Details for: COL17A1
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: stem cell of epidermis (CL1000428)
Fold Change: 26.6357
Cell Significance Index: 79.2200 - Cell Name: epidermal cell (CL0000362)
Fold Change: 16.6469
Cell Significance Index: 37.5300 - Cell Name: oral mucosa squamous cell (CL1001576)
Fold Change: 8.0880
Cell Significance Index: 69.5000 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: 7.3741
Cell Significance Index: 100.6100 - Cell Name: corneal epithelial cell (CL0000575)
Fold Change: 3.8791
Cell Significance Index: 55.2200 - Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
Fold Change: 3.6209
Cell Significance Index: -9.7000 - Cell Name: cortical thymic epithelial cell (CL0002364)
Fold Change: 3.5766
Cell Significance Index: 29.5800 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: 2.7735
Cell Significance Index: 77.5100 - Cell Name: epithelial cell of lacrimal sac (CL1000436)
Fold Change: 2.3964
Cell Significance Index: 17.2500 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 1.9702
Cell Significance Index: 871.0600 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: 1.9127
Cell Significance Index: 222.9000 - Cell Name: endothelial cell of venule (CL1000414)
Fold Change: 1.6918
Cell Significance Index: 19.2200 - Cell Name: epithelial cell of thymus (CL0002293)
Fold Change: 1.4748
Cell Significance Index: 11.3400 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: 1.4168
Cell Significance Index: 38.5700 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 1.3123
Cell Significance Index: 129.8200 - Cell Name: epidermal Langerhans cell (CL0002457)
Fold Change: 1.3022
Cell Significance Index: -2.8500 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 1.2182
Cell Significance Index: 1099.9800 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: 1.2150
Cell Significance Index: 85.9300 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.9347
Cell Significance Index: 42.3700 - Cell Name: gut absorptive cell (CL0000677)
Fold Change: 0.8982
Cell Significance Index: 53.9200 - Cell Name: intestinal crypt stem cell of colon (CL0009043)
Fold Change: 0.8426
Cell Significance Index: 91.6500 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.8153
Cell Significance Index: 42.3500 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 0.7195
Cell Significance Index: 117.0200 - Cell Name: microfold cell of epithelium of small intestine (CL1000353)
Fold Change: 0.5386
Cell Significance Index: 37.2500 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: 0.4450
Cell Significance Index: 9.6400 - Cell Name: extravillous trophoblast (CL0008036)
Fold Change: 0.3637
Cell Significance Index: 2.2600 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 0.3539
Cell Significance Index: 63.8000 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 0.3340
Cell Significance Index: 41.0700 - Cell Name: basal-myoepithelial cell of mammary gland (CL0002324)
Fold Change: 0.3228
Cell Significance Index: 2.3900 - Cell Name: intestinal epithelial cell (CL0002563)
Fold Change: 0.2922
Cell Significance Index: 3.0300 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.2058
Cell Significance Index: 5.9300 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.0898
Cell Significance Index: 17.0800 - Cell Name: small intestine goblet cell (CL1000495)
Fold Change: 0.0877
Cell Significance Index: 3.0800 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: 0.0372
Cell Significance Index: 0.9300 - Cell Name: medial ganglionic eminence derived interneuron (CL4023063)
Fold Change: 0.0340
Cell Significance Index: 0.4900 - Cell Name: cell in vitro (CL0001034)
Fold Change: 0.0200
Cell Significance Index: 10.9300 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.0149
Cell Significance Index: 10.2900 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: 0.0064
Cell Significance Index: 0.3200 - Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
Fold Change: 0.0019
Cell Significance Index: 0.0400 - Cell Name: placental villous trophoblast (CL2000060)
Fold Change: 0.0000
Cell Significance Index: 0.0000 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: -0.0037
Cell Significance Index: -7.0000 - Cell Name: anterior lens cell (CL0002223)
Fold Change: -0.0058
Cell Significance Index: -10.6100 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0067
Cell Significance Index: -10.2600 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: -0.0082
Cell Significance Index: -11.1200 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0093
Cell Significance Index: -7.0200 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: -0.0118
Cell Significance Index: -8.6400 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0124
Cell Significance Index: -9.2100 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: -0.0129
Cell Significance Index: -8.2200 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.0135
Cell Significance Index: -0.8300 - Cell Name: odontoblast (CL0000060)
Fold Change: -0.0149
Cell Significance Index: -1.9100 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0159
