Genular: Defining Cellular Identity and Function

Details for: Col3a1

Gene ID: 12825

Symbol: Col3a1

Ensembl ID: ENSMUSG00000026043

Description: collagen, type III, alpha 1

Associated with

Adaptive immune system
(R-MMU-1280218)
Assembly of collagen fibrils and other multimeric structures
(R-MMU-2022090)
Axon guidance
(R-MMU-422475)
Collagen biosynthesis and modifying enzymes
(R-MMU-1650814)
Collagen chain trimerization
(R-MMU-8948216)
Collagen degradation
(R-MMU-1442490)
Collagen formation
(R-MMU-1474290)
Degradation of the extracellular matrix
(R-MMU-1474228)
Developmental biology
(R-MMU-1266738)
Ecm proteoglycans
(R-MMU-3000178)
Immune system
(R-MMU-168256)
Immunoregulatory interactions between a lymphoid and a non-lymphoid cell
(R-MMU-198933)
Integrin cell surface interactions
(R-MMU-216083)
Met activates ptk2 signaling
(R-MMU-8874081)
Met promotes cell motility
(R-MMU-8875878)
Ncam1 interactions
(R-MMU-419037)
Ncam signaling for neurite out-growth
(R-MMU-375165)
Nervous system development
(R-MMU-9675108)
Non-integrin membrane-ecm interactions
(R-MMU-3000171)
Signaling by met
(R-MMU-6806834)
Signaling by pdgf
(R-MMU-186797)
Signaling by receptor tyrosine kinases
(R-MMU-9006934)
Signal transduction
(R-MMU-162582)
Aorta development
(GO:0035904)
Aorta smooth muscle tissue morphogenesis
(GO:0060414)
Basement membrane organization
(GO:0071711)
Blood vessel development
(GO:0001568)
Cartilage development
(GO:0051216)
Cell-matrix adhesion
(GO:0007160)
Cellular response to amino acid stimulus
(GO:0071230)
Cerebral cortex development
(GO:0021987)
Chondrocyte differentiation
(GO:0002062)
Collagen-containing extracellular matrix
(GO:0062023)
Collagen fibril organization
(GO:0030199)
Collagen trimer
(GO:0005581)
Collagen type iii trimer
(GO:0005586)
Digestive tract development
(GO:0048565)
Elastic fiber assembly
(GO:0048251)
Endochondral bone morphogenesis
(GO:0060350)
Extracellular matrix
(GO:0031012)
Extracellular matrix organization
(GO:0030198)
Extracellular matrix structural constituent
(GO:0005201)
Extracellular matrix structural constituent conferring tensile strength
(GO:0030020)
Extracellular region
(GO:0005576)
Extracellular space
(GO:0005615)
Fibroblast proliferation
(GO:0048144)
Gene expression
(GO:0010467)
Heart development
(GO:0007507)
Integrin-mediated signaling pathway
(GO:0007229)
Integrin binding
(GO:0005178)
In utero embryonic development
(GO:0001701)
Layer formation in cerebral cortex
(GO:0021819)
Limb joint morphogenesis
(GO:0036022)
Lung development
(GO:0030324)
Metal ion binding
(GO:0046872)
Multicellular organism growth
(GO:0035264)
Negative regulation of immune response
(GO:0050777)
Negative regulation of neuron migration
(GO:2001223)
Neuron migration
(GO:0001764)
Peptide cross-linking
(GO:0018149)
Platelet-derived growth factor binding
(GO:0048407)
Positive regulation of rho protein signal transduction
(GO:0035025)
Protease binding
(GO:0002020)
Response to angiotensin
(GO:1990776)
Response to cytokine
(GO:0034097)
Response to radiation
(GO:0009314)
Skin development
(GO:0043588)
Smad binding
(GO:0046332)
Supramolecular fiber organization
(GO:0097435)
Tissue homeostasis
(GO:0001894)
Transforming growth factor beta1 production
(GO:0032905)
Transforming growth factor beta receptor signaling pathway
(GO:0007179)
Wound healing
(GO:0042060)

Other Information

Proteins

Collagen alpha-1(III) chain

Genular Protein ID: 1134766671

Symbol: CO3A1_MOUSE

Name: Collagen alpha-1(III) chain

UniProtKB Accession Codes:

P08121 Q61429 Q9CRN7

Database IDs:

Citations:

PubMed ID: 7926795

Title: The mouse type-III procollagen-encoding gene: genomic cloning and complete DNA sequence.

PubMed ID: 7926795

DOI: 10.1016/0378-1119(94)90061-2

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 3443309

Title: Complete nucleotide sequence of the N-terminal domains of the murine alpha-1 type-III collagen chain.

PubMed ID: 3443309

DOI: 10.1016/0378-1119(87)90117-x

PubMed ID: 3972847

Title: Identification of the promoter and first exon of the mouse alpha 1 (III) collagen gene.

PubMed ID: 3972847

DOI: 10.1016/s0021-9258(19)83690-6

PubMed ID: 16141072

Title: The transcriptional landscape of the mammalian genome.

PubMed ID: 16141072

DOI: 10.1126/science.1112014

PubMed ID: 2054384

Title: Specific hybridization probes for mouse type I, II, III and IX collagen mRNAs.

