Details for: CLTB

Gene ID: 1212

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: CLTB

Ensembl ID: ENSG00000175416

Description: clathrin light chain B

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • keratinocyte CL0000312
    CSI 78.23
    rCSI 65.58%
    PRS 15.88
  • M cell of gut CL0000682
    CSI 65.15
    rCSI 69.22%
    PRS 23.47
  • OFF-bipolar cell CL0000750
    CSI 58.55
    rCSI 80.06%
    PRS 21.54
  • enterocyte CL0000584
    CSI 42.74
    rCSI 68.91%
    PRS 21.17
  • colonocyte CL1000347
    CSI 42.42
    rCSI 60.8%
    PRS 18.23
  • extravillous trophoblast CL0008036
    CSI 42.41
    rCSI 52.46%
    PRS 11.65
  • stem cell CL0000034
    CSI 42.31
    rCSI 40.79%
    PRS 9.2
  • foveolar cell of stomach CL0002179
    CSI 36.78
    rCSI 78.3%
    PRS 21.37
  • BEST4+ enteroycte CL4030026
    CSI 36.03
    rCSI 44.82%
    PRS 14.02
  • transit amplifying cell of colon CL0009011
    CSI 35.32
    rCSI 41.49%
    PRS 15.59
  • peripheral nervous system neuron CL2000032
    CSI 34.97
    rCSI 47.65%
    PRS 11.84
  • respiratory hillock cell CL4030023
    CSI 32.14
    rCSI 57.32%
    PRS 22.45
  • colon epithelial cell CL0011108
    CSI 29.69
    rCSI 31.1%
    PRS 12.37
  • pancreatic A cell CL0000171
    CSI 29.56
    rCSI 30.97%
    PRS 14.19
  • retina horizontal cell CL0000745
    CSI 28.65
    rCSI 43.67%
    PRS 12.42
  • secretory cell CL0000151
    CSI 28.33
    rCSI 29.56%
    PRS 13.59
  • tracheal goblet cell CL1000329
    CSI 24.61
    rCSI 53.73%
    PRS 26.63
  • intestine goblet cell CL0019031
    CSI 24.16
    rCSI 21.44%
    PRS 13.28
  • respiratory suprabasal cell CL4033048
    CSI 24.06
    rCSI 30.86%
    PRS 15.33
  • ON-bipolar cell CL0000749
    CSI 23.39
    rCSI 34.77%
    PRS 16.18
  • placental villous trophoblast CL2000060
    CSI 23.3
    rCSI 36.01%
    PRS 12.43
  • intestinal epithelial cell CL0002563
    CSI 22.58
    rCSI 23.6%
    PRS 13.95
  • pancreatic acinar cell CL0002064
    CSI 22.37
    rCSI 29.74%
    PRS 14.51
  • pancreatic D cell CL0000173
    CSI 21.9
    rCSI 21.54%
    PRS 14.44
  • squamous epithelial cell CL0000076
    CSI 20.95
    rCSI 49.73%
    PRS 16.79
  • transit amplifying cell CL0009010
    CSI 20.86
    rCSI 31.91%
    PRS 21.55
  • colon goblet cell CL0009039
    CSI 18.96
    rCSI 45.06%
    PRS 19.93
  • microcirculation associated smooth muscle cell CL0008035
    CSI 18.44
    rCSI 53.37%
    PRS 15.06
  • fallopian tube secretory epithelial cell CL4030006
    CSI 16.53
    rCSI 15.91%
    PRS 13.75
  • syncytiotrophoblast cell CL0000525
    CSI 16.42
    rCSI 47.3%
    PRS 25.67
  • mammary gland epithelial cell CL0002327
    CSI 15.71
    rCSI 55.11%
    PRS 23.95
  • conjunctival epithelial cell CL1000432
    CSI 15.07
    rCSI 23.02%
    PRS 13.28
  • goblet cell CL0000160
    CSI 13.92
    rCSI 13.15%
    PRS 13.86
  • nasal mucosa goblet cell CL0002480
    CSI 13.28
    rCSI 15.4%
    PRS 19.6
  • muscle cell CL0000187
    CSI 13.22
    rCSI 27.15%
    PRS 30.57
  • epithelial cell CL0000066
    CSI 13
    rCSI 19.98%
    PRS 18.84
  • basal cell of prostate epithelium CL0002341
    CSI 11.87
    rCSI 34.36%
    PRS 29.48
  • mucous neck cell CL0000651
    CSI 11.78
    rCSI 16.97%
    PRS 21.32
  • perivascular cell CL4033054
    CSI 11.69
    rCSI 15.98%
    PRS 15.09
  • enterocyte of epithelium of large intestine CL0002071
