Details for: ABCA2

Gene ID: 20

Symbol: ABCA2

Ensembl ID: ENSG00000107331

Description: ATP binding cassette subfamily A member 2

Associated with

Cells (max top 100)

(Marker Score score is uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: oligodendrocyte (CL0000128)
    Fold Change: 3.76
    Marker Score: 9009
  • Cell Name: pyramidal neuron (CL0000598)
    Fold Change: 1.3
    Marker Score: 2184
  • Cell Name: L6b glutamatergic cortical neuron (CL4023038)
    Fold Change: 1.18
    Marker Score: 10120
  • Cell Name: corticothalamic-projecting glutamatergic cortical neuron (CL4023013)
    Fold Change: 1.15
    Marker Score: 10946
  • Cell Name: kidney loop of Henle thick ascending limb epithelial cell (CL1001106)
    Fold Change: 1.13
    Marker Score: 3030
  • Cell Name: L2/3-6 intratelencephalic projecting glutamatergic neuron (CL4023040)
    Fold Change: 1.12
    Marker Score: 69096
  • Cell Name: near-projecting glutamatergic cortical neuron (CL4023012)
    Fold Change: 1.1
    Marker Score: 10314
  • Cell Name: L5 extratelencephalic projecting glutamatergic cortical neuron (CL4023041)
    Fold Change: 1.09
    Marker Score: 1679
  • Cell Name: endocrine cell (CL0000163)
    Fold Change: 1.05
    Marker Score: 543.5
  • Cell Name: dopaminergic neuron (CL0000700)
    Fold Change: 1.04
    Marker Score: 10738
  • Cell Name: mature astrocyte (CL0002627)
    Fold Change: 1.03
    Marker Score: 679
  • Cell Name: cerebral cortex GABAergic interneuron (CL0010011)
    Fold Change: 1
    Marker Score: 71780.5
  • Cell Name: forebrain radial glial cell (CL0013000)
    Fold Change: 1
    Marker Score: 48005
  • Cell Name: kidney proximal straight tubule epithelial cell (CL1000839)
    Fold Change: 0.99
    Marker Score: 2336
  • Cell Name: absorptive cell (CL0000212)
    Fold Change: 0.98
    Marker Score: 30404
  • Cell Name: vip GABAergic cortical interneuron (CL4023016)
    Fold Change: 0.97
    Marker Score: 36817
  • Cell Name: tuft cell of colon (CL0009041)
    Fold Change: 0.95
    Marker Score: 491
  • Cell Name: intestinal crypt stem cell of colon (CL0009043)
    Fold Change: 0.95
    Marker Score: 2409
  • Cell Name: pvalb GABAergic cortical interneuron (CL4023018)
    Fold Change: 0.94
    Marker Score: 34746
  • Cell Name: BEST4+ intestinal epithelial cell, human (CL4030026)
    Fold Change: 0.94
    Marker Score: 444
  • Cell Name: neuron (CL0000540)
    Fold Change: 0.92
    Marker Score: 3766
  • Cell Name: cerebral cortex neuron (CL0010012)
    Fold Change: 0.91
    Marker Score: 2610
  • Cell Name: abnormal cell (CL0001061)
    Fold Change: 0.91
    Marker Score: 2729
  • Cell Name: caudal ganglionic eminence derived GABAergic cortical interneuron (CL4023070)
    Fold Change: 0.91
    Marker Score: 3506
  • Cell Name: transit amplifying cell (CL0009010)
    Fold Change: 0.9
    Marker Score: 5124
  • Cell Name: type A enteroendocrine cell (CL0002067)
    Fold Change: 0.89
    Marker Score: 360
  • Cell Name: astrocyte of the cerebral cortex (CL0002605)
    Fold Change: 0.87
    Marker Score: 18579
  • Cell Name: neoplastic cell (CL0001063)
    Fold Change: 0.87
    Marker Score: 5270
  • Cell Name: epithelial cell of small intestine (CL0002254)
    Fold Change: 0.87
    Marker Score: 312
  • Cell Name: sst GABAergic cortical interneuron (CL4023017)
    Fold Change: 0.83
    Marker Score: 16595
  • Cell Name: sncg GABAergic cortical interneuron (CL4023015)