PubMed ID: 2054384

DOI: 10.1016/0167-4781(91)90014-d

PubMed ID: 21183079

Title: A tissue-specific atlas of mouse protein phosphorylation and expression.

PubMed ID: 21183079

DOI: 10.1016/j.cell.2010.12.001

PubMed ID: 21768377

Title: G protein-coupled receptor 56 and collagen III, a receptor-ligand pair, regulates cortical development and lamination.

PubMed ID: 21768377

DOI: 10.1073/pnas.1104821108

Sequence Information:

Length: 1464
Mass: 138943
Checksum: 2104EC27A886090B
Sequence:

MMSFVQSGTW FLLTLLHPTL ILAQQSNVDE LGCSHLGQSY ESRDVWKPEP CQICVCDSGS 
VLCDDIICDE EPLDCPNPEI PFGECCAICP QPSTPAPVLP DGHGPQGPKG DPGPPGIPGR 
NGDPGLPGQP GLPGPPGSPG ICESCPTGGQ NYSPQFDSYD VKSGVGGMGG YPGPAGPPGP 
PGPPGSSGHP GSPGSPGYQG PPGEPGQAGP AGPPGPPGAL GPAGPAGKDG ESGRPGRPGE 
RGLPGPPGIK GPAGMPGFPG MKGHRGFDGR NGEKGETGAP GLKGENGLPG DNGAPGPMGP 
RGAPGERGRP GLPGAAGARG NDGARGSDGQ PGPPGPPGTA GFPGSPGAKG EVGPAGSPGS 
NGSPGQRGEP GPQGHAGAQG PPGPPGNNGS PGGKGEMGPA GIPGAPGLIG ARGPPGPAGT 
NGIPGTRGPS GEPGKNGAKG EPGARGERGE AGSPGIPGPK GEDGKDGSPG EPGANGLPGA 
AGERGPSGFR GPAGPNGIPG EKGPPGERGG PGPAGPRGVA GEPGRDGTPG GPGIRGMPGS 
PGGPGNDGKP GPPGSQGESG RPGPPGPSGP RGQPGVMGFP GPKGNDGAPG KNGERGGPGG 
PGLPGPAGKN GETGPQGPPG PTGPAGDKGD SGPPGPQGLQ GIPGTGGPPG ENGKPGEPGP 
KGEVGAPGAP GGKGDSGAPG ERGPPGTAGI PGARGGAGPP GPEGGKGPAG PPGPPGASGS 
PGLQGMPGER GGPGSPGPKG EKGEPGGAGA DGVPGKDGPR GPAGPIGPPG PAGQPGDKGE 
GGSPGLPGIA GPRGGPGERG EHGPPGPAGF PGAPGQNGEP GAKGERGAPG EKGEGGPPGP 
AGPTGSSGPA GPPGPQGVKG ERGSPGGPGT AGFPGGRGLP GPPGNNGNPG PPGPSGAPGK 
DGPPGPAGNS GSPGNPGIAG PKGDAGQPGE KGPPGAQGPP GSPGPLGIAG LTGARGLAGP 
PGMPGPRGSP GPQGIKGESG KPGASGHNGE RGPPGPQGLP GQPGTAGEPG RDGNPGSDGQ 
PGRDGSPGGK GDRGENGSPG APGAPGHPGP PGPVGPSGKS GDRGETGPAG PSGAPGPAGA 
RGAPGPQGPR GDKGETGERG SNGIKGHRGF PGNPGPPGSP GAAGHQGAIG SPGPAGPRGP 
VGPHGPPGKD GTSGHPGPIG PPGPRGNRGE RGSEGSPGHP GQPGPPGPPG APGPCCGGGA 
AAIAGVGGEK SGGFSPYYGD DPMDFKINTE EIMSSLKSVN GQIESLISPD GSRKNPARNC 
RDLKFCHPEL KSGEYWVDPN QGCKMDAIKV FCNMETGETC INASPMTVPR KHWWTDSGAE 
KKHVWFGESM NGGFQFSYGP PDLPEDVVDV QLAFLRLLSS RASQNITYHC KNSIAYMDQA 
SGNVKKSLKL MGSNEGEFKA EGNSKFTYTV LEDGCTKHTG EWSKTVFEYQ TRKAMRLPII 
DIAPYDIGGP DQEFGVDIGP VCFL

The gene details are incomplete or unavailable at the moment.

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.

Details for: Col3a1

Associated with

Other Information

The mouse type-III procollagen-encoding gene: genomic cloning and complete DNA sequence. PubMed ID: 7926795

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). PubMed ID: 15489334

Complete nucleotide sequence of the N-terminal domains of the murine alpha-1 type-III collagen chain. PubMed ID: 3443309

Identification of the promoter and first exon of the mouse alpha 1 (III) collagen gene. PubMed ID: 3972847

The transcriptional landscape of the mammalian genome. PubMed ID: 16141072

Specific hybridization probes for mouse type I, II, III and IX collagen mRNAs. PubMed ID: 2054384

A tissue-specific atlas of mouse protein phosphorylation and expression. PubMed ID: 21183079

G protein-coupled receptor 56 and collagen III, a receptor-ligand pair, regulates cortical development and lamination. PubMed ID: 21768377