Details for: COL11A1
Associated with
Cells (max top 100)
(Marker Score score is uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: epithelial cell of lower respiratory tract (CL0002632)
Fold Change: 3.67
Marker Score: 15305 - Cell Name: ovarian surface epithelial cell (CL2000064)
Fold Change: 2.51
Marker Score: 6839 - Cell Name: chandelier pvalb GABAergic cortical interneuron (CL4023036)
Fold Change: 2.18
Marker Score: 9029 - Cell Name: oligodendrocyte precursor cell (CL0002453)
Fold Change: 2.08
Marker Score: 2567 - Cell Name: near-projecting glutamatergic cortical neuron (CL4023012)
Fold Change: 2.02
Marker Score: 19029 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: 1.9
Marker Score: 33719 - Cell Name: preosteoblast (CL0007010)
Fold Change: 1.89
Marker Score: 536 - Cell Name: granulosa cell (CL0000501)
Fold Change: 1.86
Marker Score: 18741 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 1.84
Marker Score: 113081 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: 1.61
Marker Score: 16606 - Cell Name: vip GABAergic cortical interneuron (CL4023016)
Fold Change: 1.61
Marker Score: 61014 - Cell Name: bronchus fibroblast of lung (CL2000093)
Fold Change: 1.57
Marker Score: 2155 - Cell Name: neural progenitor cell (CL0011020)
Fold Change: 1.53
Marker Score: 5925 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: 1.46
Marker Score: 13850 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: 1.34
Marker Score: 2071 - Cell Name: A2 amacrine cell (CL0004219)
Fold Change: 1.28
Marker Score: 405 - Cell Name: interstitial cell of ovary (CL0002094)
Fold Change: 1.23
Marker Score: 8009 - Cell Name: cardiac endothelial cell (CL0010008)
Fold Change: 1.23
Marker Score: 2322 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: 1.22
Marker Score: 2687 - Cell Name: immature innate lymphoid cell (CL0001082)
Fold Change: 1.21
Marker Score: 2470 - Cell Name: lymphoid lineage restricted progenitor cell (CL0000838)
Fold Change: 1.16
Marker Score: 698 - Cell Name: mesothelial cell of epicardium (CL0011019)
Fold Change: 1.15
Marker Score: 369 - Cell Name: granulocyte monocyte progenitor cell (CL0000557)
Fold Change: 1.14
Marker Score: 720 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: 1.13
Marker Score: 331 - Cell Name: Unknown (CL0002371)
Fold Change: 1.12
Marker Score: 1191 - Cell Name: goblet cell (CL0000160)
Fold Change: 1.11
Marker Score: 7406 - Cell Name: Leydig cell (CL0000178)
Fold Change: 1.1
Marker Score: 1187 - Cell Name: keratinocyte (CL0000312)
Fold Change: 1.08
Marker Score: 898 - Cell Name: early T lineage precursor (CL0002425)
Fold Change: 1.03
Marker Score: 788 - Cell Name: cerebral cortex GABAergic interneuron (CL0010011)
Fold Change: 1
Marker Score: 71789 - Cell Name: forebrain radial glial cell (CL0013000)
Fold Change: 1
Marker Score: 48014 - Cell Name: absorptive cell (CL0000212)
Fold Change: 0.98
Marker Score: 30405 - Cell Name: cerebellar granule cell precursor (CL0002362)
Fold Change: 0.97
Marker Score: 544 - Cell Name: photoreceptor cell (CL0000210)
Fold Change: 0.96
Marker Score: 721 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 0.95
Marker Score: 2413 - Cell Name: transit amplifying cell (CL0009010)
Fold Change: 0.94
Marker Score: 5340 - Cell Name: abnormal cell (CL0001061)
Fold Change: 0.91
