Details for: CHM
Associated with
Cells (max top 100)
(Marker Score score is uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: lens epithelial cell (CL0002224)
Fold Change: 1.91
Marker Score: 2314 - Cell Name: vip GABAergic cortical interneuron (CL4023016)
Fold Change: 1.91
Marker Score: 72474 - Cell Name: sncg GABAergic cortical interneuron (CL4023015)
Fold Change: 1.83
Marker Score: 14045 - Cell Name: sst GABAergic cortical interneuron (CL4023017)
Fold Change: 1.82
Marker Score: 36267 - Cell Name: caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 1.82
Marker Score: 7025 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 1.75
Marker Score: 107548 - Cell Name: pvalb GABAergic cortical interneuron (CL4023018)
Fold Change: 1.74
Marker Score: 64178 - Cell Name: lamp5 GABAergic cortical interneuron (CL4023011)
Fold Change: 1.73
Marker Score: 25803 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: 1.73
Marker Score: 3788 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: 1.71
Marker Score: 16242 - Cell Name: near-projecting glutamatergic cortical neuron (CL4023012)
Fold Change: 1.7
Marker Score: 15987 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 1.69
Marker Score: 7065 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: 1.69
Marker Score: 14491 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: 1.66
Marker Score: 17176 - Cell Name: vascular leptomeningeal cell (CL4023051)
Fold Change: 1.64
Marker Score: 1883.5 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: 1.58
Marker Score: 926 - Cell Name: chandelier pvalb GABAergic cortical interneuron (CL4023036)
Fold Change: 1.56
Marker Score: 6478 - Cell Name: OFF retinal ganglion cell (CL4023033)
Fold Change: 1.52
Marker Score: 638 - Cell Name: neuron (CL0000540)
Fold Change: 1.52
Marker Score: 6196 - Cell Name: inhibitory interneuron (CL0000498)
Fold Change: 1.51
Marker Score: 6964 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: 1.48
Marker Score: 2289 - Cell Name: Purkinje cell (CL0000121)
Fold Change: 1.4
Marker Score: 47186.5 - Cell Name: renal interstitial pericyte (CL1001318)
Fold Change: 1.38
Marker Score: 1315 - Cell Name: anterior lens cell (CL0002223)
Fold Change: 1.37
Marker Score: 1840.5 - Cell Name: astrocyte of the cerebral cortex (CL0002605)
Fold Change: 1.35
Marker Score: 28817 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: 1.34
Marker Score: 392 - Cell Name: kidney interstitial fibroblast (CL1000692)
Fold Change: 1.28
Marker Score: 2470 - Cell Name: cerebral cortex endothelial cell (CL1001602)
Fold Change: 1.23
Marker Score: 731.5 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: 1.23
Marker Score: 387 - Cell Name: ON retinal ganglion cell (CL4023032)
Fold Change: 1.22
Marker Score: 333 - Cell Name: leptomeningeal cell (CL0000708)
Fold Change: 1.21
Marker Score: 599 - Cell Name: corneal epithelial cell (CL0000575)
Fold Change: 1.19
Marker Score: 1312 - Cell Name: brainstem motor neuron (CL2000047)
Fold Change: 1.05
Marker Score: 612 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: 1.04
Marker Score: 18426 - Cell Name: pulmonary interstitial fibroblast (CL0002241)
Fold Change: 1.03
Marker Score: 827 - Cell Name: cerebellar granule cell precursor (CL0002362)
Fold Change: 1.03
Marker Score: 578.5 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 1.01
Marker Score: 390 - Cell Name: regular atrial cardiac myocyte (CL0002129)
Fold Change: 1.01
Marker Score: 3600 - Cell Name: kidney loop of Henle thin descending limb epithelial cell (CL1001111)
Fold Change: 1
Marker Score: 1081 - Cell Name: cerebral cortex GABAergic interneuron (CL0010011)