    CSI 11.65
    rCSI 61.19%
    PRS 23.49
  • stromal cell of ovary CL0002132
    CSI 11.49
    rCSI 31.58%
    PRS 21.85
  • GABAergic amacrine cell CL4030027
    CSI 11.06
    rCSI 37.89%
    PRS 11.73
  • type B pancreatic cell CL0000169
    CSI 11.01
    rCSI 24.37%
    PRS 12.35
  • amacrine cell CL0000561
    CSI 10.94
    rCSI 31.7%
    PRS 10.33
  • retinal cone cell CL0000573
    CSI 10.06
    rCSI 16.2%
    PRS 10.22
  • retinal ganglion cell CL0000740
    CSI 9.29
    rCSI 20.52%
    PRS 9.56
  • cardiac muscle cell CL0000746
    CSI 8.48
    rCSI 12.17%
    PRS 10.32
  • pancreatic ductal cell CL0002079
    CSI 8.45
    rCSI 16.44%
    PRS 13.55
  • regular atrial cardiac myocyte CL0002129
    CSI 8.42
    rCSI 27.11%
    PRS 14.08
  • CD4-positive, CD25-positive, alpha-beta regulatory T cell CL0000792
    CSI 8.31
    rCSI 8.16%
    PRS 20.87
  • pancreatic stellate cell CL0002410
    CSI 8.23
    rCSI 47.91%
    PRS 19.92
  • bronchus fibroblast of lung CL2000093
    CSI 8.12
    rCSI 6.6%
    PRS 14.01
  • ionocyte CL0005006
    CSI 7.58
    rCSI 8.13%
    PRS 12.22
  • paneth cell of colon CL0009009
    CSI 7.56
    rCSI 74.26%
    PRS 37.24
  • melanocyte CL0000148
    CSI 7.55
    rCSI 5.59%
    PRS 11.75
  • promyelocyte CL0000836
    CSI 7.19
    rCSI 10.37%
    PRS 18.46
  • bronchial goblet cell CL1000312
    CSI 7.09
    rCSI 28.32%
    PRS 28.96
  • intestinal crypt stem cell of small intestine CL0009017
    CSI 7.06
    rCSI 19.04%
    PRS 17.1
  • skin fibroblast CL0002620
    CSI 7.05
    rCSI 6.08%
    PRS 21.37
  • enteroendocrine cell of colon CL0009042
    CSI 6.72
    rCSI 31.53%
    PRS 35.22
  • basal-myoepithelial cell of mammary gland CL0002324
    CSI 6.48
    rCSI 12.26%
    PRS 28.67
  • kidney loop of Henle thin descending limb epithelial cell CL1001111
    CSI 6.27
    rCSI 8.89%
    PRS 12.37
  • CD14-low, CD16-positive monocyte CL0002396
    CSI 6.2
    rCSI 4.78%
    PRS 12.04
  • epithelial cell of esophagus CL0002252
    CSI 6.16
    rCSI 60.88%
    PRS 45.84
  • Mueller cell CL0000636
    CSI 6.16
    rCSI 14.05%
    PRS 11.63
  • effector CD8-positive, alpha-beta T cell CL0001050
    CSI 6.1
    rCSI 4.64%
    PRS 17.37
  • CD4-positive, alpha-beta cytotoxic T cell CL0000934
    CSI 6.05
    rCSI 8.31%
    PRS 27.36
  • tracheobronchial serous cell CL0019001
    CSI 5.92
    rCSI 25.57%
    PRS 25.32
  • myofibroblast cell CL0000186
    CSI 5.81
    rCSI 8.05%
    PRS 19.06
  • intestinal crypt stem cell of colon CL0009043
    CSI 5.81
    rCSI 43.63%
    PRS 24.3
  • plasmablast CL0000980
    CSI 5.8
    rCSI 4.56%
    PRS 15.78
  • ciliated cell CL0000064
    CSI 5.62
    rCSI 9.11%
    PRS 13.51
  • epithelial cell of lung CL0000082
    CSI 5.6
    rCSI 4.64%
    PRS 12.51
  • club cell CL0000158
    CSI 5.5
    rCSI 8.05%
    PRS 15.48
  • enteroendocrine cell CL0000164
    CSI 5.49
    rCSI 7.5%
    PRS 14.72
  • respiratory goblet cell CL0002370
    CSI 5.3
    rCSI 57.62%
    PRS 25.5
  • activated type II NK T cell CL0000931
    CSI 5.27
    rCSI 5.93%
    PRS 21.28
  • CD16-negative, CD56-bright natural killer cell, human CL0000938
    CSI 5.25
    rCSI 3.93%
    PRS 37.8
  • endothelial cell of lymphatic vessel CL0002138
    CSI 5.15
    rCSI 10.22%
    PRS 39.02
  • effector memory CD4-positive, alpha-beta T cell CL0000905
    CSI 5.11
    rCSI 6.96%
    PRS 31.78