Marker Score: 2738 - Cell Name: brainstem motor neuron (CL2000047)
Fold Change: 0.91
Marker Score: 530 - Cell Name: astrocyte (CL0000127)
Fold Change: 0.91
Marker Score: 790 - Cell Name: astrocyte of the cerebral cortex (CL0002605)
Fold Change: 0.89
Marker Score: 19026 - Cell Name: chondrocyte (CL0000138)
Fold Change: 0.88
Marker Score: 397 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 0.87
Marker Score: 5278 - Cell Name: mature astrocyte (CL0002627)
Fold Change: 0.8
Marker Score: 528 - Cell Name: leptomeningeal cell (CL0000708)
Fold Change: 0.78
Marker Score: 383 - Cell Name: intestinal epithelial cell (CL0002563)
Fold Change: 0.77
Marker Score: 1256 - Cell Name: brush cell (CL0002204)
Fold Change: 0.77
Marker Score: 703 - Cell Name: neuron (CL0000540)
Fold Change: 0.76
Marker Score: 3095 - Cell Name: Cajal-Retzius cell (CL0000695)
Fold Change: 0.76
Marker Score: 392 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.74
Marker Score: 3108 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: 0.74
Marker Score: 11571 - Cell Name: kidney proximal convoluted tubule epithelial cell (CL1000838)
Fold Change: 0.72
Marker Score: 1486 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: 0.7
Marker Score: 6006 - Cell Name: neutrophil progenitor cell (CL0000834)
Fold Change: 0.69
Marker Score: 178 - Cell Name: choroid plexus epithelial cell (CL0000706)
Fold Change: 0.68
Marker Score: 622.5 - Cell Name: plasma cell (CL0000786)
Fold Change: 0.68
Marker Score: 754 - Cell Name: precursor B cell (CL0000817)
Fold Change: 0.66
Marker Score: 436 - Cell Name: Mueller cell (CL0000636)
Fold Change: 0.66
Marker Score: 912 - Cell Name: neuron associated cell (sensu Vertebrata) (CL0000123)
Fold Change: 0.65
Marker Score: 3406 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: 0.65
Marker Score: 1099 - Cell Name: osteoblast (CL0000062)
Fold Change: 0.62
Marker Score: 335 - Cell Name: myeloid cell (CL0000763)
Fold Change: 0.61
Marker Score: 977.5 - Cell Name: renal beta-intercalated cell (CL0002201)
Fold Change: 0.6
Marker Score: 190 - Cell Name: melanocyte (CL0000148)
Fold Change: 0.59
Marker Score: 241 - Cell Name: Schwann cell (CL0002573)
Fold Change: 0.59
Marker Score: 206 - Cell Name: intestinal enteroendocrine cell (CL1001516)
Fold Change: 0.58
Marker Score: 462 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.57
Marker Score: 218 - Cell Name: common myeloid progenitor (CL0000049)
Fold Change: 0.56
Marker Score: 148 - Cell Name: megakaryocyte-erythroid progenitor cell (CL0000050)
Fold Change: 0.55
Marker Score: 231 - Cell Name: vascular leptomeningeal cell (CL4023051)
Fold Change: 0.55
Marker Score: 629 - Cell Name: mesothelial cell (CL0000077)
Fold Change: 0.54
Marker Score: 218 - Cell Name: GABAergic amacrine cell (CL4030027)
Fold Change: 0.54
Marker Score: 1095 - Cell Name: smooth muscle myoblast (CL0000514)
Fold Change: 0.54
Marker Score: 257 - Cell Name: tracheobronchial smooth muscle cell (CL0019019)
Fold Change: 0.53
Marker Score: 154 - Cell Name: inhibitory interneuron (CL0000498)
Fold Change: 0.52
Marker Score: 2402 - Cell Name: ependymal cell (CL0000065)
Fold Change: 0.51
Marker Score: 179 - Cell Name: stellate neuron (CL0000122)
Fold Change: 0.51
Marker Score: 2720 - Cell Name: meningeal macrophage (CL0000879)
Fold Change: 0.5
Marker Score: 141 - Cell Name: respiratory epithelial cell (CL0002368)
