Details for: CLCN1
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 6.8206
Cell Significance Index: -1.7300 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: 1.8748
Cell Significance Index: 114.9400 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 1.4842
Cell Significance Index: -1.8300 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: 1.2661
Cell Significance Index: 40.5500 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: 0.6753
Cell Significance Index: 14.6300 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.5371
Cell Significance Index: 102.2100 - Cell Name: type I muscle cell (CL0002211)
Fold Change: 0.4918
Cell Significance Index: 12.0000 - Cell Name: epithelial cell of esophagus (CL0002252)
Fold Change: 0.4459
Cell Significance Index: 2.9600 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.4456
Cell Significance Index: 44.0800 - Cell Name: liver dendritic cell (CL2000055)
Fold Change: 0.4094
Cell Significance Index: 1.0800 - Cell Name: fraction A pre-pro B cell (CL0002045)
Fold Change: 0.3795
Cell Significance Index: 4.4900 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: 0.3381
Cell Significance Index: 7.2000 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.3210
Cell Significance Index: 289.8000 - Cell Name: type II muscle cell (CL0002212)
Fold Change: 0.3031
Cell Significance Index: 4.8900 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 0.2261
Cell Significance Index: 36.7800 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 0.2148
Cell Significance Index: 23.3700 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: 0.2019
Cell Significance Index: 5.1900 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.1908
Cell Significance Index: 9.9100 - Cell Name: cell of skeletal muscle (CL0000188)
Fold Change: 0.1569
Cell Significance Index: 2.0100 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 0.1333
Cell Significance Index: 8.0000 - Cell Name: myeloid lineage restricted progenitor cell (CL0000839)
Fold Change: 0.1206
Cell Significance Index: 1.6900 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 0.1088
Cell Significance Index: 7.5300 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: 0.1070
Cell Significance Index: 1.4600 - Cell Name: keratocyte (CL0002363)
Fold Change: 0.1053
Cell Significance Index: 1.6700 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: 0.0893
Cell Significance Index: 1.5300 - Cell Name: secondary lymphoid organ macrophage (CL0000867)
Fold Change: 0.0790
Cell Significance Index: 0.5800 - Cell Name: obsolete epithelial cell of alveolus of lung (CL0010003)
Fold Change: 0.0782
Cell Significance Index: 1.9500 - Cell Name: stratified epithelial cell (CL0000079)
Fold Change: 0.0684
Cell Significance Index: 2.5100 - Cell Name: mesangial cell (CL0000650)
Fold Change: 0.0553
Cell Significance Index: 0.7000 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.0378
Cell Significance Index: 6.8100 - Cell Name: decidual cell (CL2000002)
Fold Change: 0.0274
Cell Significance Index: 0.4400 - Cell Name: slow muscle cell (CL0000189)
Fold Change: 0.0194
Cell Significance Index: 0.2900 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 0.0145
Cell Significance Index: 2.9100 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.0117
Cell Significance Index: 0.5300 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: 0.0086
Cell Significance Index: 0.2400 - Cell Name: transit amplifying cell of small intestine (CL0009012)
Fold Change: 0.0077
Cell Significance Index: 0.1600 - Cell Name: corneal epithelial cell (CL0000575)
Fold Change: 0.0070
Cell Significance Index: 0.1000 - Cell Name: umbrella cell of urothelium (CL4030056)
Fold Change: 0.0043
Cell Significance Index: 0.0400 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 0.0025
Cell Significance Index: 0.3400 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.0023
Cell Significance Index: 0.8300 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 0.0019
Cell Significance Index: 0.2300 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: 0.0017
Cell Significance Index: 0.0600 - Cell Name: neutrophil progenitor cell (CL0000834)
Fold Change: 0.0009
Cell Significance Index: 0.0200 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 0.0007
Cell Significance Index: 0.1300 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.0000
Cell Significance Index: 0.0000 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: -0.0001
Cell Significance Index: -0.1600 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0004
Cell Significance Index: -0.6200 - Cell Name: anterior lens cell (CL0002223)
Fold Change: -0.0005
Cell Significance Index: -0.8300 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: -0.0009
Cell Significance Index: -1.2600 - Cell Name: medial ganglionic eminence derived interneuron (CL4023063)
Fold Change: -0.0014
Cell Significance Index: -0.0200 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: -0.0019
Cell Significance Index: -1.1800 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0023