Fold Change: 1
Marker Score: 71692 - Cell Name: forebrain radial glial cell (CL0013000)
Fold Change: 1
Marker Score: 47916.5 - Cell Name: absorptive cell (CL0000212)
Fold Change: 0.98
Marker Score: 30391 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: 0.98
Marker Score: 8597 - Cell Name: cardiac neuron (CL0010022)
Fold Change: 0.97
Marker Score: 1211 - Cell Name: GABAergic amacrine cell (CL4030027)
Fold Change: 0.95
Marker Score: 1921 - Cell Name: P/D1 enteroendocrine cell (CL0002268)
Fold Change: 0.94
Marker Score: 352 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 0.94
Marker Score: 2394 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.93
Marker Score: 479 - Cell Name: BEST4+ intestinal epithelial cell, human (CL4030026)
Fold Change: 0.93
Marker Score: 437 - Cell Name: renal alpha-intercalated cell (CL0005011)
Fold Change: 0.92
Marker Score: 484 - Cell Name: oligodendrocyte (CL0000128)
Fold Change: 0.92
Marker Score: 2192 - Cell Name: regular ventricular cardiac myocyte (CL0002131)
Fold Change: 0.91
Marker Score: 20424.5 - Cell Name: renal principal cell (CL0005009)
Fold Change: 0.91
Marker Score: 703 - Cell Name: mesangial cell (CL0000650)
Fold Change: 0.91
Marker Score: 1092.5 - Cell Name: abnormal cell (CL0001061)
Fold Change: 0.9
Marker Score: 2699 - Cell Name: central nervous system macrophage (CL0000878)
Fold Change: 0.9
Marker Score: 446 - Cell Name: corneal endothelial cell (CL0000132)
Fold Change: 0.89
Marker Score: 516 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.88
Marker Score: 30517 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 0.87
Marker Score: 5295 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: 0.87
Marker Score: 919 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 0.86
Marker Score: 309 - Cell Name: stellate neuron (CL0000122)
Fold Change: 0.85
Marker Score: 4553 - Cell Name: transit amplifying cell (CL0009010)
Fold Change: 0.84
Marker Score: 4809 - Cell Name: podocyte (CL0000653)
Fold Change: 0.83
Marker Score: 306 - Cell Name: kidney loop of Henle thin ascending limb epithelial cell (CL1001107)
Fold Change: 0.82
Marker Score: 835 - Cell Name: contractile cell (CL0000183)
Fold Change: 0.82
Marker Score: 446 - Cell Name: oligodendrocyte precursor cell (CL0002453)
Fold Change: 0.82
Marker Score: 1012 - Cell Name: fat cell (CL0000136)
Fold Change: 0.81
Marker Score: 450 - Cell Name: kidney loop of Henle thick ascending limb epithelial cell (CL1001106)
Fold Change: 0.8
Marker Score: 2155 - Cell Name: epicardial adipocyte (CL1000309)
Fold Change: 0.8
Marker Score: 389 - Cell Name: kidney connecting tubule epithelial cell (CL1000768)
Fold Change: 0.8
Marker Score: 1129 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: 0.8
Marker Score: 27105.5 - Cell Name: parietal epithelial cell (CL1000452)
Fold Change: 0.79
Marker Score: 288 - Cell Name: early T lineage precursor (CL0002425)
Fold Change: 0.79
Marker Score: 606 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: 0.79
Marker Score: 317 - Cell Name: choroid plexus epithelial cell (CL0000706)
Fold Change: 0.78
Marker Score: 719 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: 0.78
Marker Score: 266 - Cell Name: A2 amacrine cell (CL0004219)
Fold Change: 0.78
Marker Score: 248 - Cell Name: intestinal epithelial cell (CL0002563)
Fold Change: 0.78
Marker Score: 1264 - Cell Name: lactocyte (CL0002325)
Fold Change: 0.77
Marker Score: 12410 - Cell Name: hepatocyte (CL0000182)
Fold Change: 0.76
Marker Score: 521 - Cell Name: cholangiocyte (CL1000488)
Fold Change: 0.76
Marker Score: 285 - Cell Name: basal cell (CL0000646)