  • CD4-positive, alpha-beta memory T cell CL0000897
    CSI 5.06
    rCSI 3.63%
    PRS 18.05
  • erythrocyte CL0000232
    CSI 5.06
    rCSI 11.48%
    PRS 18.46
  • basal cell CL0000646
    CSI 4.97
    rCSI 6.65%
    PRS 14.52
  • neural progenitor cell CL0011020
    CSI 4.9
    rCSI 21.56%
    PRS 12.9
  • CD4-positive, alpha-beta thymocyte CL0000810
    CSI 4.87
    rCSI 3.9%
    PRS 24.04
  • activated CD8-positive, alpha-beta T cell CL0000906
    CSI 4.86
    rCSI 4.77%
    PRS 37.52
  • corneal epithelial cell CL0000575
    CSI 4.8
    rCSI 13.73%
    PRS 23.56
  • activated CD4-positive, alpha-beta T cell CL0000896
    CSI 4.76
    rCSI 4.4%
    PRS 24.13
  • deuterosomal cell CL4033044
    CSI 4.72
    rCSI 15.95%
    PRS 22.22
  • acinar cell CL0000622
    CSI 4.6
    rCSI 6.75%
    PRS 17.42
  • T follicular helper cell CL0002038
    CSI 4.56
    rCSI 3.41%
    PRS 21.5
  • mature T cell CL0002419
    CSI 4.52
    rCSI 3.51%
    PRS 19.12
  • luminal epithelial cell of mammary gland CL0002326
    CSI 4.5
    rCSI 8.18%
    PRS 20.31
  • CD16-positive, CD56-dim natural killer cell, human CL0000939
    CSI 4.49
    rCSI 2.99%
    PRS 34.46
  • cerebral cortex GABAergic interneuron CL0010011
    CSI 4.47
    rCSI 13.19%
    PRS 16.23
  • hematopoietic stem cell CL0000037
    CSI 4.47
    rCSI 2.97%
    PRS 15.82
  • vein endothelial cell CL0002543
    CSI 4.43
    rCSI 12.09%
    PRS 50.27
  • conventional dendritic cell CL0000990
    CSI 4.39
    rCSI 3.67%
    PRS 38
  • plasmacytoid dendritic cell, human CL0001058
    CSI 4.38
    rCSI 3.06%
    PRS 13.91
  • blood vessel endothelial cell CL0000071
    CSI 4.33
    rCSI 8.98%
    PRS 13.26
  • CD14-positive, CD16-positive monocyte CL0002397
    CSI -9.7
    rCSI -12.8%
    PRS 18.6%
  • lung neuroendocrine cell CL1000223
    CSI -4.1
    rCSI -6.0%
    PRS 15.3%
  • effector memory CD8-positive, alpha-beta T cell CL0000913
    CSI -4.0
    rCSI -3.7%
    PRS 20.1%
  • effector CD4-positive, alpha-beta T cell CL0001044
    CSI -3.5
    rCSI -10.0%
    PRS 19.3%
  • regular ventricular cardiac myocyte CL0002131
    CSI -1.3
    rCSI -8.3%
    PRS 10.3%
  • mononuclear phagocyte CL0000113
    CSI -0.4
    rCSI -1.0%
    PRS 14.7%
  • mesenchymal stem cell CL0000134
    CSI 0.0
    rCSI 0.1%
    PRS 24.0%
  • peptic cell CL0000155
    CSI 0.1
    rCSI 1.0%
    PRS 38.5%
  • L4 intratelencephalic projecting glutamatergic neuron CL4030063
    CSI 0.1
    rCSI 0.3%
    PRS 7.4%
  • prostate gland microvascular endothelial cell CL2000059
    CSI 0.2
    rCSI 4.8%
    PRS 44.0%
  • alveolar macrophage CL0000583
    CSI 0.2
    rCSI 0.4%
    PRS 15.4%
  • renal interstitial pericyte CL1001318
    CSI 0.2
    rCSI 0.6%
    PRS 12.4%
  • enteric neuron CL0007011
    CSI 0.3
    rCSI 4.0%
    PRS 33.1%
  • acinar cell of salivary gland CL0002623
    CSI 0.3
    rCSI 6.6%
    PRS 23.9%
  • ON parasol ganglion cell CL4033052
    CSI 0.3
    rCSI 4.3%
    PRS 9.4%
  • cytotoxic T cell CL0000910
    CSI 0.3
    rCSI 1.8%
    PRS 19.4%
  • hepatic stellate cell CL0000632
    CSI 0.3
    rCSI 1.2%
    PRS 11.2%
  • parietal cell CL0000162
    CSI 0.3
    rCSI 2.9%
    PRS 61.8%
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 0.3
    rCSI 0.6%
    PRS 7.8%
  • blood vessel smooth muscle cell CL0019018
    CSI 0.4
    rCSI 3.0%
    PRS 13.7%
  • primitive red blood cell CL0002355
