Details for: CLCN2
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 72.7763
Cell Significance Index: -11.3200 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 46.4432
Cell Significance Index: -11.7800 - Cell Name: ciliated cell of the bronchus (CL0002332)
Fold Change: 10.1389
Cell Significance Index: -9.6800 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 9.5259
Cell Significance Index: -11.7500 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 2.9979
Cell Significance Index: -11.8300 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 1.3499
Cell Significance Index: 256.9000 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 1.3179
Cell Significance Index: 130.3700 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 1.3006
Cell Significance Index: 58.9500 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.9161
Cell Significance Index: 26.4000 - Cell Name: epithelial cell of pancreas (CL0000083)
Fold Change: 0.8150
Cell Significance Index: 13.4300 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: 0.7528
Cell Significance Index: 16.3100 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: 0.6867
Cell Significance Index: 18.4000 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 0.6621
Cell Significance Index: 39.7500 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.6033
Cell Significance Index: 544.7600 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 0.5096
Cell Significance Index: 55.4300 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 0.3773
Cell Significance Index: 61.3600 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: 0.3716
Cell Significance Index: 5.0700 - Cell Name: transit amplifying cell of small intestine (CL0009012)
Fold Change: 0.3129
Cell Significance Index: 6.4900 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 0.2781
Cell Significance Index: 19.2400 - Cell Name: helper T cell (CL0000912)
Fold Change: 0.2231
Cell Significance Index: 3.1700 - Cell Name: leptomeningeal cell (CL0000708)
Fold Change: 0.2168
Cell Significance Index: 4.6400 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 0.1977
Cell Significance Index: 39.6700 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: 0.1892
Cell Significance Index: 4.0300 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.1256
Cell Significance Index: 45.0500 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.1253
Cell Significance Index: 6.5100 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.1037
Cell Significance Index: 71.7300 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: 0.0668
Cell Significance Index: 1.6700 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 0.0575
Cell Significance Index: 11.4200 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.0309
Cell Significance Index: 5.5700 - Cell Name: odontoblast (CL0000060)
Fold Change: 0.0239
Cell Significance Index: 3.0600 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: 0.0202
Cell Significance Index: 0.7100 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.0135
Cell Significance Index: 7.3700 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.0118
Cell Significance Index: 5.2100 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: 0.0038
Cell Significance Index: 0.2400 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.0031
Cell Significance Index: 5.8900 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: 0.0021
Cell Significance Index: 2.9000 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 0.0010
Cell Significance Index: 0.1400 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0022
Cell Significance Index: -3.4100 - Cell Name: anterior lens cell (CL0002223)
Fold Change: -0.0037
Cell Significance Index: -6.8400 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: -0.0102
Cell Significance Index: -6.4600 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0110
Cell Significance Index: -8.0700 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0151
Cell Significance Index: -11.4500 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0171
Cell Significance Index: -12.6700 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0190
Cell Significance Index: -8.6400 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0205
Cell Significance Index: -12.8200 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0223
Cell Significance Index: -12.5500 - Cell Name: Purkinje cell (CL0000121)
Fold Change: -0.0274
Cell Significance Index: -0.6000 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: -0.0303
Cell Significance Index: -3.7200 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: -0.0320
Cell Significance Index: -1.4900 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.0337
Cell Significance Index: -9.6900 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: -0.0376
Cell Significance Index: -1.0500 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.0426
Cell Significance Index: -6.1900 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.0443
Cell Significance Index: -5.0800 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: -0.0454
Cell Significance Index: -5.2900 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: -0.0521
Cell Significance Index: -2.9300 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: -0.0584
Cell Significance Index: -9.9800 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.0617
Cell Significance Index: -2.7300 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: -0.0625
