Details for: Col8a1

Gene ID: 12837

Symbol: Col8a1

Ensembl ID: ENSMUSG00000068196

Description: collagen, type VIII, alpha 1

Associated with

Other Information

Genular Protein ID: 456533478

Symbol: CO8A1_MOUSE

Name: Collagen alpha-1(VIII) chain

UniProtKB Accession Codes:

Q00780 B8JJL9 Q3TWU7 Q8BGL6 Q921S8 Q9D2V4

Database IDs:

AGR 1 AlphaFoldDB 1 Antibodypedia 1 Bgee 1 BioGRID 1 BioGRID-ORCS 1 CCDS 1 CTD 1 ChiTaRS 1 ComplexPortal 2 DNASU 1 DisProt 1 EMBL 8 Ensembl 1 EvolutionaryTrace 1 GO 12 Gene3D 1 GeneTree 1 Genevisible 1 HOGENOM 1 InParanoid 1 InterPro 3 KEGG 1 MGI 1 MaxQB 1 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PDB 2 PDBsum 1 PIR 1 PRINTS 1 PRO 1 PROSITE 1 PROSITE-ProRule 1 PaxDb 1 PeptideAtlas 1 Pfam 2 PhosphoSitePlus 1 PhylomeDB 1 Proteomes 1 ProteomicsDB 1 Pumba 1 RNAct 1 Reactome 5 RefSeq 1 SAM 1 SMART 1 SMR 1 STRING 1 SUPFAM 1 TreeFam 1 UCSC 1 VEuPathDB 1 eggNOG 1 iPTMnet 1

Citations:

PubMed ID: 1499564

Title: Alpha 1(VIII)-collagen gene transcripts encode a short-chain collagen polypeptide and are expressed by various epithelial, endothelial and mesenchymal cells in newborn mouse tissues.

PubMed ID: 1499564

DOI: 10.1111/j.1432-1033.1992.tb17122.x

PubMed ID: 16141072

Title: The transcriptional landscape of the mammalian genome.

PubMed ID: 16141072

DOI: 10.1126/science.1112014

PubMed ID: 19468303

Title: Lineage-specific biology revealed by a finished genome assembly of the mouse.

PubMed ID: 19468303

DOI: 10.1371/journal.pbio.1000112

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 15063777

Title: Astrocytes express type VIII collagen during the repair process of brain cold injury.

PubMed ID: 15063777

DOI: 10.1016/j.bbrc.2004.03.049

PubMed ID: 16269661

Title: Migration and growth are attenuated in vascular smooth muscle cells with type VIII collagen-null alleles.

PubMed ID: 16269661

DOI: 10.1161/01.atv.0000194155.96456.b7

PubMed ID: 19401424

Title: Lack of type VIII collagen in mice ameliorates diabetic nephropathy.

PubMed ID: 19401424

DOI: 10.2337/db08-0183

PubMed ID: 12782141

Title: Crystal structure of the collagen alpha1(VIII) NC1 trimer.

PubMed ID: 12782141

DOI: 10.1016/s0945-053x(02)00119-1

Sequence Information:

  • Length: 744
  • Mass: 73607
  • Checksum: 88F31CD20BDC8372
  • Sequence:
    • MAVPPRPLQL LGILFIISLN SVRLIQAGAY YGIKPLPPQI PPQIPPQIPQ YQPLGQQVPH 
MPLGKDGLSM GKEMPHMQYG KEYPHLPQYM KEIPPVPRMG KEVVPKKGKG EVPLASLRGE 
QGPRGEPGPR GPPGPPGLPG HGMPGIKGKP GPQGYPGIGK PGMPGMPGKP GAMGMPGAKG 
EIGPKGEIGP MGIPGPQGPP GPHGLPGIGK PGGPGLPGQP GAKGERGPKG PPGPPGLQGP 
KGEKGFGMPG LPGLKGPPGM HGPPGPVGLP GVGKPGVTGF PGPQGPLGKP GPPGEPGPQG 
LIGVPGVQGP PGMPGVGKPG QDGIPGQPGF PGGKGEQGLP GLPGPPGLPG VGKPGFPGPK 
GDRGIGGVPG VLGPRGEKGP IGAPGMGGPP GEPGLPGIPG PMGPPGAIGF PGPKGEGGVV 
GPQGPPGPKG EPGLQGFPGK PGFLGEVGPP GMRGLPGPIG PKGEGGHKGL PGLPGVPGLL 
GPKGEPGIPG DQGLQGPPGI PGIVGPSGPI GPPGIPGPKG EPGLPGPPGF PGVGKPGVAG 
LHGPPGKPGA LGPQGQPGLP GPPGPPGPPG PPAVMPTPSP QGEYLPDMGL GIDGVKPPHA 
YAGKKGKHGG PAYEMPAFTA ELTVPFPPVG APVKFDKLLY NGRQNYNPQT GIFTCEVPGV 
YYFAYHVHCK GGNVWVALFK NNEPMMYTYD EYKKGFLDQA SGSAVLLLRP GDQVFLQMPS 
EQAAGLYAGQ YVHSSFSGYL LYPM

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.