Fold Change: 0.75
Marker Score: 970 - Cell Name: endothelial cell of pericentral hepatic sinusoid (CL0019022)
Fold Change: 0.75
Marker Score: 800 - Cell Name: primordial germ cell (CL0000670)
Fold Change: 0.74
Marker Score: 930.5 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: 0.74
Marker Score: 1676 - Cell Name: fibroblast of breast (CL4006000)
Fold Change: 0.73
Marker Score: 417 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.73
Marker Score: 1073 - Cell Name: primitive red blood cell (CL0002355)
Fold Change: 0.72
Marker Score: 543 - Cell Name: Cajal-Retzius cell (CL0000695)
Fold Change: 0.72
Marker Score: 374 - Cell Name: hepatic stellate cell (CL0000632)
Fold Change: 0.72
Marker Score: 270 - Cell Name: lung goblet cell (CL1000143)
Fold Change: 0.71
Marker Score: 206 - Cell Name: supporting cell (CL0000630)
Fold Change: 0.71
Marker Score: 1337 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: 0.7
Marker Score: 11007 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.7
Marker Score: 2947.5 - Cell Name: taste receptor cell (CL0000209)
Fold Change: 0.7
Marker Score: 606 - Cell Name: glandular epithelial cell (CL0000150)
Fold Change: 0.7
Marker Score: 1722 - Cell Name: centrilobular region hepatocyte (CL0019029)
Fold Change: 0.7
Marker Score: 4502 - Cell Name: rod bipolar cell (CL0000751)
Fold Change: 0.7
Marker Score: 364 - Cell Name: melanocyte (CL0000148)
Fold Change: 0.7
Marker Score: 282
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Other Information
Genular Protein ID: 3113907263
Symbol: RAE1_HUMAN
Name: Rab proteins geranylgeranyltransferase component A 1
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 7981670
Title: Cloning and characterization of the human choroideremia gene.
PubMed ID: 7981670
DOI: 10.1093/hmg/3.7.1041
PubMed ID: 15772651
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 1549574
Title: Isolation of a candidate gene for choroideremia.
PubMed ID: 1549574
PubMed ID: 2215697
Title: Cloning of a gene that is rearranged in patients with choroideraemia.
PubMed ID: 2215697
DOI: 10.1038/347674a0
PubMed ID: 1598901
Title: Detection and characterization of point mutations in the choroideremia candidate gene by PCR-SSCP analysis and direct DNA sequencing.
PubMed ID: 1598901
PubMed ID: 1904992
PubMed ID: 7957092
Title: Rab escort protein-1 is a multifunctional protein that accompanies newly prenylated rab proteins to their target membranes.
PubMed ID: 7957092
PubMed ID: 18532927
Title: Rab geranylgeranylation occurs preferentially via the pre-formed REP-RGGT complex and is regulated by geranylgeranyl pyrophosphate.
PubMed ID: 18532927
DOI: 10.1042/bj20080662
PubMed ID: 19413330
Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.
PubMed ID: 19413330
DOI: 10.1021/ac9004309
PubMed ID: 21905166
Title: Comprehensive mutation analysis (20 families) of the choroideremia gene reveals a missense variant that prevents the binding of REP1 with rab geranylgeranyl transferase.
PubMed ID: 21905166
DOI: 10.1002/humu.21591
PubMed ID: 24275569
Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.
PubMed ID: 24275569
PubMed ID: 26824392
Title: Phosphoproteomics reveals that Parkinson's disease kinase LRRK2 regulates a subset of Rab GTPases.
PubMed ID: 26824392
DOI: 10.7554/elife.12813
PubMed ID: 29125462
Title: Systematic proteomic analysis of LRRK2-mediated Rab GTPase phosphorylation establishes a connection to ciliogenesis.
PubMed ID: 29125462
DOI: 10.7554/elife.31012
PubMed ID: 7951216
PubMed ID: 19427510
Title: The functional effect of pathogenic mutations in Rab escort protein 1.
