Genular: Defining Cellular Identity and Function

Details for: Ddx5

Gene ID: 13207

Symbol: Ddx5

Ensembl ID: ENSMUSG00000020719

Description: DEAD box helicase 5

Associated with

Esr-mediated signaling
(R-MMU-8939211)
Estrogen-dependent gene expression
(R-MMU-9018519)
Metabolism of proteins
(R-MMU-392499)
Metabolism of rna
(R-MMU-8953854)
Mrna splicing
(R-MMU-72172)
Mrna splicing - major pathway
(R-MMU-72163)
Post-translational protein modification
(R-MMU-597592)
Processing of capped intron-containing pre-mrna
(R-MMU-72203)
Signaling by nuclear receptors
(R-MMU-9006931)
Signal transduction
(R-MMU-162582)
Sumo e3 ligases sumoylate target proteins
(R-MMU-3108232)
Sumoylation
(R-MMU-2990846)
Sumoylation of transcription cofactors
(R-MMU-3899300)
Alternative mrna splicing, via spliceosome
(GO:0000380)
Androgen receptor signaling pathway
(GO:0030521)
Atp binding
(GO:0005524)
Bmp signaling pathway
(GO:0030509)
Calcium-dependent protein binding
(GO:0048306)
Calmodulin binding
(GO:0005516)
Catalytic step 2 spliceosome
(GO:0071013)
Circadian rhythm
(GO:0007623)
Cytoplasm
(GO:0005737)
Enzyme binding
(GO:0019899)
Epithelial to mesenchymal transition
(GO:0001837)
Helicase activity
(GO:0004386)
Hydrolase activity
(GO:0016787)
Intracellular estrogen receptor signaling pathway
(GO:0030520)
Intrinsic apoptotic signaling pathway by p53 class mediator
(GO:0072332)
Mh2 domain binding
(GO:0035500)
Mirna transcription
(GO:0061614)
Mrna 3'-utr binding
(GO:0003730)
Mrna processing
(GO:0006397)
Mrna transcription
(GO:0009299)
Myoblast differentiation
(GO:0045445)
Negative regulation of transcription by rna polymerase ii
(GO:0000122)
Nuclear-transcribed mrna catabolic process
(GO:0000956)
Nuclear androgen receptor binding
(GO:0050681)
Nuclear speck
(GO:0016607)
Nucleic acid binding
(GO:0003676)
Nucleolus
(GO:0005730)
Nucleoplasm
(GO:0005654)
Nucleotide binding
(GO:0000166)
Nucleus
(GO:0005634)
Positive regulation of dna-templated transcription
(GO:0045893)
Positive regulation of dna damage response, signal transduction by p53 class mediator
(GO:0043517)
Pre-mrna binding
(GO:0036002)
Primary mirna binding
(GO:0070878)
Primary mirna processing
(GO:0031053)
Promoter-specific chromatin binding
(GO:1990841)
Protein binding
(GO:0005515)
Protein import into nucleus
(GO:0006606)
R-smad binding
(GO:0070412)
Regulation of alternative mrna splicing, via spliceosome
(GO:0000381)
Regulation of androgen receptor signaling pathway
(GO:0060765)
Regulation of osteoblast differentiation
(GO:0045667)
Regulation of skeletal muscle cell differentiation
(GO:2001014)
Regulation of transcription by rna polymerase ii
(GO:0006357)
Regulation of viral genome replication
(GO:0045069)
Rhythmic process
(GO:0048511)
Ribonucleoprotein complex
(GO:1990904)
Ribonucleoprotein complex binding
(GO:0043021)
Rna binding
(GO:0003723)
Rna helicase activity
(GO:0003724)
Rna splicing
(GO:0008380)
Smad binding
(GO:0046332)
Spliceosomal complex
(GO:0005681)
Transcription coregulator activity
(GO:0003712)

Other Information

Proteins

Q8BTS0_MOUSE

Genular Protein ID: 1300147603

Symbol: Q8BTS0_MOUSE

Name: N/A

UniProtKB Accession Codes:

Q8BTS0 Q6P5F8

Database IDs:

Citations:

PubMed ID: 10349636

Title: High-efficiency full-length cDNA cloning.