    Fold Change: 0.83
    Marker Score: 6340
  • Cell Name: chandelier pvalb GABAergic cortical interneuron (CL4023036)
    Fold Change: 0.79
    Marker Score: 3288
  • Cell Name: astrocyte (CL0000127)
    Fold Change: 0.78
    Marker Score: 680
  • Cell Name: kidney distal convoluted tubule epithelial cell (CL1000849)
    Fold Change: 0.78
    Marker Score: 829
  • Cell Name: intestinal epithelial cell (CL0002563)
    Fold Change: 0.77
    Marker Score: 1254
  • Cell Name: early T lineage precursor (CL0002425)
    Fold Change: 0.76
    Marker Score: 583
  • Cell Name: lymphoid lineage restricted progenitor cell (CL0000838)
    Fold Change: 0.76
    Marker Score: 456
  • Cell Name: enterocyte of epithelium of small intestine (CL1000334)
    Fold Change: 0.76
    Marker Score: 3174.5
  • Cell Name: OFF retinal ganglion cell (CL4023033)
    Fold Change: 0.75
    Marker Score: 313
  • Cell Name: Cajal-Retzius cell (CL0000695)
    Fold Change: 0.74
    Marker Score: 381
  • Cell Name: lamp5 GABAergic cortical interneuron (CL4023011)
    Fold Change: 0.73
    Marker Score: 10903
  • Cell Name: brush cell (CL0002204)
    Fold Change: 0.72
    Marker Score: 655
  • Cell Name: inhibitory interneuron (CL0000498)
    Fold Change: 0.72
    Marker Score: 3318
  • Cell Name: cortical thymic epithelial cell (CL0002364)
    Fold Change: 0.72
    Marker Score: 2654
  • Cell Name: small intestine goblet cell (CL1000495)
    Fold Change: 0.72
    Marker Score: 287
  • Cell Name: cardiac muscle myoblast (CL0000513)
    Fold Change: 0.71
    Marker Score: 11119
  • Cell Name: immature innate lymphoid cell (CL0001082)
    Fold Change: 0.7
    Marker Score: 1417
  • Cell Name: neutrophil progenitor cell (CL0000834)
    Fold Change: 0.67
    Marker Score: 171
  • Cell Name: precursor B cell (CL0000817)
    Fold Change: 0.65
    Marker Score: 431
  • Cell Name: microglial cell (CL0000129)
    Fold Change: 0.63
    Marker Score: 1140
  • Cell Name: CD8-positive, alpha-beta cytokine secreting effector T cell (CL0000908)
    Fold Change: 0.62
    Marker Score: 266
  • Cell Name: sympathetic neuron (CL0011103)
    Fold Change: 0.59
    Marker Score: 196
  • Cell Name: common lymphoid progenitor (CL0000051)
    Fold Change: 0.59
    Marker Score: 400
  • Cell Name: ON retinal ganglion cell (CL4023032)
    Fold Change: 0.56
    Marker Score: 152
  • Cell Name: mononuclear cell (CL0000842)
    Fold Change: 0.55
    Marker Score: 178
  • Cell Name: intestinal enteroendocrine cell (CL1001516)
    Fold Change: 0.54
    Marker Score: 432
  • Cell Name: kidney collecting duct principal cell (CL1001431)
    Fold Change: 0.53
    Marker Score: 1348
  • Cell Name: P/D1 enteroendocrine cell (CL0002268)
    Fold Change: 0.53
    Marker Score: 198
  • Cell Name: secondary lens fiber (CL0002225)
    Fold Change: 0.5
    Marker Score: 292.5
  • Cell Name: kidney loop of Henle thin ascending limb epithelial cell (CL1001107)
    Fold Change: 0.49
    Marker Score: 502
  • Cell Name: A2 amacrine cell (CL0004219)
    Fold Change: 0.47
    Marker Score: 150.5
  • Cell Name: kidney collecting duct intercalated cell (CL1001432)
    Fold Change: 0.46
    Marker Score: 762
  • Cell Name: oligodendrocyte precursor cell (CL0002453)
    Fold Change: 0.45
    Marker Score: 562
  • Cell Name: lymphocyte (CL0000542)
    Fold Change: 0.45
    Marker Score: 225
  • Cell Name: kidney capillary endothelial cell (CL1000892)
    Fold Change: 0.44
