Details for: COL6A1
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 279.2918
Cell Significance Index: -43.4400 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 172.0132
Cell Significance Index: -43.6300 - Cell Name: embryonic stem cell (CL0002322)
Fold Change: 102.3431
Cell Significance Index: -42.1600 - Cell Name: mucosal type mast cell (CL0000485)
Fold Change: 90.7553
Cell Significance Index: -36.8700 - Cell Name: smooth muscle fiber of ileum (CL1000278)
Fold Change: 88.3033
Cell Significance Index: -41.6900 - Cell Name: ciliated cell of the bronchus (CL0002332)
Fold Change: 38.6177
Cell Significance Index: -36.8700 - Cell Name: theca cell (CL0000503)
Fold Change: 15.7225
Cell Significance Index: 92.3700 - Cell Name: pulmonary interstitial fibroblast (CL0002241)
Fold Change: 12.4553
Cell Significance Index: 77.0600 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 10.8678
Cell Significance Index: -42.8900 - Cell Name: interstitial cell of ovary (CL0002094)
Fold Change: 9.9288
Cell Significance Index: 127.1600 - Cell Name: preadipocyte (CL0002334)
Fold Change: 6.6583
Cell Significance Index: 129.9500 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 5.8121
Cell Significance Index: 798.1700 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: 5.5118
Cell Significance Index: 158.0000 - Cell Name: skeletal muscle fibroblast (CL0011027)
Fold Change: 4.1576
Cell Significance Index: 28.1700 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: 3.7465
Cell Significance Index: 78.4200 - Cell Name: fibroblast of breast (CL4006000)
Fold Change: 3.3235
Cell Significance Index: 20.9000 - Cell Name: enteric smooth muscle cell (CL0002504)
Fold Change: 1.8923
Cell Significance Index: 9.9600 - Cell Name: fibroblast of cardiac tissue (CL0002548)
Fold Change: 1.8572
Cell Significance Index: 26.6700 - Cell Name: perivascular cell (CL4033054)
Fold Change: 1.7781
Cell Significance Index: 8.2100 - Cell Name: odontoblast (CL0000060)
Fold Change: 1.3159
Cell Significance Index: 168.6900 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: 1.0253
Cell Significance Index: 48.1900 - Cell Name: embryonic fibroblast (CL2000042)
Fold Change: 0.9971
Cell Significance Index: 4.7700 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: 0.8618
Cell Significance Index: 43.5500 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: 0.8132
Cell Significance Index: 28.2600 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 0.7355
Cell Significance Index: 147.5500 - Cell Name: cortical thymic epithelial cell (CL0002364)
Fold Change: 0.5103
Cell Significance Index: 4.2200 - Cell Name: granulosa cell (CL0000501)
Fold Change: 0.4081
Cell Significance Index: 10.7300 - Cell Name: columnar/cuboidal epithelial cell (CL0000075)
Fold Change: 0.4074
Cell Significance Index: 1.5600 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.3835
Cell Significance Index: 72.9900 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: 0.3406
Cell Significance Index: 26.1400 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.3045
Cell Significance Index: 134.6100 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: 0.2941
Cell Significance Index: 20.8000 - Cell Name: fallopian tube secretory epithelial cell (CL4030006)
Fold Change: 0.2656
Cell Significance Index: 4.1100 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: 0.2460
Cell Significance Index: 4.1200 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.2316
Cell Significance Index: 126.4800 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 0.1787
Cell Significance Index: 35.4600 - Cell Name: skin fibroblast (CL0002620)
Fold Change: 0.1776
Cell Significance Index: 0.4100 - Cell Name: skeletal muscle myoblast (CL0000515)
Fold Change: 0.1716
Cell Significance Index: 1.8700 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.1388
Cell Significance Index: 125.3300 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: 0.1335
Cell Significance Index: 7.0100 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: 0.1173
Cell Significance Index: 53.2200 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: 0.1124
Cell Significance Index: 6.3100 - Cell Name: pancreatic endocrine cell (CL0008024)
Fold Change: 0.1032
Cell Significance Index: 11.7800 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.0753
Cell Significance Index: 141.8200 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: 0.0579
Cell Significance Index: 9.8900 - Cell Name: lactocyte (CL0002325)
Fold Change: 0.0519
Cell Significance Index: 6.7000 - Cell Name: microcirculation associated smooth muscle cell (CL0008035)
Fold Change: 0.0310
Cell Significance Index: 0.2600 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: 0.0285
Cell Significance Index: 20.8600 - Cell Name: anterior lens cell (CL0002223)
Fold Change: -0.0029
Cell Significance Index: -5.2800 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0043
Cell Significance Index: -6.5700 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: -0.0112
Cell Significance Index: -7.1100 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0186
Cell Significance Index: -13.7600 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0203
Cell Significance Index: -12.6700 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: -0.0247
Cell Significance Index: -4.4600 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: -0.0249
Cell Significance Index: -8.9200 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: -0.0258
