Details for: COPB1
Associated with
Cells (max top 100)
(Cell Significance Index and respective Thresholds are uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)
- Cell Name: polychromatophilic erythroblast (CL0000550)
Fold Change: 368.1244
Cell Significance Index: -57.2600 - Cell Name: hematopoietic oligopotent progenitor cell (CL0002032)
Fold Change: 221.0190
Cell Significance Index: -56.0600 - Cell Name: embryonic stem cell (CL0002322)
Fold Change: 145.6253
Cell Significance Index: -59.9900 - Cell Name: smooth muscle fiber of ileum (CL1000278)
Fold Change: 134.3083
Cell Significance Index: -63.4100 - Cell Name: mucosal type mast cell (CL0000485)
Fold Change: 125.6593
Cell Significance Index: -51.0500 - Cell Name: peripheral blood mononuclear cell (CL2000001)
Fold Change: 115.3124
Cell Significance Index: -59.3200 - Cell Name: ciliated cell of the bronchus (CL0002332)
Fold Change: 53.8051
Cell Significance Index: -51.3700 - Cell Name: orthochromatic erythroblast (CL0000552)
Fold Change: 49.6611
Cell Significance Index: -61.2300 - Cell Name: CD8-alpha-beta-positive, alpha-beta intraepithelial T cell (CL0000796)
Fold Change: 21.2161
Cell Significance Index: -56.8400 - Cell Name: stromal cell of bone marrow (CL0010001)
Fold Change: 15.7778
Cell Significance Index: -62.2600 - Cell Name: CD8-positive, alpha-beta regulatory T cell (CL0000795)
Fold Change: 13.4236
Cell Significance Index: -41.2300 - Cell Name: epidermal Langerhans cell (CL0002457)
Fold Change: 12.4098
Cell Significance Index: -27.1600 - Cell Name: conjunctival epithelial cell (CL1000432)
Fold Change: 2.3187
Cell Significance Index: 31.6400 - Cell Name: placental villous trophoblast (CL2000060)
Fold Change: 1.6643
Cell Significance Index: 44.4400 - Cell Name: intermediate cell of urothelium (CL4030055)
Fold Change: 1.5861
Cell Significance Index: 285.9300 - Cell Name: basal cell of urothelium (CL1000486)
Fold Change: 1.5856
Cell Significance Index: 194.9700 - Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
Fold Change: 1.1989
Cell Significance Index: 240.4900 - Cell Name: basal cell of prostate epithelium (CL0002341)
Fold Change: 1.1861
Cell Significance Index: 32.2900 - Cell Name: acinar cell of salivary gland (CL0002623)
Fold Change: 1.1515
Cell Significance Index: 53.6900 - Cell Name: cell in vitro (CL0001034)
Fold Change: 1.1482
Cell Significance Index: 627.0700 - Cell Name: neoplastic cell (CL0001063)
Fold Change: 1.1177
Cell Significance Index: 221.8200 - Cell Name: stromal cell of ovary (CL0002132)
Fold Change: 1.0603
Cell Significance Index: 145.6100 - Cell Name: hair follicular keratinocyte (CL2000092)
Fold Change: 0.6957
Cell Significance Index: 307.5700 - Cell Name: obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
Fold Change: 0.6378
Cell Significance Index: 228.7800 - Cell Name: luminal adaptive secretory precursor cell of mammary gland (CL4033057)
Fold Change: 0.6352
Cell Significance Index: 29.8600 - Cell Name: fibroblast of dermis (CL0002551)
Fold Change: 0.6268
Cell Significance Index: 13.1200 - Cell Name: odontoblast (CL0000060)
Fold Change: 0.6186
Cell Significance Index: 79.3000 - Cell Name: lung endothelial cell (CL1001567)
Fold Change: 0.5750
Cell Significance Index: 29.9500 - Cell Name: GABAergic interneuron (CL0011005)
Fold Change: 0.5431
Cell Significance Index: 375.6400 - Cell Name: retinal progenitor cell (CL0002672)
Fold Change: 0.5283
Cell Significance Index: 29.6500 - Cell Name: enterocyte of epithelium of small intestine (CL1000334)
Fold Change: 0.5092
Cell Significance Index: 14.6700 - Cell Name: bladder urothelial cell (CL1001428)
Fold Change: 0.4426
Cell Significance Index: 22.9900 - Cell Name: paneth cell of epithelium of small intestine (CL1000343)
Fold Change: 0.3933
Cell Significance Index: 8.5200 - Cell Name: early pro-B cell (CL0002046)
Fold Change: 0.3181
Cell Significance Index: 20.5300 - Cell Name: sebum secreting cell (CL0000317)
Fold Change: 0.3142