Fold Change: 0.49
Marker Score: 271 - Cell Name: glycinergic amacrine cell (CL4030028)
Fold Change: 0.49
Marker Score: 460.5 - Cell Name: pro-B cell (CL0000826)
Fold Change: 0.49
Marker Score: 470 - Cell Name: mesangial cell (CL0000650)
Fold Change: 0.48
Marker Score: 581 - Cell Name: neural cell (CL0002319)
Fold Change: 0.47
Marker Score: 228 - Cell Name: precursor cell (CL0011115)
Fold Change: 0.46
Marker Score: 112 - Cell Name: glial cell (CL0000125)
Fold Change: 0.46
Marker Score: 503 - Cell Name: CNS interneuron (CL0000402)
Fold Change: 0.44
Marker Score: 210 - Cell Name: retinal cone cell (CL0000573)
Fold Change: 0.44
Marker Score: 1251 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: 0.44
Marker Score: 526 - Cell Name: germ cell (CL0000586)
Fold Change: 0.43
Marker Score: 751 - Cell Name: mononuclear cell (CL0000842)
Fold Change: 0.4
Marker Score: 128 - Cell Name: neuronal receptor cell (CL0000006)
Fold Change: 0.4
Marker Score: 175 - Cell Name: epicardial adipocyte (CL1000309)
Fold Change: 0.39
Marker Score: 190 - Cell Name: parietal epithelial cell (CL1000452)
Fold Change: 0.39
Marker Score: 140 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: 0.37
Marker Score: 116 - Cell Name: lung neuroendocrine cell (CL1000223)
Fold Change: 0.37
Marker Score: 103 - Cell Name: mast cell (CL0000097)
Fold Change: 0.36
Marker Score: 209 - Cell Name: microglial cell (CL0000129)
Fold Change: 0.35
Marker Score: 642 - Cell Name: fibroblast of cardiac tissue (CL0002548)
Fold Change: 0.35
Marker Score: 2108 - Cell Name: kidney interstitial cell (CL1000500)
Fold Change: 0.35
Marker Score: 249 - Cell Name: retinal ganglion cell (CL0000740)
Fold Change: 0.34
Marker Score: 427 - Cell Name: kidney proximal straight tubule epithelial cell (CL1000839)
Fold Change: 0.34
Marker Score: 795
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Other Information
Genular Protein ID: 1440024130
Symbol: COBA1_HUMAN
Name: Collagen alpha-1(XI) chain
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 1690726
Title: Pro-alpha 1(XI) collagen. Structure of the amino-terminal propeptide and expression of the gene in tumor cell lines.
PubMed ID: 1690726
PubMed ID: 10486316
Title: Splicing mutations of 54-bp exons in the COL11A1 gene cause Marshall syndrome, but other mutations cause overlapping Marshall/Stickler phenotypes.
PubMed ID: 10486316
DOI: 10.1086/302585
PubMed ID: 16710414
Title: The DNA sequence and biological annotation of human chromosome 1.
PubMed ID: 16710414
DOI: 10.1038/nature04727
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 3182841
Title: Cloning and sequencing of pro-alpha 1 (XI) collagen cDNA demonstrates that type XI belongs to the fibrillar class of collagens and reveals that the expression of the gene is not restricted to cartilagenous tissue.
PubMed ID: 3182841
PubMed ID: 7721876
Title: Alternative mRNA processing occurs in the variable region of the pro-alpha 1(XI) and pro-alpha 2(XI) collagen chains.
PubMed ID: 7721876
PubMed ID: 30245514
Title: Splice-altering variant in COL11A1 as a cause of nonsyndromic hearing loss DFNA37.
PubMed ID: 30245514
PubMed ID: 8872475
Title: A family with Stickler syndrome type 2 has a mutation in the COL11A1 gene resulting in the substitution of glycine 97 by valine in alpha-1(XI) collagen.