Cell Significance Index: -1.6900 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0026
Cell Significance Index: -1.1900 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0026
Cell Significance Index: -1.9900 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0027
Cell Significance Index: -1.5200 - Cell Name: cell in vitro (CL0001034)
Fold Change: -0.0030
Cell Significance Index: -1.6400 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.0034
Cell Significance Index: -0.9700 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.0036
Cell Significance Index: -0.5300 - Cell Name: eukaryotic cell (CL0000255)
Fold Change: -0.0045
Cell Significance Index: -0.1900 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: -0.0047
Cell Significance Index: -0.5500 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: -0.0048
Cell Significance Index: -0.1200 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: -0.0049
Cell Significance Index: -0.2300 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: -0.0053
Cell Significance Index: -0.9100 - Cell Name: neuroendocrine cell (CL0000165)
Fold Change: -0.0055
Cell Significance Index: -0.0700 - Cell Name: ependymal cell (CL0000065)
Fold Change: -0.0076
Cell Significance Index: -0.0900 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: -0.0089
Cell Significance Index: -0.6600 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.0094
Cell Significance Index: -1.9800 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.0123
Cell Significance Index: -1.2600 - Cell Name: lactocyte (CL0002325)
Fold Change: -0.0125
Cell Significance Index: -1.6200 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.0143
Cell Significance Index: -1.6400 - Cell Name: retinal blood vessel endothelial cell (CL0002585)
Fold Change: -0.0155
Cell Significance Index: -0.2000 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: -0.0156
Cell Significance Index: -1.8400 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.0161
Cell Significance Index: -1.6800 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.0178
Cell Significance Index: -1.2000 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: -0.0181
Cell Significance Index: -1.1100 - Cell Name: Purkinje cell (CL0000121)
Fold Change: -0.0196
Cell Significance Index: -0.4300 - Cell Name: keratinocyte (CL0000312)
Fold Change: -0.0206
Cell Significance Index: -0.5200 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: -0.0250
Cell Significance Index: -1.9200 - Cell Name: lens fiber cell (CL0011004)
Fold Change: -0.0262
Cell Significance Index: -0.8300 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: -0.0290
Cell Significance Index: -0.7900 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: -0.0306
Cell Significance Index: -1.4400 - Cell Name: early pro-B cell (CL0002046)
Fold Change: -0.0310
Cell Significance Index: -2.0000 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: -0.0318
Cell Significance Index: -0.6700 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: -0.0331
Cell Significance Index: -1.8600 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: -0.0335
Cell Significance Index: -1.7500 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -0.0336
Cell Significance Index: -1.1000 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: -0.0339
Cell Significance Index: -1.0800 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.0355
Cell Significance Index: -1.5700 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: -0.0363
Cell Significance Index: -1.2700 - Cell Name: early T lineage precursor (CL0002425)
Fold Change: -0.0372
Cell Significance Index: -0.5400 - Cell Name: BEST4+ enteroycte (CL4030026)
Fold Change: -0.0385
Cell Significance Index: -0.5800 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: -0.0396
Cell Significance Index: -1.0600 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.0407
Cell Significance Index: -1.5400 - Cell Name: granulocyte (CL0000094)
Fold Change: -0.0431
Cell Significance Index: -0.5200 - Cell Name: pvalb GABAergic cortical interneuron (CL4023018)
Fold Change: -0.0433
Cell Significance Index: -0.9200 - Cell Name: epithelial cell of lacrimal sac (CL1000436)
Fold Change: -0.0445
Cell Significance Index: -0.3200 - Cell Name: near-projecting glutamatergic cortical neuron (CL4023012)
Fold Change: -0.0481
Cell Significance Index: -1.2000 - Cell Name: cerebral cortex endothelial cell (CL1001602)
Fold Change: -0.0482
Cell Significance Index: -0.9800 - Cell Name: neuron (CL0000540)
Fold Change: -0.0485
Cell Significance Index: -0.4600 - Cell Name: kidney epithelial cell (CL0002518)
Fold Change: -0.0508
Cell Significance Index: -1.5000
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 113988378
Symbol: CLCN1_HUMAN
Name: Chloride channel protein 1
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 8112288
Title: Multimeric structure of ClC-1 chloride channel revealed by mutations in dominant myotonia congenita (Thomsen).
PubMed ID: 8112288
PubMed ID: 12690205
Title: Human chromosome 7: DNA sequence and biology.