Cell Significance Index: -8.9500 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0172
Cell Significance Index: -10.7300 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0191
Cell Significance Index: -8.6800 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: -0.0199
Cell Significance Index: -7.1400 - Cell Name: neuron associated cell (CL0000095)
Fold Change: -0.0236
Cell Significance Index: -0.9700 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.0243
Cell Significance Index: -7.0000 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: -0.0283
Cell Significance Index: -5.6700 - Cell Name: neoplastic cell (CL0001063)
Fold Change: -0.0286
Cell Significance Index: -5.6800 - Cell Name: fallopian tube secretory epithelial cell (CL4030006)
Fold Change: -0.0381
Cell Significance Index: -0.5900 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: -0.0430
Cell Significance Index: -5.9000 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: -0.0440
Cell Significance Index: -2.0500 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.0507
Cell Significance Index: -7.3700 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.0522
Cell Significance Index: -10.9900 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: -0.0537
Cell Significance Index: -9.1700 - Cell Name: eukaryotic cell (CL0000255)
Fold Change: -0.0557
Cell Significance Index: -2.4200 - Cell Name: enterocyte (CL0000584)
Fold Change: -0.0713
Cell Significance Index: -0.4400 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.0716
Cell Significance Index: -8.2100 - Cell Name: basal epithelial cell of prostatic duct (CL0002236)
Fold Change: -0.0732
Cell Significance Index: -0.6500 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.0743
Cell Significance Index: -7.5900 - Cell Name: epithelial cell of esophagus (CL0002252)
Fold Change: -0.0768
Cell Significance Index: -0.5100 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.0770
Cell Significance Index: -8.0200 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: -0.0812
Cell Significance Index: -2.6000 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: -0.0817
Cell Significance Index: -3.8400 - Cell Name: transit amplifying cell of small intestine (CL0009012)
Fold Change: -0.0887
Cell Significance Index: -1.8400 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: -0.1007
Cell Significance Index: -7.7300 - Cell Name: umbrella cell of urothelium (CL4030056)
Fold Change: -0.1075
Cell Significance Index: -0.9900 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: -0.1132
Cell Significance Index: -2.9100 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.1218
Cell Significance Index: -8.1900 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: -0.1234
Cell Significance Index: -9.2000 - Cell Name: syncytiotrophoblast cell (CL0000525)
Fold Change: -0.1284
Cell Significance Index: -1.2200 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: -0.1323
Cell Significance Index: -2.7700 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.1406
Cell Significance Index: -6.2200 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: -0.1448
Cell Significance Index: -7.5400 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: -0.1542
Cell Significance Index: -9.4800 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: -0.1568
Cell Significance Index: -8.8000 - Cell Name: keratinocyte (CL0000312)
Fold Change: -0.1644
Cell Significance Index: -4.1100 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.1666
Cell Significance Index: -6.3100 - Cell Name: BEST4+ enteroycte (CL4030026)
Fold Change: -0.1805
Cell Significance Index: -2.7200 - Cell Name: stratified epithelial cell (CL0000079)
Fold Change: -0.1817
Cell Significance Index: -6.6700 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: -0.1886
Cell Significance Index: -9.9000 - Cell Name: obsolete epithelial cell of alveolus of lung (CL0010003)
Fold Change: -0.1933
Cell Significance Index: -4.8200 - Cell Name: basal cell (CL0000646)
Fold Change: -0.1992
Cell Significance Index: -2.3700 - Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
Fold Change: -0.1994
Cell Significance Index: -6.9900 - Cell Name: slow muscle cell (CL0000189)
Fold Change: -0.2005
Cell Significance Index: -3.0000 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -0.2185
Cell Significance Index: -7.1600 - Cell Name: tendon cell (CL0000388)
Fold Change: -0.2214
Cell Significance Index: -3.0100 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: -0.2215
Cell Significance Index: -6.3500 - Cell Name: monocyte-derived dendritic cell (CL0011031)
Fold Change: -0.2229
Cell Significance Index: -3.8300 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.2276
Cell Significance Index: -7.9100 - Cell Name: corneal endothelial cell (CL0000132)
Fold Change: -0.2333
Cell Significance Index: -3.5500
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 3163795455
Symbol: COHA1_HUMAN
Name: Collagen alpha-1(XVII) chain
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 1324962
Title: Cloning and primary structural analysis of the bullous pemphigoid autoantigen, BP180.