    CSI 0.4
    rCSI 2.2%
    PRS 24.8%
  • H1 horizontal cell CL0004217
    CSI 0.4
    rCSI 1.6%
    PRS 18.6%
  • OFF midget ganglion cell CL4033047
    CSI 0.4
    rCSI 9.0%
    PRS 11.2%
  • flat midget bipolar cell CL4033033
    CSI 0.5
    rCSI 3.2%
    PRS 12.6%
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 0.5
    rCSI 2.6%
    PRS 8.2%
  • group 2 innate lymphoid cell CL0001069
    CSI 0.5
    rCSI 2.4%
    PRS 44.1%
  • CD14-positive, CD16-negative classical monocyte CL0002057
    CSI 0.5
    rCSI 2.8%
    PRS 29.5%
  • IgG plasma cell CL0000985
    CSI 0.5
    rCSI 0.6%
    PRS 22.8%
  • ON midget ganglion cell CL4033046
    CSI 0.5
    rCSI 9.9%
    PRS 10.2%
  • effector memory CD8-positive, alpha-beta T cell, terminally differentiated CL0001062
    CSI 0.5
    rCSI 2.5%
    PRS 17.3%
  • large pre-B-II cell CL0000957
    CSI 0.6
    rCSI 1.6%
    PRS 22.9%
  • centrilobular region hepatocyte CL0019029
    CSI 0.6
    rCSI 1.5%
    PRS 21.0%
  • brush cell CL0002204
    CSI 0.6
    rCSI 1.2%
    PRS 34.2%
  • CD8-positive, CD28-negative, alpha-beta regulatory T cell CL0000920
    CSI 0.6
    rCSI 1.2%
    PRS 22.0%
  • myoepithelial cell CL0000185
    CSI 0.6
    rCSI 1.6%
    PRS 16.5%
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 0.7
    rCSI 0.6%
    PRS 11.8%
  • type EC enteroendocrine cell CL0000577
    CSI 0.7
    rCSI 2.4%
    PRS 21.7%
  • kidney connecting tubule epithelial cell CL1000768
    CSI 0.7
    rCSI 1.8%
    PRS 10.1%
  • dendritic cell, human CL0001056
    CSI 0.7
    rCSI 1.1%
    PRS 15.5%
  • H2 horizontal cell CL0004218
    CSI 0.7
    rCSI 3.5%
    PRS 14.4%
  • slow muscle cell CL0000189
    CSI 0.7
    rCSI 9.7%
    PRS 57.9%
  • endothelial cell of placenta CL0009092
    CSI 0.8
    rCSI 3.8%
    PRS 18.0%
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 0.8
    rCSI 2.8%
    PRS 7.2%
  • kidney loop of Henle thin ascending limb epithelial cell CL1001107
    CSI 0.8
    rCSI 2.1%
    PRS 12.4%
  • L6b glutamatergic cortical neuron CL4023038
    CSI 0.8
    rCSI 2.5%
    PRS 8.3%
  • mature alpha-beta T cell CL0000791
    CSI 0.9
    rCSI 3.1%
    PRS 22.8%
  • keratocyte CL0002363
    CSI 0.9
    rCSI 2.1%
    PRS 19.9%
  • chondrocyte CL0000138
    CSI 0.9
    rCSI 1.4%
    PRS 11.4%
  • helper T cell CL0000912
    CSI 0.9
    rCSI 1.3%
    PRS 18.5%
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 0.9
    rCSI 1.5%
    PRS 7.8%
  • fast muscle cell CL0000190
    CSI 0.9
    rCSI 3.7%
    PRS 30.9%
  • mesodermal cell CL0000222
    CSI 1.0
    rCSI 1.2%
    PRS 13.1%
  • near-projecting glutamatergic cortical neuron CL4023012
    CSI 1.0
    rCSI 3.8%
    PRS 7.9%
  • intestinal tuft cell CL0019032
    CSI 1.0
    rCSI 1.6%
    PRS 15.2%
  • Cajal-Retzius cell CL0000695
    CSI 1.0
    rCSI 8.0%
    PRS 28.5%
  • endothelial cell of uterus CL0009095
    CSI 1.0
    rCSI 7.6%
    PRS 35.9%
  • luminal cell of prostate epithelium CL0002340
    CSI 1.1
    rCSI 5.7%
    PRS 23.9%
  • intermediate monocyte CL0002393
    CSI 1.1
    rCSI 1.6%
    PRS 13.1%
  • rod bipolar cell CL0000751
    CSI 1.1
    rCSI 1.9%
    PRS 11.1%
  • vasa recta descending limb cell CL1001285
    CSI 1.1
    rCSI 8.6%
    PRS 51.2%
  • mature B cell CL0000785
    CSI 1.1
    rCSI 0.9%
    PRS 16.4%
  • astrocyte of the cerebral cortex CL0002605
    CSI 1.1
    rCSI 2.5%