    Marker Score: 138
  • Cell Name: neural cell (CL0002319)
    Fold Change: 0.42
    Marker Score: 204
  • Cell Name: corneal endothelial cell (CL0000132)
    Fold Change: 0.42
    Marker Score: 244
  • Cell Name: cerebellar granule cell precursor (CL0002362)
    Fold Change: 0.42
    Marker Score: 234
  • Cell Name: mature gamma-delta T cell (CL0000800)
    Fold Change: 0.41
    Marker Score: 1299
  • Cell Name: CD8-positive, alpha-beta memory T cell (CL0000909)
    Fold Change: 0.41
    Marker Score: 348
  • Cell Name: decidual natural killer cell, human (CL0002343)
    Fold Change: 0.41
    Marker Score: 1131
  • Cell Name: cholangiocyte (CL1000488)
    Fold Change: 0.41
    Marker Score: 153
  • Cell Name: GABAergic interneuron (CL0011005)
    Fold Change: 0.4
    Marker Score: 155
  • Cell Name: chromaffin cell (CL0000166)
    Fold Change: 0.4
    Marker Score: 566
  • Cell Name: fibroblast of cardiac tissue (CL0002548)
    Fold Change: 0.4
    Marker Score: 2387
  • Cell Name: intestinal crypt stem cell of small intestine (CL0009017)
    Fold Change: 0.4
    Marker Score: 268.5
  • Cell Name: epithelial cell of glomerular capsule (CL1000450)
    Fold Change: 0.4
    Marker Score: 101
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: 0.39
    Marker Score: 392
  • Cell Name: smooth muscle myoblast (CL0000514)
    Fold Change: 0.39
    Marker Score: 187
  • Cell Name: ciliated columnar cell of tracheobronchial tree (CL0002145)
    Fold Change: 0.38
    Marker Score: 3322
  • Cell Name: Sertoli cell (CL0000216)
    Fold Change: 0.38
    Marker Score: 2259
  • Cell Name: kidney connecting tubule epithelial cell (CL1000768)
    Fold Change: 0.38
    Marker Score: 538
  • Cell Name: CD56-positive, CD161-positive immature natural killer cell, human (CL0002338)
    Fold Change: 0.38
    Marker Score: 125
  • Cell Name: intestinal tuft cell (CL0019032)
    Fold Change: 0.38
    Marker Score: 120
  • Cell Name: mature microglial cell (CL0002629)
    Fold Change: 0.38
    Marker Score: 136
  • Cell Name: pancreatic A cell (CL0000171)
    Fold Change: 0.37
    Marker Score: 367
  • Cell Name: ciliated cell (CL0000064)
    Fold Change: 0.37
    Marker Score: 1277
  • Cell Name: nephron tubule epithelial cell (CL1000494)
    Fold Change: 0.37
    Marker Score: 87
  • Cell Name: GABAergic neuron (CL0000617)
    Fold Change: 0.37
    Marker Score: 1531
  • Cell Name: endocardial cell (CL0002350)
    Fold Change: 0.37
    Marker Score: 207
  • Cell Name: CD16-negative, CD56-bright natural killer cell, human (CL0000938)
    Fold Change: 0.35
    Marker Score: 288
  • Cell Name: subcutaneous fat cell (CL0002521)
    Fold Change: 0.35
    Marker Score: 128
  • Cell Name: brainstem motor neuron (CL2000047)
    Fold Change: 0.35
    Marker Score: 202
  • Cell Name: pulmonary interstitial fibroblast (CL0002241)
    Fold Change: 0.34
    Marker Score: 271
  • Cell Name: enteroendocrine cell (CL0000164)
    Fold Change: 0.34
    Marker Score: 175
  • Cell Name: PP cell (CL0000696)
    Fold Change: 0.34
    Marker Score: 76
  • Cell Name: vascular leptomeningeal cell (CL4023051)
    Fold Change: 0.33
    Marker Score: 385
  • Cell Name: epicardial adipocyte (CL1000309)
    Fold Change: 0.33
    Marker Score: 161
  • Cell Name: connective tissue cell (CL0002320)
    Fold Change: 0.33
    Marker Score: 86
  • Cell Name: lens fiber cell (CL0011004)
    Fold Change: 0.33
    Marker Score: 104

