,155 - Cell Name: B-1b B cell (CL0000821)
Fold Change: 1.08
Marker Score: 249 - Cell Name: B-1 B cell (CL0000819)
Fold Change: 1.08
Marker Score: 1,883 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: 1.08
Marker Score: 3,203 - Cell Name: erythroid progenitor cell (CL0000038)
Fold Change: 1.06
Marker Score: 1,108 - Cell Name: CD14-positive monocyte (CL0001054)
Fold Change: 1.06
Marker Score: 2,639 - Cell Name: CD16-negative, CD56-bright natural killer cell, human (CL0000938)
Fold Change: 1.05
Marker Score: 864 - Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
Fold Change: 1.05
Marker Score: 6,715 - Cell Name: squamous epithelial cell (CL0000076)
Fold Change: 1.05
Marker Score: 715 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 1.04
Marker Score: 1,536 - Cell Name: malignant cell (CL0001064)
Fold Change: 1.04
Marker Score: 14,004 - Cell Name: cortical thymic epithelial cell (CL0002364)
Fold Change: 1.04
Marker Score: 3,834 - Cell Name: small pre-B-II cell (CL0000954)
Fold Change: 1.03
Marker Score: 1,241 - Cell Name: luminal epithelial cell of mammary gland (CL0002326)
Fold Change: 1.03
Marker Score: 1,823 - Cell Name: oocyte (CL0000023)
Fold Change: 1.02
Marker Score: 253 - Cell Name: kidney epithelial cell (CL0002518)
Fold Change: 1.02
Marker Score: 1,079 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: 1.02
Marker Score: 2,321 - Cell Name: unswitched memory B cell (CL0000970)
Fold Change: 1.01
Marker Score: 593 - Cell Name: papillary tips cell (CL1000597)
Fold Change: 1
Marker Score: 202 - Cell Name: myeloid leukocyte (CL0000766)
Fold Change: 1
Marker Score: 1,205 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 1
Marker Score: 238 - Cell Name: cerebral cortex GABAergic interneuron (CL0010011)
Fold Change: 1
Marker Score: 71,601 - Cell Name: CD4-positive helper T cell (CL0000492)
Fold Change: 0.99
Marker Score: 1,081 - Cell Name: forebrain radial glial cell (CL0013000)
Fold Change: 0.99
Marker Score: 47,825 - Cell Name: early lymphoid progenitor (CL0000936)
Fold Change: 0.99
Marker Score: 486 - Cell Name: hematopoietic cell (CL0000988)
Fold Change: 0.99
Marker Score: 658 - Cell Name: effector CD4-positive, alpha-beta T cell (CL0001044)
Fold Change: 0.99
Marker Score: 922 - Cell Name: absorptive cell (CL0000212)
Fold Change: 0.98
Marker Score: 30,373 - Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
Fold Change: 0.97
Marker Score: 54,472 - Cell Name: Sertoli cell (CL0000216)
Fold Change: 0.97
Marker Score: 5,750 - Cell Name: thymocyte (CL0000893)
Fold Change: 0.97
Marker Score: 1,012 - Cell Name: memory B cell (CL0000787)
Fold Change: 0.97
Marker Score: 731 - Cell Name: DN1 thymic pro-T cell (CL0000894)
Fold Change: 0.96
Marker Score: 298 - Cell Name: dendritic cell, human (CL0001056)
Fold Change: 0.96
Marker Score: 975 - Cell Name: fibroblast of breast (CL4006000)
Fold Change: 0.96
Marker Score: 545 - Cell Name: osteoclast (CL0000092)
Fold Change: 0.95
Marker Score: 474 - Cell Name: glandular epithelial cell (CL0000150)
Fold Change: 0.95
Marker Score: 2,336 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: 0.95
Marker Score: 997 - Cell Name: T follicular helper cell (CL0002038)
Fold Change: 0.95
Marker Score: 785 - Cell Name: pro-B cell (CL0000826)
Fold Change: 0.94
Marker Score: 911 - Cell Name: nasal mucosa goblet cell (CL0002480)
Fold Change: 0.94
Marker Score: 630 - Cell Name: bronchial epithelial cell (CL0002328)
Fold Change: 0.94
Marker Score: 249 - Cell Name: mononuclear phagocyte (CL0000113)
Fold Change: 0.94