PubMed ID: 1324962
PubMed ID: 9012408
Title: Cloning of the human type XVII collagen gene (COL17A1), and detection of novel mutations in generalized atrophic benign epidermolysis bullosa.
PubMed ID: 9012408
PubMed ID: 15164054
Title: The DNA sequence and comparative analysis of human chromosome 10.
PubMed ID: 15164054
DOI: 10.1038/nature02462
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 1748679
Title: Genomic organization of collagenous domains and chromosomal assignment of human 180-kDa bullous pemphigoid antigen-2, a novel collagen of stratified squamous epithelium.
PubMed ID: 1748679
PubMed ID: 14675210
Title: The 97-kDa (LABD97) and 120-kDa (LAD-1) fragments of bullous pemphigoid antigen 180/type XVII collagen have different N-termini.
PubMed ID: 14675210
PubMed ID: 9506436
Title: The 97 kDa linear IgA bullous disease antigen is identical to a portion of the extracellular domain of the 180 kDa bullous pemphigoid antigen, BPAg2.
PubMed ID: 9506436
PubMed ID: 8618013
Title: LAD-1, the linear IgA bullous dermatosis autoantigen, is a novel 120-kDa anchoring filament protein synthesized by epidermal cells.
PubMed ID: 8618013
PubMed ID: 8618014
Title: 97-kDa linear IgA bullous dermatosis (LAD) antigen localizes to the lamina lucida of the epidermal basement membrane.
PubMed ID: 8618014
PubMed ID: 9748270
Title: Two forms of collagen XVII in keratinocytes. A full-length transmembrane protein and a soluble ectodomain.
PubMed ID: 9748270
PubMed ID: 10637308
Title: The N terminus of the transmembrane protein BP180 interacts with the N-terminal domain of BP230, thereby mediating keratin cytoskeleton anchorage to the cell surface at the site of the hemidesmosome.
PubMed ID: 10637308
DOI: 10.1091/mbc.11.1.277
PubMed ID: 12356719
Title: Transmembrane collagen XVII, an epithelial adhesion protein, is shed from the cell surface by ADAMs.
PubMed ID: 12356719
DOI: 10.1093/emboj/cdf532
PubMed ID: 12482924
Title: Analysis of the interactions between BP180, BP230, plectin and the integrin alpha6beta4 important for hemidesmosome assembly.
PubMed ID: 12482924
DOI: 10.1242/jcs.00241
PubMed ID: 17545155
Title: Extracellular phosphorylation of collagen XVII by ecto-casein kinase 2 inhibits ectodomain shedding.
PubMed ID: 17545155
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 25676728
Title: Mutations in collagen, type XVII, alpha 1 (COL17A1) cause epithelial recurrent erosion dystrophy (ERED).
PubMed ID: 25676728
DOI: 10.1002/humu.22764
PubMed ID: 8669466
Title: Compound heterozygosity for a dominant glycine substitution and a recessive internal duplication mutation in the type XVII collagen gene results in junctional epidermolysis bullosa and abnormal dentition.
PubMed ID: 8669466
PubMed ID: 9199555
Title: Three novel homozygous point mutations and a new polymorphism in the COL17A1 gene: relation to biological and clinical phenotypes of junctional epidermolysis bullosa.
PubMed ID: 9199555
DOI: 10.1086/515463
PubMed ID: 10652291
Title: Collagen XVII is destabilized by a glycine substitution mutation in the cell adhesion domain Col15.