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Other Information

**Key characteristics:** * ABCA2 is a type of ATP-binding cassette protein. * It is expressed in a variety of cell types. * It is involved in the transport of molecules between the cell and the extracellular environment. * It is a significant protein in the brain. **Pathways and functions:** * ABCA2 is involved in a variety of cellular processes, including: * Lipid metabolism * Sphingomyelin metabolic process * Transport of small molecules * Immune response * It is involved in the regulation of neuronal function and development. **Clinical significance:** * Mutations in ABCA2 have been linked to a number of neurological disorders, including: * Cerebrovascular disease * Neurodegenerative diseases * Diabetes * ABCA2 is a promising target for the treatment of neurological disorders.

Genular Protein ID: 111809873

Symbol: ABCA2_HUMAN

Name: ATP-binding cassette transporter 2

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 11178988

Title: Complete coding sequence, promoter region, and genomic structure of the human ABCA2 gene and evidence for sterol-dependent regulation in macrophages.

PubMed ID: 11178988

DOI: 10.1006/bbrc.2001.4305

PubMed ID: 11309290

Title: Cloning and characterization of human adenosine 5'-triphosphate-binding cassette, sub-family A, transporter 2.

PubMed ID: 11309290

PubMed ID: 15164053

Title: DNA sequence and analysis of human chromosome 9.

PubMed ID: 15164053

DOI: 10.1038/nature02465

PubMed ID: 10470851

Title: Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro.

PubMed ID: 10470851

DOI: 10.1093/dnares/6.3.197

PubMed ID: 12168954

Title: Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones.

PubMed ID: 12168954

DOI: 10.1093/dnares/9.3.99

PubMed ID: 15093135

Title: Identification of a novel first exon of the human ABCA2 transporter gene encoding a unique N-terminus.

PubMed ID: 15093135

DOI: 10.1016/j.bbaexp.2004.01.007

PubMed ID: 15238223

Title: Human ATP-binding cassette transporter-2 (ABCA2) positively regulates low-density lipoprotein receptor expression and negatively regulates cholesterol esterification in Chinese hamster ovary cells.

PubMed ID: 15238223

DOI: 10.1016/j.bbalip.2004.04.009

PubMed ID: 15999530

Title: Characterization of the ATPase activity of human ATP-binding cassette transporter-2 (ABCA2).

PubMed ID: 15999530

PubMed ID: 17081983

Title: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

PubMed ID: 17081983

DOI: 10.1016/j.cell.2006.09.026

PubMed ID: 18669648

Title: A quantitative atlas of mitotic phosphorylation.

PubMed ID: 18669648

DOI: 10.1073/pnas.0805139105

PubMed ID: 21810484

Title: The ATP-binding cassette transporter-2 (ABCA2) regulates cholesterol homeostasis and low-density lipoprotein receptor metabolism in N2a neuroblastoma cells.