PubMed ID: 19427510
Sequence Information:
- Length: 653
- Mass: 73476
- Checksum: 7CFFAECE7BA1F3AF
- Sequence:
MADTLPSEFD VIVIGTGLPE SIIAAACSRS GRRVLHVDSR SYYGGNWASF SFSGLLSWLK EYQENSDIVS DSPVWQDQIL ENEEAIALSR KDKTIQHVEV FCYASQDLHE DVEEAGALQK NHALVTSANS TEAADSAFLP TEDESLSTMS CEMLTEQTPS SDPENALEVN GAEVTGEKEN HCDDKTCVPS TSAEDMSENV PIAEDTTEQP KKNRITYSQI IKEGRRFNID LVSKLLYSRG LLIDLLIKSN VSRYAEFKNI TRILAFREGR VEQVPCSRAD VFNSKQLTMV EKRMLMKFLT FCMEYEKYPD EYKGYEEITF YEYLKTQKLT PNLQYIVMHS IAMTSETASS TIDGLKATKN FLHCLGRYGN TPFLFPLYGQ GELPQCFCRM CAVFGGIYCL RHSVQCLVVD KESRKCKAII DQFGQRIISE HFLVEDSYFP ENMCSRVQYR QISRAVLITD RSVLKTDSDQ QISILTVPAE EPGTFAVRVI ELCSSTMTCM KGTYLVHLTC TSSKTAREDL ESVVQKLFVP YTEMEIENEQ VEKPRILWAL YFNMRDSSDI SRSCYNDLPS NVYVCSGPDC GLGNDNAVKQ AETLFQEICP NEDFCPPPPN PEDIILDGDS LQPEASESSA IPEANSETFK ESTNLGNLEE SSE
Genular Protein ID: 3829388678
Symbol: B4DRL9_HUMAN
Name: N/A
UniProtKB Accession Codes:
Database IDs:
Sequence Information:
- Length: 505
- Mass: 57265
- Checksum: 15F801C543052012
- Sequence:
MSCEMLTEQT PSSDPENALE VNGAEVTGEK ENHCDDKTCV PSTSAEDMSE NVPIAEDTTE QPKKNRITYS QIIKEGRRFN IDLVSKLLYS RGLLIDLLIK SNVSRYAEFK NITRILAFRE GRVEQVPCSR ADVFNSKQLT MVEKRMLMKF LTFCMEYEKY PDEYKGYEEI TFYEYLKTQK LTPNLQYIVM HSIAMTSETA SSTIDGLKAT KNFLHCLGRY GNTPFLFPLY GQGELPQCFC RMCAVFGGIY CLRHSVQCLV VDKESRKCKA IIDQFGQRII SEHFLVEDSY FPENMCSRVQ YRQISRAVLI TDRSVLKTDS DQQISILTVP AEEPGTFAVR VIELCSSTMT CMKGTYLVHL TCTSSKTARE DLESVVQKLF VPYTEMEIEN EQVEKPRILW ALYFNMRDSS DISRSCYNDL PSNVYVCSGP DCGLGNDNAV KQAETLFQEI CPNEDFCPPP PNPEDIILDG DSLQPEASES SAIPEANSET FKESTNLGNL EESSE
Genular Protein ID: 2027369497
Symbol: A8K545_HUMAN
Name: N/A
UniProtKB Accession Codes:
Database IDs:
Sequence Information:
- Length: 653
- Mass: 73492
- Checksum: ED59BECE7E32A271
- Sequence:
MADTLPSEFD VIVIGTGLPE SIIAAACSRS GRRVLHVDSR SYYGGNWASF SFSGLLSWLK EYQENSDIVS DSPVWQDQIL ENEEAIALCR KDKTIQHVEV FCYASQDLHE DVEEAGALQK NHALVTSANS TEAADSAFLP TEDESLSTMS CEMLTEQTPS SDPENALEVN GAEVTGEKEN HCDDKTCVPS TSAEDMSENV PIAEDTTEQP KKNRITYSQI IKEGRRFNID LVSKLLYSRG LLIDLLIKSN VSRYAEFKNI TRILAFREGR VEQVPCSRAD VFNSKQLTMV EKRMLMKFLT FCMEYEKYPD EYKGYEEITF YEYLKTQKLT PNLQYIVMHS IAMTSETASS TIDGLKATKN FLHCLGRYGN TPFLFPLYGQ GELPQCFCRM CAVFGGIYCL RHSVQCLVVD KESRKCKAII DQFGQRIISE HFLVEDSYFP ENMCSRVQYR QISRAVLITD RSVLKTDSDQ QISILTVPAE EPGTFAVRVI ELCSSTMTCM KGTYLVHLTC TSSKTAREDL ESVVQKLFVP YTEMEIENEQ VEKPRILWAL YFNMRDSSDI SRSCYNDLPS NVYVCSGPDC GLGNDNAVKQ AETLFQEICP NEDFCPPPPN PEDIILDGDS LQPEASESSA IPEANSETFK ESTNLGNLEE SSE
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. For the full schema, download it here.