Details for: COL16A1
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 105.1871
Cell Significance Index: -26.6800 - Cell Name: mucosal type mast cell (CL0000485)
Fold Change: 58.7190
Cell Significance Index: -23.8600 - Cell Name: smooth muscle fiber of ileum (CL1000278)
Fold Change: 56.0871
Cell Significance Index: -26.4800 - Cell Name: ileal goblet cell (CL1000326)
Fold Change: 39.6187
Cell Significance Index: -26.5900 - Cell Name: ciliated cell of the bronchus (CL0002332)
Fold Change: 25.0015
Cell Significance Index: -23.8700 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 6.7511
Cell Significance Index: -26.6400 - Cell Name: paneth cell of colon (CL0009009)
Fold Change: 2.1997
Cell Significance Index: 32.9600 - Cell Name: interstitial cell of ovary (CL0002094)
Fold Change: 1.4531
Cell Significance Index: 18.6100 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: 1.1174
Cell Significance Index: 32.0300 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: 1.0735
Cell Significance Index: 22.4700 - Cell Name: preadipocyte (CL0002334)
Fold Change: 0.8270
Cell Significance Index: 16.1400 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.8269
Cell Significance Index: 296.6000 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 0.7930
Cell Significance Index: 128.9700 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 0.7830
Cell Significance Index: 85.1700 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.7011
Cell Significance Index: 20.2000 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: 0.5994
Cell Significance Index: 30.2900 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 0.5607
Cell Significance Index: 33.6600 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: 0.5509
Cell Significance Index: 38.9600 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: 0.5038
Cell Significance Index: 14.0800 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 0.4114
Cell Significance Index: 82.5200 - Cell Name: cortical thymic epithelial cell (CL0002364)
Fold Change: 0.3863
Cell Significance Index: 3.2000 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 0.2323
Cell Significance Index: 31.9000 - Cell Name: keratocyte (CL0002363)
Fold Change: 0.2023
Cell Significance Index: 3.2100 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.1991
Cell Significance Index: 88.0100 - Cell Name: photoreceptor cell (CL0000210)
Fold Change: 0.1969
Cell Significance Index: 2.7700 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.1944
Cell Significance Index: 19.2300 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.1880
Cell Significance Index: 35.7900 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.0867
Cell Significance Index: 78.3000 - Cell Name: odontoblast (CL0000060)
Fold Change: 0.0637
Cell Significance Index: 8.1600 - Cell Name: fallopian tube secretory epithelial cell (CL4030006)
Fold Change: 0.0452
Cell Significance Index: 0.7000 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: 0.0075
Cell Significance Index: 3.3900 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.0033
Cell Significance Index: 0.1500 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.0032
Cell Significance Index: 2.2100 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: 0.0027
Cell Significance Index: 0.0500 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: 0.0023
Cell Significance Index: 0.2700 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: -0.0007
Cell Significance Index: -1.3800 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0105
Cell Significance Index: -16.1000 - Cell Name: anterior lens cell (CL0002223)
Fold Change: -0.0127
Cell Significance Index: -23.4200 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0155
Cell Significance Index: -11.4500 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0169
Cell Significance Index: -10.5800 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: -0.0176
Cell Significance Index: -23.8800 - Cell Name: cell in vitro (CL0001034)
Fold Change: -0.0318
Cell Significance Index: -17.3900 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: -0.0329
Cell Significance Index: -20.9000 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0334
Cell Significance Index: -25.2600 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0361
Cell Significance Index: -20.3500 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0363
Cell Significance Index: -26.6300 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: -0.0397
Cell Significance Index: -3.0500 - Cell Name: lactocyte (CL0002325)
Fold Change: -0.0403
Cell Significance Index: -5.2100 - Cell Name: neoplastic cell (CL0001063)
Fold Change: -0.0637
Cell Significance Index: -12.6500 - Cell Name: basal cell of epidermis (CL0002187)
Fold Change: -0.0672
Cell Significance Index: -1.0200 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.0809
Cell Significance Index: -23.2800 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: -0.0904
Cell Significance Index: -16.3000 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.0954
Cell Significance Index: -5.8500 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.1032
Cell Significance Index: -21.7300 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.1084
Cell Significance Index: -15.7500 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: -0.1140
Cell Significance Index: -19.4700 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: -0.1171