PubMed ID: 21810484

DOI: 10.1016/j.bbalip.2011.07.010

PubMed ID: 22086926

Title: Down-regulation of the ATP-binding cassette transporter 2 (Abca2) reduces amyloid-beta production by altering Nicastrin maturation and intracellular localization.

PubMed ID: 22086926

DOI: 10.1074/jbc.m111.288258

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 24201375

Title: The ATP-binding cassette transporter-2 (ABCA2) regulates esterification of plasma membrane cholesterol by modulation of sphingolipid metabolism.

PubMed ID: 24201375

DOI: 10.1016/j.bbalip.2013.10.019

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 26510981

Title: The ATP-Binding Cassette Transporter-2 (ABCA2) Overexpression Modulates Sphingosine Levels and Transcription of the Amyloid Precursor Protein (APP) Gene.

PubMed ID: 26510981

DOI: 10.2174/156720501209151019105834

PubMed ID: 26797129

Title: Substrate specificity of the HEMK2 protein glutamine methyltransferase and identification of novel substrates.

PubMed ID: 26797129

DOI: 10.1074/jbc.m115.711952

PubMed ID: 29302074

Title: Genetics of intellectual disability in consanguineous families.

PubMed ID: 29302074

DOI: 10.1038/s41380-017-0012-2

PubMed ID: 30237576

Title: Autozygome and high throughput confirmation of disease genes candidacy.

PubMed ID: 30237576

DOI: 10.1038/s41436-018-0138-x

Sequence Information:

  • Length: 2435
  • Mass: 269833
  • Checksum: D707CC83F30BE2BF
  • Sequence:
  • MGFLHQLQLL LWKNVTLKRR SPWVLAFEIF IPLVLFFILL GLRQKKPTIS VKEAFYTAAP 
    LTSAGILPVM QSLCPDGQRD EFGFLQYANS TVTQLLERLD RVVEEGNLFD PARPSLGSEL 
    EALRQHLEAL SAGPGTSGSH LDRSTVSSFS LDSVARNPQE LWRFLTQNLS LPNSTAQALL 
    AARVDPPEVY HLLFGPSSAL DSQSGLHKGQ EPWSRLGGNP LFRMEELLLA PALLEQLTCT 
    PGSGELGRIL TVPESQKGAL QGYRDAVCSG QAAARARRFS GLSAELRNQL DVAKVSQQLG 
    LDAPNGSDSS PQAPPPRRLQ ALLGDLLDAQ KVLQDVDVLS ALALLLPQGA CTGRTPGPPA 
    SGAGGAANGT GAGAVMGPNA TAEEGAPSAA ALATPDTLQG QCSAFVQLWA GLQPILCGNN 
    RTIEPEALRR GNMSSLGFTS KEQRNLGLLV HLMTSNPKIL YAPAGSEVDR VILKANETFA 
    FVGNVTHYAQ VWLNISAEIR SFLEQGRLQQ HLRWLQQYVA ELRLHPEALN LSLDELPPAL 
    RQDNFSLPSG MALLQQLDTI DNAACGWIQF MSKVSVDIFK GFPDEESIVN YTLNQAYQDN 
    VTVFASVIFQ TRKDGSLPPH VHYKIRQNSS FTEKTNEIRR AYWRPGPNTG GRFYFLYGFV 
    WIQDMMERAI IDTFVGHDVV EPGSYVQMFP YPCYTRDDFL FVIEHMMPLC MVISWVYSVA 
    MTIQHIVAEK EHRLKEVMKT MGLNNAVHWV AWFITGFVQL SISVTALTAI LKYGQVLMHS 
    HVVIIWLFLA VYAVATIMFC FLVSVLYSKA KLASACGGII YFLSYVPYMY VAIREEVAHD 
    KITAFEKCIA SLMSTTAFGL GSKYFALYEV AGVGIQWHTF SQSPVEGDDF NLLLAVTMLM 
    VDAVVYGILT WYIEAVHPGM YGLPRPWYFP LQKSYWLGSG RTEAWEWSWP WARTPRLSVM 
    EEDQACAMES RRFEETRGME EEPTHLPLVV CVDKLTKVYK DDKKLALNKL SLNLYENQVV 
    SFLGHNGAGK TTTMSILTGL FPPTSGSATI YGHDIRTEMD EIRKNLGMCP QHNVLFDRLT 
    VEEHLWFYSR LKSMAQEEIR REMDKMIEDL ELSNKRHSLV QTLSGGMKRK LSVAIAFVGG 
    SRAIILDEPT AGVDPYARRA IWDLILKYKP GRTILLSTHH MDEADLLGDR IAIISHGKLK 
    CCGSPLFLKG TYGDGYRLTL VKRPAEPGGP QEPGLASSPP GRAPLSSCSE LQVSQFIRKH 
    VASCLLVSDT STELSYILPS EAAKKGAFER LFQHLERSLD ALHLSSFGLM DTTLEEVFLK 
    VSEEDQSLEN SEADVKESRK DVLPGAEGPA SGEGHAGNLA RCSELTQSQA SLQSASSVGS 
    ARGDEGAGYT DVYGDYRPLF DNPQDPDNVS LQEVEAEALS RVGQGSRKLD GGWLKVRQFH 
    GLLVKRFHCA RRNSKALFSQ ILLPAFFVCV AMTVALSVPE IGDLPPLVLS PSQYHNYTQP 
    RGNFIPYANE ERREYRLRLS PDASPQQLVS TFRLPSGVGA TCVLKSPANG SLGPTLNLSS 
    GESRLLAARF FDSMCLESFT QGLPLSNFVP PPPSPAPSDS PASPDEDLQA WNVSLPPTAG 
    PEMWTSAPSL PRLVREPVRC TCSAQGTGFS CPSSVGGHPP QMRVVTGDIL TDITGHNVSE 
    YLLFTSDRFR LHRYGAITFG NVLKSIPASF GTRAPPMVRK IAVRRAAQVF YNNKGYHSMP 
    TYLNSLNNAI LRANLPKSKG NPAAYGITVT NHPMNKTSAS LSLDYLLQGT DVVIAIFIIV 
    AMSFVPASFV VFLVAEKSTK AKHLQFVSGC NPIIYWLANY VWDMLNYLVP ATCCVIILFV 
    FDLPAYTSPT NFPAVLSLFL LYGWSITPIM YPASFWFEVP SSAYVFLIVI NLFIGITATV 
    ATFLLQLFEH DKDLKVVNSY LKSCFLIFPN YNLGHGLMEM AYNEYINEYY AKIGQFDKMK 
    SPFEWDIVTR GLVAMAVEGV VGFLLTIMCQ YNFLRRPQRM PVSTKPVEDD VDVASERQRV 
    LRGDADNDMV KIENLTKVYK SRKIGRILAV DRLCLGVRPG ECFGLLGVNG AGKTSTFKML 
    TGDESTTGGE AFVNGHSVLK ELLQVQQSLG YCPQCDALFD ELTAREHLQL YTRLRGISWK 
    DEARVVKWAL EKLELTKYAD KPAGTYSGGN KRKLSTAIAL IGYPAFIFLD EPTTGMDPKA 
    RRFLWNLILD LIKTGRSVVL TSHSMEECEA LCTRLAIMVN GRLRCLGSIQ HLKNRFGDGY 
    MITVRTKSSQ SVKDVVRFFN RNFPEAMLKE RHHTKVQYQL KSEHISLAQV FSKMEQVSGV 
    LGIEDYSVSQ TTLDNVFVNF AKKQSDNLEQ QETEPPSALQ SPLGCLLSLL RPRSAPTELR 
    ALVADEPEDL DTEDEGLISF EEERAQLSFN TDTLC

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. For the full schema, download it here.