Cell Significance Index: -35.1300 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: -0.0363
Cell Significance Index: -5.9100 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0499
Cell Significance Index: -28.1300 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0510
Cell Significance Index: -38.5900 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.0707
Cell Significance Index: -20.3400 - Cell Name: colon goblet cell (CL0009039)
Fold Change: -0.0730
Cell Significance Index: -7.2300 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: -0.0800
Cell Significance Index: -2.8100 - Cell Name: intestinal epithelial cell (CL0002563)
Fold Change: -0.0903
Cell Significance Index: -0.9400 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.0984
Cell Significance Index: -20.7300 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.1644
Cell Significance Index: -16.7900 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.1684
Cell Significance Index: -24.4800 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: -0.1705
Cell Significance Index: -20.9600 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: -0.1783
Cell Significance Index: -19.4000 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.1923
Cell Significance Index: -22.0300 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: -0.2101
Cell Significance Index: -24.4900 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: -0.2486
Cell Significance Index: -11.5900 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: -0.2973
Cell Significance Index: -5.1000 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: -0.3053
Cell Significance Index: -13.8400 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: -0.3159
Cell Significance Index: -21.8500 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: -0.3238
Cell Significance Index: -19.9000 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.3317
Cell Significance Index: -34.5400 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: -0.3325
Cell Significance Index: -9.5800 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: -0.3653
Cell Significance Index: -21.9300 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: -0.3719
Cell Significance Index: -43.8600 - Cell Name: kidney cell (CL1000497)
Fold Change: -0.3983
Cell Significance Index: -3.1800 - Cell Name: leptomeningeal cell (CL0000708)
Fold Change: -0.4089
Cell Significance Index: -8.7400 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: -0.4428
Cell Significance Index: -11.0700 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.4461
Cell Significance Index: -27.3500 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: -0.4585
Cell Significance Index: -34.1800 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.4841
Cell Significance Index: -38.3400 - Cell Name: skeletal muscle satellite stem cell (CL0008011)
Fold Change: -0.5019
Cell Significance Index: -5.2400 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: -0.5132
Cell Significance Index: -26.7300 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.5288
Cell Significance Index: -35.5600 - Cell Name: peg cell (CL4033014)
Fold Change: -0.5423
Cell Significance Index: -12.5300 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: -0.5966
Cell Significance Index: -12.9300 - Cell Name: early pro-B cell (CL0002046)
Fold Change: -0.6149
Cell Significance Index: -39.6700 - Cell Name: connective tissue cell (CL0002320)
Fold Change: -0.6327
Cell Significance Index: -6.1000 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: -0.6931
Cell Significance Index: -19.3700 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: -0.7234
Cell Significance Index: -23.1700 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: -0.7440
Cell Significance Index: -38.6500 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: -0.7568
Cell Significance Index: -47.7000 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.7619
Cell Significance Index: -33.7000 - Cell Name: fibroblast of the aortic adventitia (CL0002547)
Fold Change: -0.7690
Cell Significance Index: -7.7600 - Cell Name: keratocyte (CL0002363)
Fold Change: -0.8396
Cell Significance Index: -13.3200 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: -0.8415
Cell Significance Index: -29.4800
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 3837739011
Symbol: CO6A1_HUMAN
Name: Collagen alpha-1(VI) chain
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 2551668
Title: Sequence analysis of alpha 1(VI) and alpha 2(VI) chains of human type VI collagen reveals internal triplication of globular domains similar to the A domains of von Willebrand factor and two alpha 2(VI) chain variants that differ in the carboxy terminus.
PubMed ID: 2551668
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 8168508
Title: Recombinant expression and structural and binding properties of alpha 1(VI) and alpha 2(VI) chains of human collagen type VI.
PubMed ID: 8168508
PubMed ID: 9107679
Title: Human COL6A1: genomic characterization of the globular domains, structural and evolutionary comparison with COL6A2.
PubMed ID: 9107679
PubMed ID: 6852033
Title: Further characterization of the three polypeptide chains of bovine and human short-chain collagen (intima collagen).
PubMed ID: 6852033
PubMed ID: 3198591
Title: Amino acid sequence of the triple-helical domain of human collagen type VI.
PubMed ID: 3198591
PubMed ID: 1765372
Title: The exon organization of the triple-helical coding regions of the human alpha 1(VI) and alpha 2(VI) collagen genes is highly similar.