PubMed ID: 10349636

DOI: 10.1016/S0076-6879(99)03004-9

PubMed ID: 11042159

Title: Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.

PubMed ID: 11042159

DOI: 10.1101/gr.145100

PubMed ID: 11076861

Title: RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.

PubMed ID: 11076861

DOI: 10.1101/gr.152600

PubMed ID: 11217851

Title: Functional annotation of a full-length mouse cDNA collection.

PubMed ID: 11217851

DOI: 10.1038/35055500

PubMed ID: 12466851

Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.

PubMed ID: 12466851

DOI: 10.1038/nature01266

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 16141073

Title: Antisense Transcription in the Mammalian Transcriptome.

PubMed ID: 16141073

DOI: 10.1126/science.1112009

PubMed ID: 19468303

Title: Lineage-specific biology revealed by a finished genome assembly of the mouse.

PubMed ID: 19468303

DOI: 10.1371/journal.pbio.1000112

PubMed ID: 21183079

Title: A tissue-specific atlas of mouse protein phosphorylation and expression.

PubMed ID: 21183079

DOI: 10.1016/j.cell.2010.12.001

PubMed ID: 23806337

Title: SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways.

PubMed ID: 23806337

DOI: 10.1016/j.molcel.2013.06.001

Sequence Information:

Length: 615
Mass: 69266
Checksum: EEEE5B5F5A71BF69
Sequence:

MSSYSSDRDR GRDRGFGAPR FGGSRTGPLS GKKFGNPGEK LVKKKWNLDE LPKFEKNFYQ 
EHPDLARRTA QEVDTYRRSK EITVRGHNCP KPVLNFYEAN FPANVMDVIA RQNFTEPTAI 
QAQGWPVALS GLDMVGVAQT GSGKTLSYLL PAIVHINHQP FLERGDGPIC LVLAPTRELA 
QQVQQVAAEY CRACRLKSTC IYGGAPKGPQ IRDLERGVEI CIATPGRLID FLECGKTNLR 
RTTYLVLDEA DRMLDMGFEP QIRKIVDQIR PDRQTLMWSA TWPKEVRQLA EDFLKDYIHI 
NIGALELSAN HNILQIVDVC HDVEKDEKLI RLMEEIMSEK ENKTIVFVET KRRCDELTRK 
MRRDGWPAMG IHGDKSQQER DWVLNEFKHG KAPILIATDV ASRGLDVEDV KFVINYDYPN 
SSEDYIHRIG RTARSTKTGT AYTFFTPNNI KQVSDLISVL REANQAINPK LLQLVEDRGS 
GRSRGRGGMK DDRRDRYSAG KRGGFNTFRD RENYDRGYSN LLKRDFGAKT QNGVYSAANY 
TNGSFGSNFV SAGIQTSFRT GNPTGTYQNG YDSTQQYGSN VANMHNGMNQ QAYAYPATAA 
AAPMIGYPMP TGYSQ

The gene details are incomplete or unavailable at the moment.

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.

Details for: Ddx5

Associated with

Other Information

High-efficiency full-length cDNA cloning. PubMed ID: 10349636

Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. PubMed ID: 11042159

RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. PubMed ID: 11076861

Functional annotation of a full-length mouse cDNA collection. PubMed ID: 11217851

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. PubMed ID: 12466851

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). PubMed ID: 15489334

Antisense Transcription in the Mammalian Transcriptome. PubMed ID: 16141073

Lineage-specific biology revealed by a finished genome assembly of the mouse. PubMed ID: 19468303

A tissue-specific atlas of mouse protein phosphorylation and expression. PubMed ID: 21183079

SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways. PubMed ID: 23806337