Cell Significance Index: 22.2200 - Cell Name: pancreatic acinar cell (CL0002064)
Fold Change: 0.3044
Cell Significance Index: 51.9700 - Cell Name: tonsil germinal center B cell (CL2000006)
Fold Change: 0.2725
Cell Significance Index: 32.1400 - Cell Name: enterocyte of epithelium of large intestine (CL0002071)
Fold Change: 0.2676
Cell Significance Index: 12.1300 - Cell Name: umbrella cell of urothelium (CL4030056)
Fold Change: 0.2226
Cell Significance Index: 2.0500 - Cell Name: colon goblet cell (CL0009039)
Fold Change: 0.2217
Cell Significance Index: 21.9300 - Cell Name: tuft cell of colon (CL0009041)
Fold Change: 0.1927
Cell Significance Index: 174.0300 - Cell Name: enteroendocrine cell of colon (CL0009042)
Fold Change: 0.1784
Cell Significance Index: 33.9500 - Cell Name: cardiac muscle myoblast (CL0000513)
Fold Change: 0.1690
Cell Significance Index: 12.9700 - Cell Name: lactocyte (CL0002325)
Fold Change: 0.1185
Cell Significance Index: 15.3200 - Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
Fold Change: 0.1091
Cell Significance Index: 8.1300 - Cell Name: pigmented epithelial cell (CL0000529)
Fold Change: 0.0672
Cell Significance Index: 126.5400 - Cell Name: epithelial cell of small intestine (CL0002254)
Fold Change: 0.0517
Cell Significance Index: 8.4100 - Cell Name: non-pigmented ciliary epithelial cell (CL0002304)
Fold Change: 0.0376
Cell Significance Index: 23.8900 - Cell Name: eye photoreceptor cell (CL0000287)
Fold Change: 0.0143
Cell Significance Index: 0.9000 - Cell Name: kidney loop of Henle cortical thick ascending limb epithelial cell (CL1001109)
Fold Change: 0.0041
Cell Significance Index: 3.0100 - Cell Name: forebrain neuroblast (CL1000042)
Fold Change: -0.0033
Cell Significance Index: -0.2100 - Cell Name: anterior lens cell (CL0002223)
Fold Change: -0.0064
Cell Significance Index: -11.7900 - Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
Fold Change: -0.0104
Cell Significance Index: -0.2900 - Cell Name: lens epithelial cell (CL0002224)
Fold Change: -0.0113
Cell Significance Index: -17.4700 - Cell Name: pulmonary alveolar epithelial cell (CL0000322)
Fold Change: -0.0148
Cell Significance Index: -11.2400 - Cell Name: ciliary muscle cell (CL1000443)
Fold Change: -0.0242
Cell Significance Index: -10.9800 - Cell Name: pancreatic A cell (CL0000171)
Fold Change: -0.0299
Cell Significance Index: -22.1200 - Cell Name: pancreatic PP cell (CL0002275)
Fold Change: -0.0384
Cell Significance Index: -23.9800 - Cell Name: secondary lens fiber (CL0002225)
Fold Change: -0.0396
Cell Significance Index: -53.8800 - Cell Name: type B pancreatic cell (CL0000169)
Fold Change: -0.0596
Cell Significance Index: -33.6000 - Cell Name: abnormal cell (CL0001061)
Fold Change: -0.1172
Cell Significance Index: -11.9700 - Cell Name: fibroblast of mammary gland (CL0002555)
Fold Change: -0.1176
Cell Significance Index: -3.3700 - Cell Name: pancreatic D cell (CL0000173)
Fold Change: -0.1408
Cell Significance Index: -29.6600 - Cell Name: mesenchymal cell (CL0008019)
Fold Change: -0.1664
Cell Significance Index: -2.7900 - Cell Name: epithelial cell of stomach (CL0002178)
Fold Change: -0.1733
Cell Significance Index: -20.2000 - Cell Name: dopaminergic neuron (CL0000700)
Fold Change: -0.1811
Cell Significance Index: -52.1100 - Cell Name: pigmented ciliary epithelial cell (CL0002303)
Fold Change: -0.2137
Cell Significance Index: -31.0700 - Cell Name: peg cell (CL4033014)
Fold Change: -0.2307
Cell Significance Index: -5.3300 - Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
Fold Change: -0.2901
Cell Significance Index: -8.5200 - Cell Name: pancreatic ductal cell (CL0002079)
Fold Change: -0.2904
Cell Significance Index: -33.2700 - Cell Name: endothelial cell of placenta (CL0009092)
Fold Change: -0.3095
Cell Significance Index: -1.8700 - Cell Name: granulosa cell (CL0000501)
Fold Change: -0.3719
Cell Significance Index: -9.7800 - Cell Name: cortical cell of adrenal gland (CL0002097)
Fold Change: -0.3846