PubMed ID: 8872475
DOI: 10.1093/hmg/5.9.1339
PubMed ID: 16959974
Title: The consensus coding sequences of human breast and colorectal cancers.
PubMed ID: 16959974
PubMed ID: 21035103
Title: Fibrochondrogenesis results from mutations in the COL11A1 type XI collagen gene.
PubMed ID: 21035103
PubMed ID: 20513134
Title: Stickler syndrome and the vitreous phenotype: mutations in COL2A1 and COL11A1.
PubMed ID: 20513134
DOI: 10.1002/humu.21257
Sequence Information:
- Length: 1806
- Mass: 181065
- Checksum: 7CBF744263321B43
- Sequence:
MEPWSSRWKT KRWLWDFTVT TLALTFLFQA REVRGAAPVD VLKALDFHNS PEGISKTTGF CTNRKNSKGS DTAYRVSKQA QLSAPTKQLF PGGTFPEDFS ILFTVKPKKG IQSFLLSIYN EHGIQQIGVE VGRSPVFLFE DHTGKPAPED YPLFRTVNIA DGKWHRVAIS VEKKTVTMIV DCKKKTTKPL DRSERAIVDT NGITVFGTRI LDEEVFEGDI QQFLITGDPK AAYDYCEHYS PDCDSSAPKA AQAQEPQIDE YAPEDIIEYD YEYGEAEYKE AESVTEGPTV TEETIAQTEA NIVDDFQEYN YGTMESYQTE APRHVSGTNE PNPVEEIFTE EYLTGEDYDS QRKNSEDTLY ENKEIDGRDS DLLVDGDLGE YDFYEYKEYE DKPTSPPNEE FGPGVPAETD ITETSINGHG AYGEKGQKGE PAVVEPGMLV EGPPGPAGPA GIMGPPGLQG PTGPPGDPGD RGPPGRPGLP GADGLPGPPG TMLMLPFRYG GDGSKGPTIS AQEAQAQAIL QQARIALRGP PGPMGLTGRP GPVGGPGSSG AKGESGDPGP QGPRGVQGPP GPTGKPGKRG RPGADGGRGM PGEPGAKGDR GFDGLPGLPG DKGHRGERGP QGPPGPPGDD GMRGEDGEIG PRGLPGEAGP RGLLGPRGTP GAPGQPGMAG VDGPPGPKGN MGPQGEPGPP GQQGNPGPQG LPGPQGPIGP PGEKGPQGKP GLAGLPGADG PPGHPGKEGQ SGEKGALGPP GPQGPIGYPG PRGVKGADGV RGLKGSKGEK GEDGFPGFKG DMGLKGDRGE VGQIGPRGED GPEGPKGRAG PTGDPGPSGQ AGEKGKLGVP GLPGYPGRQG PKGSTGFPGF PGANGEKGAR GVAGKPGPRG QRGPTGPRGS RGARGPTGKP GPKGTSGGDG PPGPPGERGP QGPQGPVGFP GPKGPPGPPG KDGLPGHPGQ RGETGFQGKT GPPGPGGVVG PQGPTGETGP IGERGHPGPP GPPGEQGLPG AAGKEGAKGD PGPQGISGKD GPAGLRGFPG ERGLPGAQGA PGLKGGEGPQ GPPGPVGSPG ERGSAGTAGP IGLPGRPGPQ GPPGPAGEKG APGEKGPQGP AGRDGVQGPV GLPGPAGPAG SPGEDGDKGE IGEPGQKGSK GDKGENGPPG PPGLQGPVGA PGIAGGDGEP GPRGQQGMFG QKGDEGARGF PGPPGPIGLQ GLPGPPGEKG ENGDVGPMGP PGPPGPRGPQ GPNGADGPQG PPGSVGSVGG VGEKGEPGEA GNPGPPGEAG VGGPKGERGE KGEAGPPGAA GPPGAKGPPG