PubMed ID: 1765372
PubMed ID: 3665927
Title: Characterization of three constituent chains of collagen type VI by peptide sequences and cDNA clones.
PubMed ID: 3665927
PubMed ID: 3348212
Title: Cloning and chromosomal localization of human genes encoding the three chains of type VI collagen.
PubMed ID: 3348212
PubMed ID: 19159218
Title: Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.
PubMed ID: 19159218
DOI: 10.1021/pr8008012
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 22905912
Title: Resveratrol-induced changes of the human adipocyte secretion profile.
PubMed ID: 22905912
DOI: 10.1021/pr300539b
PubMed ID: 24275569
Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.
PubMed ID: 24275569
PubMed ID: 8782832
Title: Type VI collagen mutations in Bethlem myopathy, an autosomal dominant myopathy with contractures.
PubMed ID: 8782832
DOI: 10.1038/ng0996-113
PubMed ID: 11865138
Title: Novel mutations in collagen VI genes: expansion of the Bethlem myopathy phenotype.
PubMed ID: 11865138
DOI: 10.1212/wnl.58.4.593
PubMed ID: 16130093
Title: Dominant and recessive COL6A1 mutations in Ullrich scleroatonic muscular dystrophy.
PubMed ID: 16130093
DOI: 10.1002/ana.20586
PubMed ID: 15689448
Title: Automated genomic sequence analysis of the three collagen VI genes: applications to Ullrich congenital muscular dystrophy and Bethlem myopathy.
PubMed ID: 15689448
PubMed ID: 15955946
Title: Detection of common and private mutations in the COL6A1 gene of patients with Bethlem myopathy.
PubMed ID: 15955946
PubMed ID: 17785674
Title: Reduced cell anchorage may cause sarcolemma-specific collagen VI deficiency in Ullrich disease.
PubMed ID: 17785674
PubMed ID: 30345904
Title: The impact of PYROXD1 deficiency on cellular respiration and correlations with genetic analyses of limb-girdle muscular dystrophy in Saudi Arabia and Sudan.
PubMed ID: 30345904
Sequence Information:
- Length: 1028
- Mass: 108529
- Checksum: 04AFF538002A01CD
- Sequence:
MRAARALLPL LLQACWTAAQ DEPETPRAVA FQDCPVDLFF VLDTSESVAL RLKPYGALVD KVKSFTKRFI DNLRDRYYRC DRNLVWNAGA LHYSDEVEII QGLTRMPGGR DALKSSVDAV KYFGKGTYTD CAIKKGLEQL LVGGSHLKEN KYLIVVTDGH PLEGYKEPCG GLEDAVNEAK HLGVKVFSVA ITPDHLEPRL SIIATDHTYR RNFTAADWGQ SRDAEEAISQ TIDTIVDMIK NNVEQVCCSF ECQPARGPPG LRGDPGFEGE RGKPGLPGEK GEAGDPGRPG DLGPVGYQGM KGEKGSRGEK GSRGPKGYKG EKGKRGIDGV DGVKGEMGYP GLPGCKGSPG FDGIQGPPGP KGDPGAFGLK GEKGEPGADG EAGRPGSSGP SGDEGQPGEP GPPGEKGEAG DEGNPGPDGA PGERGGPGER GPRGTPGTRG PRGDPGEAGP QGDQGREGPV GVPGDPGEAG PIGPKGYRGD EGPPGSEGAR GAPGPAGPPG DPGLMGERGE DGPAGNGTEG FPGFPGYPGN RGAPGINGTK GYPGLKGDEG EAGDPGDDNN DIAPRGVKGA KGYRGPEGPQ GPPGHQGPPG PDECEILDII MKMCSCCECK CGPIDLLFVL DSSESIGLQN FEIAKDFVVK VIDRLSRDEL VKFEPGQSYA GVVQYSHSQM QEHVSLRSPS IRNVQELKEA IKSLQWMAGG TFTGEALQYT RDQLLPPSPN NRIALVITDG RSDTQRDTTP LNVLCSPGIQ VVSVGIKDVF DFIPGSDQLN VISCQGLAPS QGRPGLSLVK ENYAELLEDA FLKNVTAQIC IDKKCPDYTC PITFSSPADI TILLDGSASV GSHNFDTTKR FAKRLAERFL TAGRTDPAHD VRVAVVQYSG TGQQRPERAS LQFLQNYTAL ASAVDAMDFI NDATDVNDAL GYVTRFYREA SSGAAKKRLL LFSDGNSQGA TPAAIEKAVQ EAQRAGIEIF VVVVGRQVNE PHIRVLVTGK TAEYDVAYGE SHLFRVPSYQ ALLRGVFHQT VSRKVALG
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.