Cell Significance Index: -10.3100 - Cell Name: pancreatic endocrine cell (CL0008024)
Fold Change: -0.3985
Cell Significance Index: -45.4900 - Cell Name: cerebellar granule cell (CL0001031)
Fold Change: -0.4190
Cell Significance Index: -7.1800 - Cell Name: hippocampal granule cell (CL0001033)
Fold Change: -0.4299
Cell Significance Index: -28.9100 - Cell Name: preadipocyte (CL0002334)
Fold Change: -0.4376
Cell Significance Index: -8.5400 - Cell Name: microcirculation associated smooth muscle cell (CL0008035)
Fold Change: -0.5226
Cell Significance Index: -4.3900 - Cell Name: mesonephric nephron tubule epithelial cell (CL1000022)
Fold Change: -0.5240
Cell Significance Index: -18.2100 - Cell Name: smooth muscle cell of sphincter of pupil (CL0002243)
Fold Change: -0.5532
Cell Significance Index: -57.6000 - Cell Name: kidney loop of Henle descending limb epithelial cell (CL1001021)
Fold Change: -0.5539
Cell Significance Index: -43.8700 - Cell Name: indirect pathway medium spiny neuron (CL4023029)
Fold Change: -0.5880
Cell Significance Index: -26.0100 - Cell Name: glycinergic neuron (CL1001509)
Fold Change: -0.6725
Cell Significance Index: -35.3100 - Cell Name: transit amplifying cell of colon (CL0009011)
Fold Change: -0.6891
Cell Significance Index: -22.0700 - Cell Name: direct pathway medium spiny neuron (CL4023026)
Fold Change: -0.7019
Cell Significance Index: -26.5800 - Cell Name: intestinal tuft cell (CL0019032)
Fold Change: -0.7238
Cell Significance Index: -44.3800 - Cell Name: leptomeningeal cell (CL0000708)
Fold Change: -0.7923
Cell Significance Index: -16.9400 - Cell Name: skeletal muscle fiber (CL0008002)
Fold Change: -0.8722
Cell Significance Index: -22.4200 - Cell Name: pro-T cell (CL0000827)
Fold Change: -0.9950
Cell Significance Index: -25.4200 - Cell Name: neutrophil progenitor cell (CL0000834)
Fold Change: -1.0049
Cell Significance Index: -26.8800 - Cell Name: fibro/adipogenic progenitor cell (CL0009099)
Fold Change: -1.0134
Cell Significance Index: -51.2100 - Cell Name: enteroendocrine cell of small intestine (CL0009006)
Fold Change: -1.0317
Cell Significance Index: -25.7900 - Cell Name: skeletal muscle myoblast (CL0000515)
Fold Change: -1.1112
Cell Significance Index: -12.0800 - Cell Name: kidney epithelial cell (CL0002518)
Fold Change: -1.1116
Cell Significance Index: -32.7400 - Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
Fold Change: -1.1146
Cell Significance Index: -20.6000 - Cell Name: L6b glutamatergic cortical neuron (CL4023038)
Fold Change: -1.2779
Cell Significance Index: -41.8400 - Cell Name: cortical interneuron (CL0008031)
Fold Change: -1.2851
Cell Significance Index: -30.8200 - Cell Name: stratified epithelial cell (CL0000079)
Fold Change: -1.2877
Cell Significance Index: -47.2700 - Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
Fold Change: -1.3002
Cell Significance Index: -41.4100 - Cell Name: Purkinje cell (CL0000121)
Fold Change: -1.3212
Cell Significance Index: -28.9300
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Other Information
Genular Protein ID: 3512341529
Symbol: COPB_HUMAN
Name: Coatomer subunit beta
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 11230166
Title: Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.
PubMed ID: 11230166
DOI: 10.1101/gr.gr1547r
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 7982906
Title: Physical interaction of the HIV-1 Nef protein with beta-COP, a component of non-clathrin-coated vesicles essential for membrane traffic.
PubMed ID: 7982906
PubMed ID: 7573041
Title: The oculocerebrorenal syndrome gene product is a 105-kD protein localized to the Golgi complex.
PubMed ID: 7573041
PubMed ID: 11056392
Title: Identification and characterization of novel isoforms of COP I subunits.
PubMed ID: 11056392
PubMed ID: 11520457
Title: The truncated cytoplasmic tail of HLA-G serves a quality-control function in post-ER compartments.
PubMed ID: 11520457
PubMed ID: 12582157
Title: An essential function of tapasin in quality control of HLA-G molecules.