    PRS 8.2%
  • CD8-positive, alpha-beta cytotoxic T cell CL0000794
    CSI 1.1
    rCSI 1.3%
    PRS 23.0%
  • common lymphoid progenitor CL0000051
    CSI 1.1
    rCSI 1.5%
    PRS 25.3%
  • VIP GABAergic cortical interneuron CL4023016
    CSI 1.1
    rCSI 1.4%
    PRS 7.6%
  • class switched memory B cell CL0000972
    CSI 1.2
    rCSI 0.9%
    PRS 22.3%
  • common myeloid progenitor CL0000049
    CSI 1.2
    rCSI 0.9%
    PRS 13.1%
  • periportal region hepatocyte CL0019026
    CSI 1.2
    rCSI 4.5%
    PRS 18.5%
  • P/D1 enteroendocrine cell CL0002268
    CSI 1.2
    rCSI 6.4%
    PRS 32.7%
  • glandular epithelial cell CL0000150
    CSI 1.2
    rCSI 3.1%
    PRS 25.9%
  • type L enteroendocrine cell CL0002279
    CSI 1.2
    rCSI 2.2%
    PRS 26.2%
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 1.2
    rCSI 2.9%
    PRS 7.6%
  • germinal center B cell CL0000844
    CSI 1.2
    rCSI 3.6%
    PRS 32.6%
  • pancreatic epsilon cell CL0005019
    CSI 1.2
    rCSI 5.7%
    PRS 31.5%
  • pvalb GABAergic cortical interneuron CL4023018
    CSI 1.3
    rCSI 1.6%
    PRS 7.3%
  • sncg GABAergic cortical interneuron CL4023015
    CSI 1.4
    rCSI 2.2%
    PRS 8.5%
  • mesenchymal cell CL0008019
    CSI 1.4
    rCSI 3.5%
    PRS 13.5%
  • lung goblet cell CL1000143
    CSI 1.4
    rCSI 15.6%
    PRS 42.4%
  • ciliated columnar cell of tracheobronchial tree CL0002145
    CSI 1.4
    rCSI 3.3%
    PRS 13.9%
  • pulmonary alveolar type 1 cell CL0002062
    CSI 1.5
    rCSI 8.5%
    PRS 17.5%
  • tracheobronchial smooth muscle cell CL0019019
    CSI 1.5
    rCSI 2.6%
    PRS 17.6%
  • T-helper 17 cell CL0000899
    CSI 1.6
    rCSI 1.3%
    PRS 23.5%
  • alternatively activated macrophage CL0000890
    CSI 1.7
    rCSI 2.1%
    PRS 20.3%
  • pancreatic PP cell CL0002275
    CSI 1.7
    rCSI 6.8%
    PRS 23.4%
  • fibroblast of breast CL4006000
    CSI 1.7
    rCSI 7.2%
    PRS 33.8%
  • basal cell of epidermis CL0002187
    CSI 1.7
    rCSI 3.0%
    PRS 12.7%
  • choroid plexus epithelial cell CL0000706
    CSI 1.8
    rCSI 2.9%
    PRS 10.3%
  • granulocyte monocyte progenitor cell CL0000557
    CSI 1.8
    rCSI 1.6%
    PRS 14.8%
  • radial glial cell CL0000681
    CSI 1.8
    rCSI 2.5%
    PRS 13.7%
  • lung microvascular endothelial cell CL2000016
    CSI 1.8
    rCSI 34.8%
    PRS 40.9%
  • tuft cell of colon CL0009041
    CSI 1.8
    rCSI 4.3%
    PRS 27.8%
  • group 3 innate lymphoid cell CL0001071
    CSI 1.9
    rCSI 1.4%
    PRS 13.8%
  • paneth cell of epithelium of small intestine CL1000343
    CSI 1.9
    rCSI 5.2%
    PRS 20.5%
  • lung endothelial cell CL1001567
    CSI 1.9
    rCSI 4.3%
    PRS 31.4%
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 1.9
    rCSI 5.8%
    PRS 8.9%
  • enteroendocrine cell of small intestine CL0009006
    CSI 1.9
    rCSI 4.1%
    PRS 20.4%
  • respiratory epithelial cell CL0002368
    CSI 1.9
    rCSI 11.6%
    PRS 42.4%
  • interneuron CL0000099
    CSI 1.9
    rCSI 3.8%
    PRS 9.8%
  • pulmonary ionocyte CL0017000
    CSI 1.9
    rCSI 2.3%
    PRS 16.7%
  • stromal cell CL0000499
    CSI 1.9
    rCSI 5.3%