PubMed ID: 10652291
PubMed ID: 10951237
Title: Hemizygosity for a glycine substitution in collagen XVII: unfolding and degradation of the ectodomain.
PubMed ID: 10951237
PubMed ID: 11912005
Title: A novel homozygous point mutation in the COL17A1 gene in a Chinese family with generalized atrophic benign epidermolysis bullosa.
PubMed ID: 11912005
Sequence Information:
- Length: 1497
- Mass: 150419
- Checksum: E01027005F3AE843
- Sequence:
MDVTKKNKRD GTEVTERIVT ETVTTRLTSL PPKGGTSNGY AKTASLGGGS RLEKQSLTHG SSGYINSTGS TRGHASTSSY RRAHSPASTL PNSPGSTFER KTHVTRHAYE GSSSGNSSPE YPRKEFASSS TRGRSQTRES EIRVRLQSAS PSTRWTELDD VKRLLKGSRS ASVSPTRNSS NTLPIPKKGT VETKIVTASS QSVSGTYDAT ILDANLPSHV WSSTLPAGSS MGTYHNNMTT QSSSLLNTNA YSAGSVFGVP NNMASCSPTL HPGLSTSSSV FGMQNNLAPS LTTLSHGTTT TSTAYGVKKN MPQSPAAVNT GVSTSAACTT SVQSDDLLHK DCKFLILEKD NTPAKKEMEL LIMTKDSGKV FTASPASIAA TSFSEDTLKK EKQAAYNADS GLKAEANGDL KTVSTKGKTT TADIHSYGSS GGGGSGGGGG VGGAGGGPWG PAPAWCPCGS CCSWWKWLLG LLLTWLLLLG LLFGLIALAE EVRKLKARVD ELERIRRSIL PYGDSMDRIE KDRLQGMAPA AGADLDKIGL HSDSQEELWM FVRKKLMMEQ ENGNLRGSPG PKGDMGSPGP KGDRGFPGTP GIPGPLGHPG PQGPKGQKGS VGDPGMEGPM GQRGREGPMG PRGEAGPPGS GEKGERGAAG EPGPHGPPGV PGSVGPKGSS GSPGPQGPPG PVGLQGLRGE VGLPGVKGDK GPMGPPGPKG DQGEKGPRGL TGEPGMRGLP GAVGEPGAKG AMGPAGPDGH QGPRGEQGLT GMPGIRGPPG PSGDPGKPGL TGPQGPQGLP GTPGRPGIKG EPGAPGKIVT SEGSSMLTVP GPPGPPGAMG PPGPPGAPGP AGPAGLPGHQ EVLNLQGPPG PPGPRGPPGP SIPGPPGPRG PPGEGLPGPP GPPGSFLSNS ETFLSGPPGP PGPPGPKGDQ GPPGPRGHQG EQGLPGFSTS GSSSFGLNLQ GPPGPPGPQG PKGDKGDPGV PGALGIPSGP SEGGSSSTMY VSGPPGPPGP PGPPGSISSS GQEIQQYISE YMQSDSIRSY LSGVQGPPGP PGPPGPVTTI TGETFDYSEL ASHVVSYLRT SGYGVSLFSS SISSEDILAV LQRDDVRQYL RQYLMGPRGP PGPPGASGDG SLLSLDYAEL SSRILSYMSS SGISIGLPGP PGPPGLPGTS YEELLSLLRG SEFRGIVGPP GPPGPPGIPG NVWSSISVED LSSYLHTAGL SFIPGPPGPP GPPGPRGPPG VSGALATYAA ENSDSFRSEL ISYLTSPDVR SFIVGPPGPP GPQGPPGDSR LLSTDASHSR GSSSSSHSSS VRRGSSYSSS MSTGGGGAGS LGAGGAFGEA AGDRGPYGTD IGPGGGYGAA AEGGMYAGNG GLLGADFAGD LDYNELAVRV SESMQRQGLL QGMAYTVQGP PGQPGPQGPP GISKVFSAYS NVTADLMDFF QTYGAIQGPP GQKGEMGTPG PKGDRGPAGP PGHPGPPGPR GHKGEKGDKG DQVYAGRRRR RSIAVKP
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.