Cell Significance Index: -3.7500 - Cell Name: hippocampal astrocyte (CL0002604)
Fold Change: -0.1244
Cell Significance Index: -1.7400 - Cell Name: pancreatic endocrine cell (CL0008024)
Fold Change: -0.1271
Cell Significance Index: -14.5100 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: -0.1451
Cell Significance Index: -5.1000 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: -0.1534
Cell Significance Index: -18.8600 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.1749
Cell Significance Index: -20.0400 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.1896
Cell Significance Index: -19.3700 - Cell Name: preosteoblast (CL0007010)
Fold Change: -0.1901
Cell Significance Index: -1.7300 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: -0.1930
Cell Significance Index: -4.1100 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.1935
Cell Significance Index: -8.5600 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: -0.2082
Cell Significance Index: -2.8400 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: -0.2132
Cell Significance Index: -15.8900 - Cell Name: astrocyte of the cerebral cortex (CL0002605)
Fold Change: -0.2175
Cell Significance Index: -3.7600 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: -0.2186
Cell Significance Index: -10.2800 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: -0.2300
Cell Significance Index: -6.2600 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.2331
Cell Significance Index: -24.2700 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: -0.2452
Cell Significance Index: -28.9200 - Cell Name: theca cell (CL0000503)
Fold Change: -0.2774
Cell Significance Index: -1.6300 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.3399
Cell Significance Index: -26.9200 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.3505
Cell Significance Index: -23.5700 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: -0.4013
Cell Significance Index: -22.5200 - Cell Name: pulmonary interstitial fibroblast (CL0002241)
Fold Change: -0.4065
Cell Significance Index: -2.5200 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: -0.4320
Cell Significance Index: -27.2300 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: -0.4323
Cell Significance Index: -22.4600 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: -0.4333
Cell Significance Index: -22.5700 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: -0.4420
Cell Significance Index: -27.1700 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: -0.4449
Cell Significance Index: -23.3600 - Cell Name: Sertoli cell (CL0000216)
Fold Change: -0.4520
Cell Significance Index: -6.3400 - Cell Name: BEST4+ enteroycte (CL4030026)
Fold Change: -0.4685
Cell Significance Index: -7.0600 - Cell Name: connective tissue cell (CL0002320)
Fold Change: -0.4699
Cell Significance Index: -4.5300 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: -0.5081
Cell Significance Index: -23.6900 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: -0.5193
Cell Significance Index: -11.2500 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: -0.5249
Cell Significance Index: -9.0000 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.5287
Cell Significance Index: -20.0200 - Cell Name: eukaryotic cell (CL0000255)
Fold Change: -0.5311
Cell Significance Index: -23.1000 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: -0.5424
Cell Significance Index: -17.2800 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: -0.5749
Cell Significance Index: -20.1400 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -0.6213
Cell Significance Index: -20.3400 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: -0.6464
Cell Significance Index: -16.6200 - Cell Name: hippocampal pyramidal neuron (CL1001571)
Fold Change: -0.6984
Cell Significance Index: -19.9300 - Cell Name: mesodermal cell (CL0000222)
Fold Change: -0.7109
Cell Significance Index: -4.4500 - Cell Name: intestinal epithelial cell (CL0002563)
Fold Change: -0.7226
Cell Significance Index: -7.4800 - Cell Name: transit amplifying cell of small intestine (CL0009012)
Fold Change: -0.7294
Cell Significance Index: -15.1300 - Cell Name: fibroblast of breast (CL4006000)
Fold Change: -0.7347
Cell Significance Index: -4.6200
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 850409386
Symbol: COGA1_HUMAN
Name: Collagen alpha-1(XVI) chain
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 1631157
Title: Cloning and chromosomal location of human alpha 1(XVI) collagen.
PubMed ID: 1631157
PubMed ID: 16710414
Title: The DNA sequence and biological annotation of human chromosome 1.
PubMed ID: 16710414
DOI: 10.1038/nature04727
PubMed ID: 7882999
Title: Recombinant analysis of human alpha 1 (XVI) collagen. Evidence for processing of the N-terminal globular domain.
PubMed ID: 7882999
PubMed ID: 15165854
Title: Molecular structure and interaction of recombinant human type XVI collagen.
PubMed ID: 15165854
PubMed ID: 1284248
Title: Molecular cloning and partial characterization of a novel collagen chain, alpha 1(XVI), consisting of repetitive collagenous domains and cysteine-containing non-collagenous segments.
PubMed ID: 1284248
PubMed ID: 15498874
Title: Large-scale cDNA transfection screening for genes related to cancer development and progression.
PubMed ID: 15498874
PubMed ID: 9022684
Title: Biosynthesis and processing of type XVI collagen in human fibroblasts and smooth muscle cells.