Marker Score: 941 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 0.94
Marker Score: 2,377 - Cell Name: adventitial cell (CL0002503)
Fold Change: 0.93
Marker Score: 230 - Cell Name: ciliated columnar cell of tracheobronchial tree (CL0002145)
Fold Change: 0.93
Marker Score: 8,084 - Cell Name: epithelial cell of nephron (CL1000449)
Fold Change: 0.93
Marker Score: 1,943 - Cell Name: hematopoietic multipotent progenitor cell (CL0000837)
Fold Change: 0.93
Marker Score: 454 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.93
Marker Score: 478 - Cell Name: ependymal cell (CL0000065)
Fold Change: 0.93
Marker Score: 323 - Cell Name: BEST4+ intestinal epithelial cell, human (CL4030026)
Fold Change: 0.92
Marker Score: 436 - Cell Name: naive thymus-derived CD4-positive, alpha-beta T cell (CL0000895)
Fold Change: 0.92
Marker Score: 1,581 - Cell Name: skeletal muscle satellite cell (CL0000594)
Fold Change: 0.92
Marker Score: 614
Fold Change: Represents the ratio of the current Marker Score to the Marker Score Threshold, indicating how much the gene expression has changed compared to a baseline.
Marker Score: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Marker Score to the Marker Score Threshold, indicating how much the gene expression has changed compared to a baseline.
Marker Score: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Marker Score to the Marker Score Threshold, indicating how much the gene expression has changed compared to a baseline.
Marker Score: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 2071110179
Symbol: SF3A1_HUMAN
Name: Splicing factor 3A subunit 1
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 7489498
Title: Mammalian splicing factor SF3a120 represents a new member of the SURP family of proteins and is homologous to the essential splicing factor PRP21p of Saccharomyces cerevisiae.
PubMed ID: 7489498
PubMed ID: 15461802
Title: A genome annotation-driven approach to cloning the human ORFeome.
PubMed ID: 15461802
PubMed ID: 10591208
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 10882114
Title: Functional association of U2 snRNP with the ATP-independent spliceosomal complex E.
PubMed ID: 10882114
PubMed ID: 11533230
Title: Domains in human splicing factors SF3a60 and SF3a66 required for binding to SF3a120, assembly of the 17S U2 snRNP, and prespliceosome formation.
PubMed ID: 11533230
PubMed ID: 11991638
Title: Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis.
PubMed ID: 11991638
PubMed ID: 15592455
Title: Immunoaffinity profiling of tyrosine phosphorylation in cancer cells.
PubMed ID: 15592455
DOI: 10.1038/nbt1046
PubMed ID: 17081983
Title: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.
PubMed ID: 17081983
PubMed ID: 19367720
Title: Phosphorylation analysis of primary human T lymphocytes using sequential IMAC and titanium oxide enrichment.
PubMed ID: 19367720
DOI: 10.1021/pr800500r
PubMed ID: 18669648
Title: A quantitative atlas of mitotic phosphorylation.
PubMed ID: 18669648
PubMed ID: 18318008
Title: Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography.
PubMed ID: 18318008
PubMed ID: 19413330
Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.
PubMed ID: 19413330
DOI: 10.1021/ac9004309
PubMed ID: 19690332
Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.
PubMed ID: 19690332
PubMed ID: 19608861
Title: Lysine acetylation targets protein complexes and co-regulates major cellular functions.
PubMed ID: 19608861
PubMed ID: 20068231
Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.