    PRS 18.9%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [CLTB](/details-gene/1212), or clathrin light chain B, encodes a crucial structural protein that forms part of the clathrin-coated vesicles essential for intracellular transport. It functions primarily in [clathrin-dependent endocytosis](/details-pathway/GO:0072583), a fundamental process for internalizing molecules from the cell surface. The gene exhibits particularly high significance in cells with high rates of membrane turnover and transport activity, such as epithelial cells of the skin ([keratinocyte](/details-cell/CL0000312)) and gut ([M cell of gut](/details-cell/CL0000682), [enterocyte](/details-cell/CL0000584)), as well as specialized neuronal cells of the retina, underscoring its vital role in maintaining tissue homeostasis, nutrient absorption, and neural signaling. ## Cellular Roles and Expression Landscape **Overall**, the expression profile of [CLTB](/details-gene/1212) highlights its role as a fundamental workhorse in membrane trafficking, with pronounced importance in specific cellular contexts. Its highest significance is observed in a variety of epithelial cell types that form barrier tissues, including [keratinocyte](/details-cell/CL0000312), [M cell of gut](/details-cell/CL0000682), [enterocyte](/details-cell/CL0000584), [colonocyte](/details-cell/CL1000347), and [foveolar cell of stomach](/details-cell/CL0002179). This pattern suggests a critical function in processes such as nutrient uptake, antigen sampling, and the maintenance of epithelial integrity. Beyond epithelial tissues, [CLTB](/details-gene/1212) is also highly significant in progenitor cells like [stem cell](/details-cell/CL0000034) and [transit amplifying cell of colon](/details-cell/CL0009011), which is consistent with the role of endocytosis in regulating developmental signaling pathways. Furthermore, its prominent expression in neuronal subtypes, such as [OFF-bipolar cell](/details-cell/CL0000750), [retina horizontal cell](/details-cell/CL0000745), and [peripheral nervous system neuron](/details-cell/CL2000032), points towards a specialized function in synaptic vesicle recycling and neurotransmitter receptor regulation. Conversely, the relatively low significance of [CLTB](/details-gene/1212) in certain immune cells, including [CD14-positive, CD16-positive monocyte](/details-cell/CL0002397) and [effector memory CD8-positive, alpha-beta T cell](/details-cell/CL0000913), as well as in [regular ventricular cardiac myocyte](/details-cell/CL0002131), suggests that while clathrin-mediated endocytosis is universal, the reliance on the CLTB isoform may be less pronounced or potentially redundant in these specific lineages compared to epithelial and neuronal cells. ## Pathways and Molecular Function The molecular function of [CLTB](/details-gene/1212) is intrinsically linked to its role as a structural component of the [clathrin coat](/details-pathway/GO:0030118) of vesicles. It performs its function by binding to the clathrin heavy chain ([GO:0032050](/details-pathway/GO:0032050)), which facilitates the assembly of the characteristic triskelion structure of clathrin cages ([Link](https://pubmed.ncbi.nlm.nih.gov/11889126/), [Link](https://pubmed.ncbi.nlm.nih.gov/15533940/)). This assembly is the central event in [Clathrin-mediated endocytosis](/details-pathway/R-HSA-8856828), a pathway responsible for the regulated uptake of proteins and lipids from the plasma membrane. Functionally, [CLTB](/details-gene/1212) is implicated in a wide array of biological processes that depend on endocytosis. Its role in [synaptic vesicle endocytosis](/details-pathway/GO:0048488) is