PubMed ID: 9022684
PubMed ID: 12782140
Title: Discrete integration of collagen XVI into tissue-specific collagen fibrils or beaded microfibrils.
PubMed ID: 12782140
PubMed ID: 16754661
Title: Collagen XVI harbors an integrin alpha1 beta1 recognition site in its C-terminal domains.
PubMed ID: 16754661
Sequence Information:
- Length: 1604
- Mass: 157751
- Checksum: 5FAA1950DFC6CA3C
- Sequence:
MWVSWAPGLW LLGLWATFGH GANTGAQCPP SQQEGLKLEH SSSLPANVTG FNLIHRLSLM KTSAIKKIRN PKGPLILRLG AAPVTQPTRR VFPRGLPEEF ALVLTLLLKK HTHQKTWYLF QVTDANGYPQ ISLEVNSQER SLELRAQGQD GDFVSCIFPV PQLFDLRWHK LMLSVAGRVA SVHVDCSSAS SQPLGPRRPM RPVGHVFLGL DAEQGKPVSF DLQQVHIYCD PELVLEEGCC EILPAGCPPE TSKARRDTQS NELIEINPQS EGKVYTRCFC LEEPQNSEVD AQLTGRISQK AERGAKVHQE TAADECPPCV HGARDSNVTL APSGPKGGKG ERGLPGPPGS KGEKGARGND CVRISPDAPL QCAEGPKGEK GESGALGPSG LPGSTGEKGQ KGEKGDGGIK GVPGKPGRDG RPGEICVIGP KGQKGDPGFV GPEGLAGEPG PPGLPGPPGI GLPGTPGDPG GPPGPKGDKG SSGIPGKEGP GGKPGKPGVK GEKGDPCEVC PTLPEGFQNF VGLPGKPGPK GEPGDPVPAR GDPGIQGIKG EKGEPCLSCS SVVGAQHLVS STGASGDVGS PGFGLPGLPG RAGVPGLKGE KGNFGEAGPA GSPGPPGPVG PAGIKGAKGE PCEPCPALSN LQDGDVRVVA LPGPSGEKGE PGPPGFGLPG KQGKAGERGL KGQKGDAGNP GDPGTPGTTG RPGLSGEPGV QGPAGPKGEK GDGCTACPSL QGTVTDMAGR PGQPGPKGEQ GPEGVGRPGK PGQPGLPGVQ GPPGLKGVQG EPGPPGRGVQ GPQGEPGAPG LPGIQGLPGP RGPPGPTGEK GAQGSPGVKG ATGPVGPPGA SVSGPPGRDG QQGQTGLRGT PGEKGPRGEK GEPGECSCPS QGDLIFSGMP GAPGLWMGSS WQPGPQGPPG IPGPPGPPGV PGLQGVPGNN GLPGQPGLTA ELGSLPIEQH LLKSICGDCV QGQRAHPGYL VEKGEKGDQG IPGVPGLDNC AQCFLSLERP RAEEARGDNS EGDPGCVGSP GLPGPPGLPG QRGEEGPPGM RGSPGPPGPI GPPGFPGAVG SPGLPGLQGE RGLTGLTGDK GEPGPPGQPG YPGATGPPGL PGIKGERGYT GSAGEKGEPG PPGSEGLPGP PGPAGPRGER GPQGNSGEKG DQGFQGQPGF PGPPGPPGFP GKVGSPGPPG PQAEKGSEGI RGPSGLPGSP GPPGPPGIQG PAGLDGLDGK DGKPGLRGDP GPAGPPGLMG PPGFKGKTGH PGLPGPKGDC GKPGPPGSTG RPGAEGEPGA MGPQGRPGPP GHVGPPGPPG QPGPAGISAV GLKGDRGATG ERGLAGLPGQ PGPPGHPGPP GEPGTDGAAG KEGPPGKQGF YGPPGPKGDP GAAGQKGQAG EKGRAGMPGG PGKSGSMGPV GPPGPAGERG HPGAPGPSGS PGLPGVPGSM GDMVNYDEIK RFIRQEIIKM FDERMAYYTS RMQFPMEMAA APGRPGPPGK DGAPGRPGAP GSPGLPGQIG REGRQGLPGV RGLPGTKGEK GDIGIGIAGE NGLPGPPGPQ GPPGYGKMGA TGPMGQQGIP GIPGPPGPMG QPGKAGHCNP SDCFGAMPME QQYPPMKTMK GPFG
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.