PubMed ID: 12690205
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 1379744
Title: The skeletal muscle chloride channel in dominant and recessive human myotonia.
PubMed ID: 1379744
PubMed ID: 7981750
Title: Molecular basis of Thomsen's disease (autosomal dominant myotonia congenita).
PubMed ID: 7981750
DOI: 10.1038/ng0493-305
PubMed ID: 8130334
Title: Low single channel conductance of the major skeletal muscle chloride channel, ClC-1.
PubMed ID: 8130334
PubMed ID: 9122265
Title: A mutation in autosomal dominant myotonia congenita affects pore properties of the muscle chloride channel.
PubMed ID: 9122265
PubMed ID: 9565403
Title: Permeation and block of the skeletal muscle chloride channel, ClC-1, by foreign anions.
PubMed ID: 9565403
PubMed ID: 10051520
Title: The muscle chloride channel ClC-1 has a double-barreled appearance that is differentially affected in dominant and recessive myotonia.
PubMed ID: 10051520
PubMed ID: 10962018
Title: Fast and slow gating relaxations in the muscle chloride channel CLC-1.
PubMed ID: 10962018
PubMed ID: 12456816
Title: A novel alteration of muscle chloride channel gating in myotonia levior.
PubMed ID: 12456816
PubMed ID: 16027167
Title: Cytoplasmic ATP-sensing domains regulate gating of skeletal muscle ClC-1 chloride channels.
PubMed ID: 16027167
PubMed ID: 37892996
Title: ClC-1 Chloride Channel: Inputs on the Structure-Function Relationship of Myotonia Congenita-Causing Mutations.
PubMed ID: 37892996
PubMed ID: 29809153
Title: Structure of the CLC-1 chloride channel from Homo sapiens.
PubMed ID: 29809153
DOI: 10.7554/elife.36629
PubMed ID: 31022181
Title: Structure of the human ClC-1 chloride channel.
PubMed ID: 31022181
PubMed ID: 7951242
Title: Genomic organization of the human muscle chloride channel ClC-1 and analysis of novel mutations leading to Becker-type myotonia.
PubMed ID: 7951242
DOI: 10.1093/hmg/3.6.941
PubMed ID: 7981681
Title: Proof of a non-functional muscle chloride channel in recessive myotonia congenita (Becker) by detection of a 4 base pair deletion.
PubMed ID: 7981681
DOI: 10.1093/hmg/3.7.1123
PubMed ID: 7874130
Title: Nonsense and missense mutations of the muscle chloride channel gene in patients with myotonia congenita.
PubMed ID: 7874130
PubMed ID: 8533761
Title: Spectrum of mutations in the major human skeletal muscle chloride channel gene (CLCN1) leading to myotonia.
PubMed ID: 8533761
PubMed ID: 7581380
PubMed ID: 8845168
Title: Mutations in dominant human myotonia congenita drastically alter the voltage dependence of the CIC-1 chloride channel.
PubMed ID: 8845168
PubMed ID: 8571958
Title: Novel muscle chloride channel mutations and their effects on heterozygous carriers.
PubMed ID: 8571958
PubMed ID: 9736777
Title: ClC-1 chloride channel mutations in myotonia congenita: variable penetrance of mutations shifting the voltage dependence.
PubMed ID: 9736777
PubMed ID: 10215406
Title: Identification of five new mutations and three novel polymorphisms in the muscle chloride channel gene (CLCN1) in 20 Italian patients with dominant and recessive myotonia congenita.
PubMed ID: 10215406
DOI: 10.1002/(sici)1098-1004(1998)11:4<331::aid-humu12>3.0.co;2-3
PubMed ID: 9566422
Title: Novel muscle chloride channel (CLCN1) mutations in myotonia congenita with various modes of inheritance including incomplete dominance and penetrance.
PubMed ID: 9566422
PubMed ID: 10644771
Title: Mechanism of inverted activation of ClC-1 channels caused by a novel myotonia congenita mutation.
PubMed ID: 10644771
PubMed ID: 11113225
Title: A 'dystrophic' variant of autosomal recessive myotonia congenita caused by novel mutations in the CLCN1 gene.
PubMed ID: 11113225
PubMed ID: 12661046
Title: Decrement of compound muscle action potential is related to mutation type in myotonia congenita.
PubMed ID: 12661046
DOI: 10.1002/mus.10347
PubMed ID: 16959974
Title: The consensus coding sequences of human breast and colorectal cancers.