DDGPKGNPGP VGFPGDPGPP GEPGPAGQDG VGGDKGEDGD PGQPGPPGPS GEAGPPGPPG KRGPPGAAGA EGRQGEKGAK GEAGAEGPPG KTGPVGPQGP AGKPGPEGLR GIPGPVGEQG LPGAAGQDGP PGPMGPPGLP GLKGDPGSKG EKGHPGLIGL IGPPGEQGEK GDRGLPGTQG SPGAKGDGGI PGPAGPLGPP GPPGLPGPQG PKGNKGSTGP AGQKGDSGLP GPPGSPGPPG EVIQPLPILS SKKTRRHTEG MQADADDNIL DYSDGMEEIF GSLNSLKQDI EHMKFPMGTQ TNPARTCKDL QLSHPDFPDG EYWIDPNQGC SGDSFKVYCN FTSGGETCIY PDKKSEGVRI SSWPKEKPGS WFSEFKRGKL LSYLDVEGNS INMVQMTFLK LLTASARQNF TYHCHQSAAW YDVSSGSYDK ALRFLGSNDE EMSYDNNPFI KTLYDGCASR KGYEKTVIEI NTPKIDQVPI VDVMINDFGD QNQKFGFEVG PVCFLG
Genular Protein ID: 4023639274
Symbol: Q59HB5_HUMAN
Name: N/A
UniProtKB Accession Codes:
Database IDs:
Sequence Information:
- Length: 1017
- Mass: 99966
- Checksum: A50D0DB279FA164F
- Sequence:
KVTEEKLVKL AQEGKMALKD PKVEQAQLET QVLQVKQEKR ENLEFQDYQD IQEDKVQRIS DVIGSTGFPG FPGANGEKGA RGVAGKPGPR GQRGPTGPRG SRGARGPTGK PGPKGTSGGD GPPGPPGERG PQGPQGPVGF PGPKGPPGPP GKDGLPGHPG QRGETGFQGK TGPPGPGGVV GPQGPTGETG PIGERGHPGP PGPPGEQGLP GAAGKEGAKG DPGPQGISGK DGPAGLRGFP GERGLPGAQG APGLKGGEGP QGPPGPVGSP GERGSAGTAG PIGLPGRPGP QGPPGPAGEK GAPGEKGPQG PAGRDGVQGP VGLPGPAGPA GSPGEDGDKG EIGEPGQKGS KGDKGENGPP GPPGLQGPVG APGIAGGDGE PGPRGQQGMF GQKGDEGARG FPGPPGPIGL QGLPGPPGEK GENGDVGPMG PPGPPGPRGP QGPNGADGPQ GPPGSVGSVG GVGEKGEPGE AGNPGPPGEA GVGGPKGERG EKGEAGPPGA AGPPGAKGPP GDDGPKGNPG PVGFPGDPGP PGELGPAGQD GVGGDKGEDG DPGQPGPPGP SGEAGPPGPP GKRGPPGAAG AEGRQGEKGA KGEAGAEGPP GKTGPVGPQG PAGKPGPEGL RGIPGPVGEQ GLPGAAGQDG PPGPMGPPGL PGLKGDPGSK GEKGHPGLIG LIGPPGEQGE KGDRGLPGTQ GSPGAKGDGG IPGPAGPLGP PGPPGLPGPQ GPKGNKGSTG PAGQKGDSGL PGPPGPPGPP GEVIQPLPIL SSKKTRRHTE GMQADADDNI LDYSDGMEEI FGSLNSLKQD IEHMKFPMGT QTNPARTCKD LQLSHPDFPD GEYWIDPNQG CSGDSFKVYC NFTSGGETCI YPDKKSEGVR ISSWPKEKPG SWFSEFKRGK LLSYLDVEGN SINMVQMTFL KLLTASARQN FTYHCHQSAA WYDVSSGSYD KALRFLGSND EEMSYDNNPF IKTLYDGCAS RKGYEKTVIE INTPKIDQVP IVDVMINDFG DQNQKFGFEV GPVCFLG
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. For the full schema, download it here.