consistent with its high expression in neurons and its involvement in Reactome pathways such as [Nervous system development](/details-pathway/R-HSA-9675108) and [Axon guidance](/details-pathway/R-HSA-422475). Additionally, [CLTB](/details-gene/1212) is a key player in the trafficking of signaling receptors, as evidenced by its participation in pathways like [Signaling by wnt](/details-pathway/R-HSA-195721) and [Eph-ephrin signaling](/details-pathway/R-HSA-2682334). These pathways are crucial for cell fate decisions and tissue patterning, aligning with its expression in stem and progenitor cells. Its function extends to the biogenesis of other organelles, including lysosomes ([Lysosome vesicle biogenesis](/details-pathway/R-HSA-432720)) and the regulation of intercellular communication through gap junctions ([Gap junction trafficking](/details-pathway/R-HSA-190828)). ## Research Directions Based on its fundamental role in endocytosis and its distinct expression pattern, several research avenues can be proposed to further elucidate the specific functions of [CLTB](/details-gene/1212). **Proposed Hypotheses:** 1. Given its exceptionally high significance in gut epithelial cells ([enterocyte](/details-cell/CL0000584), [colonocyte](/details-cell/CL1000347)), [CLTB](/details-gene/1212) may play a non-redundant role in regulating intestinal barrier integrity by controlling the endocytic turnover of tight junction and adherens junction proteins. Its dysregulation could therefore be a contributing factor to inflammatory bowel diseases. 2. The high expression of [CLTB](/details-gene/1212) in specific retinal neurons, such as the [OFF-bipolar cell](/details-cell/CL0000750), suggests it may be required for the high-fidelity recycling of synaptic vesicles associated with specific neurotransmitter systems (e.g., glutamate), and its loss could lead to defects in visual signal processing. **Experimental Approach:** To test the hypothesis that [CLTB](/details-gene/1212) is critical for intestinal epithelial barrier function, a conditional knockout mouse model could be generated using a Villin-Cre driver to specifically delete [CLTB](/details-gene/1212) in the intestinal epithelium. Barrier integrity could then be assessed *in vivo* through oral administration of FITC-dextran and measuring its leakage into the serum. Intestinal organoids derived from these mice would allow for precise *in vitro* measurement of transepithelial electrical resistance (TEER) and detailed analysis of the localization and turnover rates of key junctional proteins (e.g., E-cadherin, occludin) using immunofluorescence and biochemical assays. **Therapeutic Potential:** As an essential housekeeping gene, direct systemic inhibition of [CLTB](/details-gene/1212) would likely result in significant toxicity. Therefore, it is not a promising direct therapeutic target. However, its fundamental role in endocytosis could be exploited indirectly. For pathogens or toxins that rely on clathrin-mediated entry into epithelial cells, strategies aimed at modulating this specific uptake process, rather than inhibiting CLTB itself, could represent a viable therapeutic avenue. Furthermore, understanding how [CLTB](/details-gene/1212) regulates the surface expression of disease-relevant receptors could inform the development of therapies that alter receptor trafficking.