Cell Significance Index: -3.8400 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: -0.0653
Cell Significance Index: -2.0900 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.0672
Cell Significance Index: -6.8600 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.0692
Cell Significance Index: -14.5800 - Cell Name: medial ganglionic eminence derived interneuron (CL4023063)
Fold Change: -0.0740
Cell Significance Index: -1.0600 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: -0.0769
Cell Significance Index: -5.4400 - Cell Name: lactocyte (CL0002325)
Fold Change: -0.0783
Cell Significance Index: -10.1100 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: -0.0811
Cell Significance Index: -6.2300 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: -0.0954
Cell Significance Index: -11.2600 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.1059
Cell Significance Index: -11.0300 - Cell Name: intestinal epithelial cell (CL0002563)
Fold Change: -0.1096
Cell Significance Index: -1.1400 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.1122
Cell Significance Index: -4.2500 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.1137
Cell Significance Index: -6.9700 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.1138
Cell Significance Index: -7.6500 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: -0.1168
Cell Significance Index: -3.1800 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.1338
Cell Significance Index: -10.6000 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: -0.1367
Cell Significance Index: -10.1900 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: -0.1400
Cell Significance Index: -7.3500 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: -0.1463
Cell Significance Index: -7.3900 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: -0.1509
Cell Significance Index: -7.8600 - Cell Name: early pro-B cell (CL0002046)
Fold Change: -0.1553
Cell Significance Index: -10.0200 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: -0.1779
Cell Significance Index: -8.3600 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: -0.1809
Cell Significance Index: -4.6500 - Cell Name: pvalb GABAergic cortical interneuron (CL4023018)
Fold Change: -0.1889
Cell Significance Index: -4.0100 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: -0.2030
Cell Significance Index: -4.2500 - Cell Name: BEST4+ enteroycte (CL4030026)
Fold Change: -0.2256
Cell Significance Index: -3.4000 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.2294
Cell Significance Index: -7.9700 - Cell Name: neuron associated cell (CL0000095)
Fold Change: -0.2494
Cell Significance Index: -10.2200 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: -0.2544
Cell Significance Index: -4.3600 - Cell Name: placental villous trophoblast (CL2000060)
Fold Change: -0.2547
Cell Significance Index: -6.8000 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: -0.2587
Cell Significance Index: -4.3300 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: -0.2603
Cell Significance Index: -9.1200 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -0.2642
Cell Significance Index: -8.6500 - Cell Name: paneth cell of colon (CL0009009)
Fold Change: -0.2796
Cell Significance Index: -4.1900 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: -0.2798
Cell Significance Index: -8.9100 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: -0.2856
Cell Significance Index: -8.1500 - Cell Name: proerythroblast (CL0000547)
Fold Change: -0.2861
Cell Significance Index: -4.1000 - Cell Name: skeletal muscle fibroblast (CL0011027)
Fold Change: -0.2863
Cell Significance Index: -1.9400 - Cell Name: decidual cell (CL2000002)
Fold Change: -0.2942
Cell Significance Index: -4.7200 - Cell Name: lamp5 GABAergic cortical interneuron (CL4023011)
Fold Change: -0.2999
Cell Significance Index: -6.4800 - Cell Name: eukaryotic cell (CL0000255)
Fold Change: -0.3026
Cell Significance Index: -13.1600 - Cell Name: granulosa cell (CL0000501)
Fold Change: -0.3088
Cell Significance Index: -8.1200 - Cell Name: cortical interneuron (CL0008031)
Fold Change: -0.3148
Cell Significance Index: -7.5500
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 2200447874
Symbol: CLCN2_HUMAN
Name: Chloride channel protein 2
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 7795595
Title: Cloning of a putative human voltage-gated chloride channel (ClC-2) cDNA widely expressed in human tissues.
PubMed ID: 7795595
DOI: 10.1093/hmg/4.3.407
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 16641997
Title: The DNA sequence, annotation and analysis of human chromosome 3.
PubMed ID: 16641997
DOI: 10.1038/nature04728
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 10198195
Title: Expression of CLCN voltage-gated chloride channel genes in human blood vessels.
PubMed ID: 10198195
PubMed ID: 12612585
Title: Mutations in CLCN2 encoding a voltage-gated chloride channel are associated with idiopathic generalized epilepsies.
PubMed ID: 12612585
DOI: 10.1038/ng1121
PubMed ID: 19710717
PubMed ID: 16155254
Title: Basolateral localization of native ClC-2 chloride channels in absorptive intestinal epithelial cells and basolateral sorting encoded by a CBS-2 domain di-leucine motif.
PubMed ID: 16155254
DOI: 10.1242/jcs.02525
PubMed ID: 17567819
Title: Leukoencephalopathy upon disruption of the chloride channel ClC-2.
PubMed ID: 17567819
PubMed ID: 22405205
Title: GlialCAM, a protein defective in a leukodystrophy, serves as a ClC-2 Cl(-) channel auxiliary subunit.