PubMed ID: 20068231
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 21349847
Title: Interaction domains and nuclear targeting signals in subunits of the U2 small nuclear ribonucleoprotein particle-associated splicing factor SF3a.
PubMed ID: 21349847
PubMed ID: 21406692
Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.
PubMed ID: 21406692
PubMed ID: 22223895
Title: Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.
PubMed ID: 22223895
PubMed ID: 23186163
Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.
PubMed ID: 23186163
DOI: 10.1021/pr300630k
PubMed ID: 24275569
Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.
PubMed ID: 24275569
PubMed ID: 25218447
Title: Uncovering global SUMOylation signaling networks in a site-specific manner.
PubMed ID: 25218447
DOI: 10.1038/nsmb.2890
PubMed ID: 25772364
Title: SUMO-2 orchestrates chromatin modifiers in response to DNA damage.
PubMed ID: 25772364
PubMed ID: 28112733
Title: Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation.
PubMed ID: 28112733
DOI: 10.1038/nsmb.3366
PubMed ID: 17098193
Title: Solution structures of the SURP domains and the subunit-assembly mechanism within the splicing factor SF3a complex in 17S U2 snRNP.
PubMed ID: 17098193
PubMed ID: 29360106
Title: Structure of the human activated spliceosome in three conformational states.
PubMed ID: 29360106
DOI: 10.1038/cr.2018.14
PubMed ID: 30315277
Title: Structures of the human pre-catalytic spliceosome and its precursor spliceosome.
PubMed ID: 30315277
PubMed ID: 16959974
Title: The consensus coding sequences of human breast and colorectal cancers.
PubMed ID: 16959974
PubMed ID: 32494006
Title: Molecular architecture of the human 17S U2 snRNP.
PubMed ID: 32494006
PubMed ID: 36797247
Title: Mechanisms of the RNA helicases DDX42 and DDX46 in human U2 snRNP assembly.
PubMed ID: 36797247
Sequence Information:
- Length: 793
- Mass: 88886
- Checksum: 7259F1EC4577305C
- Sequence:
MPAGPVQAVP PPPPVPTEPK QPTEEEASSK EDSAPSKPVV GIIYPPPEVR NIVDKTASFV ARNGPEFEAR IRQNEINNPK FNFLNPNDPY HAYYRHKVSE FKEGKAQEPS AAIPKVMQQQ QQTTQQQLPQ KVQAQVIQET IVPKEPPPEF EFIADPPSIS AFDLDVVKLT AQFVARNGRQ FLTQLMQKEQ RNYQFDFLRP QHSLFNYFTK LVEQYTKILI PPKGLFSKLK KEAENPREVL DQVCYRVEWA KFQERERKKE EEEKEKERVA YAQIDWHDFV VVETVDFQPN EQGNFPPPTT PEELGARILI QERYEKFGES EEVEMEVESD EEDDKQEKAE EPPSQLDQDT QVQDMDEGSD DEEEGQKVPP PPETPMPPPL PPTPDQVIVR KDYDPKASKP LPPAPAPDEY LVSPITGEKI PASKMQEHMR IGLLDPRWLE QRDRSIREKQ SDDEVYAPGL DIESSLKQLA ERRTDIFGVE ETAIGKKIGE EEIQKPEEKV TWDGHSGSMA RTQQAAQANI TLQEQIEAIH KAKGLVPEDD TKEKIGPSKP NEIPQQPPPP SSATNIPSSA PPITSVPRPP TMPPPVRTTV VSAVPVMPRP PMASVVRLPP GSVIAPMPPI IHAPRINVVP MPPSAPPIMA PRPPPMIVPT AFVPAPPVAP VPAPAPMPPV HPPPPMEDEP TSKKLKTEDS LMPEEEFLRR NKGPVSIKVQ VPNMQDKTEW KLNGQVLVFT LPLTDQVSVI KVKIHEATGM PAGKQKLQYE GIFIKDSNSL AYYNMANGAV IHLALKERGG RKK
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.