Genular Protein ID: 3200289978

Symbol: CLCB_HUMAN

Name: Clathrin light chain B

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 3267234

Title: Structure of human clathrin light chains. Conservation of light chain polymorphism in three mammalian species.

PubMed ID: 3267234

DOI: 10.1016/s0021-9258(18)37445-3

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 11889126

Title: HIP1 and HIP12 display differential binding to F-actin, AP2, and clathrin. Identification of a novel interaction with clathrin light chain.

PubMed ID: 11889126

DOI: 10.1074/jbc.m112310200

PubMed ID: 15533940

Title: Huntingtin-interacting protein 1 (Hip1) and Hip1-related protein (Hip1R) bind the conserved sequence of clathrin light chains and thereby influence clathrin assembly in vitro and actin distribution in vivo.

PubMed ID: 15533940

DOI: 10.1074/jbc.m408454200

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

Sequence Information:

  • Length: 229
  • Mass: 25190
  • Checksum: 07DBA19D44648F6F
  • Sequence:
  • MADDFGFFSS SESGAPEAAE EDPAAAFLAQ QESEIAGIEN DEGFGAPAGS HAAPAQPGPT 
    SGAGSEDMGT TVNGDVFQEA NGPADGYAAI AQADRLTQEP ESIRKWREEQ RKRLQELDAA 
    SKVTEQEWRE KAKKDLEEWN QRQSEQVEKN KINNRIADKA FYQQPDADII GYVASEEAFV 
    KESKEETPGT EWEKVAQLCD FNPKSSKQCK DVSRLRSVLM SLKQTPLSR