PubMed ID: 16959974
PubMed ID: 19697366
Title: Myotonia congenita in a large consanguineous Arab family: insight into the clinical spectrum of carriers and double heterozygotes of a novel mutation in the chloride channel CLCN1 gene.
PubMed ID: 19697366
DOI: 10.1002/mus.21525
PubMed ID: 22521272
Title: Myotonia congenita: novel mutations in CLCN1 gene and functional characterizations in Italian patients.
PubMed ID: 22521272
PubMed ID: 22641783
Title: Disease-causing mutations C277R and C277Y modify gating of human ClC-1 chloride channels in myotonia congenita.
PubMed ID: 22641783
PubMed ID: 26096614
Title: ClC-1 mutations in myotonia congenita patients: insights into molecular gating mechanisms and genotype-phenotype correlation.
PubMed ID: 26096614
DOI: 10.1113/jp270358
PubMed ID: 26007199
Title: Clinical, molecular, and functional characterization of CLCN1 mutations in three families with recessive myotonia congenita.
PubMed ID: 26007199
PubMed ID: 26502825
Title: Impaired surface membrane insertion of homo- and heterodimeric human muscle chloride channels carrying amino-terminal myotonia-causing mutations.
PubMed ID: 26502825
DOI: 10.1038/srep15382
PubMed ID: 26510092
Title: Identification and functional characterization of CLCN1 mutations found in nondystrophic myotonia patients.
PubMed ID: 26510092
DOI: 10.1002/humu.22916
PubMed ID: 27653901
Title: A case of non-dystrophic myotonia with concomitant mutations in the SCN4A and CLCN1 genes.
PubMed ID: 27653901
PubMed ID: 27666773
Title: Thomsen disease with ptosis and abnormal MR findings.
PubMed ID: 27666773
Sequence Information:
- Length: 988
- Mass: 108626
- Checksum: CA838BCD2AF3CA68
- Sequence:
MEQSRSQQRG GEQSWWGSDP QYQYMPFEHC TSYGLPSENG GLQHRLRKDA GPRHNVHPTQ IYGHHKEQFS DREQDIGMPK KTGSSSTVDS KDEDHYSKCQ DCIHRLGQVV RRKLGEDGIF LVLLGLLMAL VSWSMDYVSA KSLQAYKWSY AQMQPSLPLQ FLVWVTFPLV LILFSALFCH LISPQAVGSG IPEMKTILRG VVLKEYLTMK AFVAKVVALT AGLGSGIPVG KEGPFVHIAS ICAAVLSKFM SVFCGVYEQP YYYSDILTVG CAVGVGCCFG TPLGGVLFSI EVTSTYFAVR NYWRGFFAAT FSAFVFRVLA VWNKDAVTIT ALFRTNFRMD FPFDLKELPA FAAIGICCGL LGAVFVYLHR QVMLGVRKHK ALSQFLAKHR LLYPGIVTFV IASFTFPPGM GQFMAGELMP REAISTLFDN NTWVKHAGDP ESLGQSAVWI HPRVNVVIII FLFFVMKFWM SIVATTMPIP CGGFMPVFVL GAAFGRLVGE IMAMLFPDGI LFDDIIYKIL PGGYAVIGAA ALTGAVSHTV STAVICFELT GQIAHILPMM VAVILANMVA QSLQPSLYDS IIQVKKLPYL PDLGWNQLSK YTIFVEDIMV RDVKFVSASY TYGELRTLLQ TTTVKTLPLV DSKDSMILLG SVERSELQAL LQRHLCPERR LRAAQEMARK LSELPYDGKA RLAGEGLPGA PPGRPESFAF VDEDEDEDLS GKSELPPSLA LHPSTTAPLS PEEPNGPLPG HKQQPEAPEP AGQRPSIFQS LLHCLLGRAR PTKKKTTQDS TDLVDNMSPE EIEAWEQEQL SQPVCFDSCC IDQSPFQLVE QTTLHKTHTL FSLLGLHLAY VTSMGKLRGV LALEELQKAI EGHTKSGVQL RPPLASFRNT TSTRKSTGAP PSSAENWNLP EDRPGATGTG DVIAASPETP VPSPSPEPPL SLAPGKVEGE LEELELVESP GLEEELADIL QGPSLRSTDE EDEDELIL
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.