PubMed ID: 12582157
PubMed ID: 17451557
Title: Multiple and stepwise interactions between coatomer and ADP-ribosylation factor-1 (Arf1)-GTP.
PubMed ID: 17451557
PubMed ID: 18385291
Title: Depletion of beta-COP reveals a role for COP-I in compartmentalization of secretory compartments and in biosynthetic transport of caveolin-1.
PubMed ID: 18385291
PubMed ID: 18556652
Title: Scyl1, mutated in a recessive form of spinocerebellar neurodegeneration, regulates COPI-mediated retrograde traffic.
PubMed ID: 18556652
PubMed ID: 18725938
Title: HIV-1 Nef targets MHC-I and CD4 for degradation via a final common beta-COP-dependent pathway in T cells.
PubMed ID: 18725938
PubMed ID: 18356299
Title: COPI coatomer complex proteins facilitate the translocation of anthrax lethal factor across vesicular membranes in vitro.
PubMed ID: 18356299
PubMed ID: 19413330
Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.
PubMed ID: 19413330
DOI: 10.1021/ac9004309
PubMed ID: 19364919
Title: Early endosomes and endosomal coatomer are required for autophagy.
PubMed ID: 19364919
PubMed ID: 20362547
Title: Enhancement of TREK1 channel surface expression by protein-protein interaction with beta-COP.
PubMed ID: 20362547
PubMed ID: 20056612
Title: Quantitative proteomics analysis of cell cycle-regulated Golgi disassembly and reassembly.
PubMed ID: 20056612
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 22223895
Title: Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.
PubMed ID: 22223895
PubMed ID: 24806965
Title: TMEM115 is an integral membrane protein of the Golgi complex involved in retrograde transport.
PubMed ID: 24806965
DOI: 10.1242/jcs.136754
PubMed ID: 24275569
Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.
PubMed ID: 24275569
PubMed ID: 25944712
Title: N-terminome analysis of the human mitochondrial proteome.
PubMed ID: 25944712
PubMed ID: 30352685
Title: Stasimon/Tmem41b localizes to mitochondria-associated ER membranes and is essential for mouse embryonic development.
PubMed ID: 30352685
PubMed ID: 33632302
Title: Biallelic variants in COPB1 cause a novel, severe intellectual disability syndrome with cataracts and variable microcephaly.
PubMed ID: 33632302
Sequence Information:
- Length: 953
- Mass: 107142
- Checksum: BE916C1C5A599D79
- Sequence:
MTAAENVCYT LINVPMDSEP PSEISLKNDL EKGDVKSKTE ALKKVIIMIL NGEKLPGLLM TIIRFVLPLQ DHTIKKLLLV FWEIVPKTTP DGRLLHEMIL VCDAYRKDLQ HPNEFIRGST LRFLCKLKEA ELLEPLMPAI RACLEHRHSY VRRNAVLAIY TIYRNFEHLI PDAPELIHDF LVNEKDASCK RNAFMMLIHA DQDRALDYLS TCIDQVQTFG DILQLVIVEL IYKVCHANPS ERARFIRCIY NLLQSSSPAV KYEAAGTLVT LSSAPTAIKA AAQCYIDLII KESDNNVKLI VLDRLIELKE HPAHERVLQD LVMDILRVLS TPDLEVRKKT LQLALDLVSS RNVEELVIVL KKEVIKTNNV SEHEDTDKYR QLLVRTLHSC SVRFPDMAAN VIPVLMEFLS DNNEAAAADV LEFVREAIQR FDNLRMLIVE KMLEVFHAIK SVKIYRGALW ILGEYCSTKE DIQSVMTEIR RSLGEIPIVE SEIKKEAGEL KPEEEITVGP VQKLVTEMGT YATQSALSSS RPTKKEEDRP PLRGFLLDGD FFVAASLATT LTKIALRYVA LVQEKKKQNS FVAEAMLLMA TILHLGKSSL PKKPITDDDV DRISLCLKVL SECSPLMNDI FNKECRQSLS HMLSAKLEEE KLSQKKESEK RNVTVQPDDP ISFMQLTAKN EMNCKEDQFQ LSLLAAMGNT QRKEAADPLA SKLNKVTQLT GFSDPVYAEA YVHVNQYDIV LDVLVVNQTS DTLQNCTLEL ATLGDLKLVE KPSPLTLAPH DFANIKANVK VASTENGIIF GNIVYDVSGA ASDRNCVVLS DIHIDIMDYI QPATCTDAEF RQMWAEFEWE NKVTVNTNMV DLNDYLQHIL KSTNMKCLTP EKALSGYCGF MAANLYARSI FGEDALANVS IEKPIHQGPD AAVTGHIRIR AKSQGMALSL GDKINLSQKK TSI
Database document:
This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.