PubMed ID: 22405205
PubMed ID: 22814378
Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.
PubMed ID: 22814378
PubMed ID: 23186163
Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.
PubMed ID: 23186163
DOI: 10.1021/pr300630k
PubMed ID: 23632988
Title: Regulation of ClC-2 gating by intracellular ATP.
PubMed ID: 23632988
PubMed ID: 29403011
Title: CLCN2 chloride channel mutations in familial hyperaldosteronism type II.
PubMed ID: 29403011
PubMed ID: 29403012
Title: A gain-of-function mutation in the CLCN2 chloride channel gene causes primary aldosteronism.
PubMed ID: 29403012
PubMed ID: 38345841
Title: CryoEM structures of the human CLC-2 voltage-gated chloride channel reveal a ball-and-chain gating mechanism.
PubMed ID: 38345841
DOI: 10.7554/elife.90648
PubMed ID: 17762171
Title: Alterations in the cytoplasmic domain of CLCN2 result in altered gating kinetics.
PubMed ID: 17762171
DOI: 10.1159/000107528
PubMed ID: 19200853
Title: Clinical and genetic familial study of a large cohort of Italian children with idiopathic epilepsy.
PubMed ID: 19200853
PubMed ID: 19710712
Title: CLCN2 variants in idiopathic generalized epilepsy.
PubMed ID: 19710712
DOI: 10.1038/ng0909-954
PubMed ID: 19191339
Title: Two novel CLCN2 mutations accelerating chloride channel deactivation are associated with idiopathic generalized epilepsy.
PubMed ID: 19191339
DOI: 10.1002/humu.20876
PubMed ID: 23707145
Title: Brain white matter oedema due to ClC-2 chloride channel deficiency: an observational analytical study.
PubMed ID: 23707145
PubMed ID: 36964785
Title: Biallelic CLCN2 mutations cause retinal degeneration by impairing retinal pigment epithelium phagocytosis and chloride channel function.
PubMed ID: 36964785
Sequence Information:
- Length: 898
- Mass: 98535
- Checksum: 5F20FA8713C0C74E
- Sequence:
MAAAAAEEGM EPRALQYEQT LMYGRYTQDL GAFAKEEAAR IRLGGPEPWK GPPSSRAAPE LLEYGRSRCA RCRVCSVRCH KFLVSRVGED WIFLVLLGLL MALVSWVMDY AIAACLQAQQ WMSRGLNTSI LLQYLAWVTY PVVLITFSAG FTQILAPQAV GSGIPEMKTI LRGVVLKEYL TLKTFIAKVI GLTCALGSGM PLGKEGPFVH IASMCAALLS KFLSLFGGIY ENESRNTEML AAACAVGVGC CFAAPIGGVL FSIEVTSTFF AVRNYWRGFF AATFSAFIFR VLAVWNRDEE TITALFKTRF RLDFPFDLQE LPAFAVIGIA SGFGGALFVY LNRKIVQVMR KQKTINRFLM RKRLLFPALV TLLISTLTFP PGFGQFMAGQ LSQKETLVTL FDNRTWVRQG LVEELEPPST SQAWNPPRAN VFLTLVIFIL MKFWMSALAT TIPVPCGAFM PVFVIGAAFG RLVGESMAAW FPDGIHTDSS TYRIVPGGYA VVGAAALAGA VTHTVSTAVI VFELTGQIAH ILPVMIAVIL ANAVAQSLQP SLYDSIIRIK KLPYLPELGW GRHQQYRVRV EDIMVRDVPH VALSCTFRDL RLALHRTKGR MLALVESPES MILLGSIERS QVVALLGAQL SPARRRQHMQ ERRATQTSPL SDQEGPPTPE ASVCFQVNTE DSAFPAARGE THKPLKPALK RGPSVTRNLG ESPTGSAESA GIALRSLFCG SPPPEAASEK LESCEKRKLK RVRISLASDA DLEGEMSPEE ILEWEEQQLD EPVNFSDCKI DPAPFQLVER TSLHKTHTIF SLLGVDHAYV TSIGRLIGIV TLKELRKAIE GSVTAQGVKV RPPLASFRDS ATSSSDTETT EVHALWGPHS RHGLPREGSP SDSDDKCQ
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.