Genular: Defining Cellular Identity and Function

Details for: Slc1a6

Gene ID: 20513

Symbol: Slc1a6

Ensembl ID: ENSMUSG00000005357

Description: solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6

Associated with

Glutamate neurotransmitter release cycle
(R-MMU-210500)
Neuronal system
(R-MMU-112316)
Neurotransmitter release cycle
(R-MMU-112310)
Slc-mediated transmembrane transport
(R-MMU-425407)
Transmission across chemical synapses
(R-MMU-112315)
Transport of inorganic cations/anions and amino acids/oligopeptides
(R-MMU-425393)
Transport of small molecules
(R-MMU-382551)
Amino acid transport
(GO:0006865)
Establishment of localization in cell
(GO:0051649)
Glutamate:sodium symporter activity
(GO:0015501)
Glutamatergic synapse
(GO:0098978)
Golgi apparatus
(GO:0005794)
High-affinity l-glutamate transmembrane transporter activity
(GO:0005314)
Intermediate filament cytoskeleton
(GO:0045111)
L-aspartate import across plasma membrane
(GO:0140009)
L-aspartate transmembrane transporter activity
(GO:0015183)
L-glutamate import across plasma membrane
(GO:0098712)
L-glutamate transmembrane transport
(GO:0015813)
L-glutamate transmembrane transporter activity
(GO:0005313)
Membrane
(GO:0016020)
Membrane protein complex
(GO:0098796)
Metal ion binding
(GO:0046872)
Monoatomic anion transmembrane transporter activity
(GO:0008509)
Neurotransmitter uptake
(GO:0001504)
Neutral l-amino acid transmembrane transporter activity
(GO:0015175)
Parallel fiber to purkinje cell synapse
(GO:0098688)
Plasma membrane
(GO:0005886)
Postsynaptic membrane
(GO:0045211)
Presynaptic membrane
(GO:0042734)
Regulation of membrane potential
(GO:0042391)
Symporter activity
(GO:0015293)

Other Information

Proteins

Excitatory amino acid transporter 4
Q3TXM3_MOUSE

Genular Protein ID: 2114443792

Symbol: EAA4_MOUSE

Name: Excitatory amino acid transporter 4

UniProtKB Accession Codes:

O35544

Database IDs:

Citations:

PubMed ID: 9379843

Title: Structure and functional expression of the cloned mouse neuronal high-affinity glutamate transporter.

PubMed ID: 9379843

DOI: 10.1016/s0169-328x(97)00169-1

PubMed ID: 21183079

Title: A tissue-specific atlas of mouse protein phosphorylation and expression.

PubMed ID: 21183079

DOI: 10.1016/j.cell.2010.12.001

Sequence Information:

Length: 561
Mass: 60784
Checksum: CCFE3FD499D4CBBB
Sequence:

MSSHGNSLFL RESGAGGGCL QGLQDSLQQR ALRTRLRLQT MTREHVRRFL RRNAFILLTV 
SAVIIGVSLA FALRPYQLSY RQIKYFSFPG ELLMRMLQML VLPLIVSSLV TGMASLDNKA 
TGRMGMRAAV YYMVTTVIAV FIGILMVTII HPGKGSKEGL HREGRIETVP TADAFMDLVR 
NMFPPNLVEA CFKQFKTQYS TRVVTRTIVR TDNGSELGAS MSPTSSVENE TSILENVTRA 
LGTLQEVISF EETVPVPGSA NGINALGLVV FSVAFGLVIG GMKHKGRVLR DFFDSLNEAI 
MRLVGIIIWY APVGILFLIA GKILEMEDMA VLGGQLGMYT LTVIVGLFLH AGGVLPLIYF 
LVTHRNPFPF IGGMLQALIT AMGTSSSSAT LPITFRCLEE GLGVDRRITR FVLPVGATVN 
MDGTALYEAL AAIFIAQVNN YELNLGQITT ISITATAASV GAAGIPQAGL VTMVIVLTSV 
GLPTEDITLI IAVDWFLDRL RTMTNVLGDS IGAAVIEHLS QRELELQEAE LTLPSLGKPY 
KSLMAQEKGA SRGRGGNESV M

Genular Protein ID: 1484686469

Symbol: Q3TXM3_MOUSE

Name: N/A

UniProtKB Accession Codes:

Q3TXM3

Database IDs:

Citations:

PubMed ID: 10349636

Title: High-efficiency full-length cDNA cloning.

PubMed ID: 10349636

DOI: 10.1016/S0076-6879(99)03004-9

PubMed ID: 11042159

Title: Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.

PubMed ID: 11042159

DOI: 10.1101/gr.145100

PubMed ID: 11076861

Title: RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.

PubMed ID: 11076861

DOI: 10.1101/gr.152600

PubMed ID: 11217851

Title: Functional annotation of a full-length mouse cDNA collection.

PubMed ID: 11217851

DOI: 10.1038/35055500

PubMed ID: 12466851

Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.

PubMed ID: 12466851

DOI: 10.1038/nature01266

PubMed ID: 16141073

Title: Antisense Transcription in the Mammalian Transcriptome.

PubMed ID: 16141073

DOI: 10.1126/science.1112009

Sequence Information:

Length: 561
Mass: 60774
Checksum: C8F761C6C496A950
Sequence:

MSSHGNSLFL RESGAGGGCL QGLQDSLQQR ALRTRLRLQT MTREHVRRFL RRNAFILLTV 
SAVIIGVSLA FALRPYQLSY RQIKYFSFPG ELLMRMLQML VLPLIVSSLV TGMASLDNKA 
TGRMGMRAAV YYMVTTVIAV FIGILMVTII HPGKGSKEGL HREGRIETVP TADAFMDLVR 
NMFPPNLVEA CFKQFKTQYS TRVVTRTIVR TDNGSELGAS MSPTSSVENE TSILENVTRA 
LGTLQEVISF EETVPVPGSA NGINALGLVV FSAAFGLVIG GMKHKGRVLR DFFDSLNEAI 
MRLVGIIIWY APVGILFLIA GKILEMEDMA VLGGQLGMYT LTVIVGLFLH AGGVLPLIYF 
LVTHRNPFPF IGGMLQALIT AMGTSSSSAT LPITFRCLEE GLGVDRRITR FVLPVGATVN 
MDGTALYEAL AAMFIAQVNN YELNLGQITT ISITATAASV GAAGIPQAGL VTMVIVLTSV 
GLPTEDITLI IAVDWFLDRL RTMTNVLGDS IGAAVIEHLS QRELELQEAE LTLPSLGKPY 
KSLMAQEKGA SRGRGGNESV M

The gene details are incomplete or unavailable at the moment.

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.

Details for: Slc1a6

Associated with

Other Information

Structure and functional expression of the cloned mouse neuronal high-affinity glutamate transporter. PubMed ID: 9379843

A tissue-specific atlas of mouse protein phosphorylation and expression. PubMed ID: 21183079

High-efficiency full-length cDNA cloning. PubMed ID: 10349636

Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. PubMed ID: 11042159

RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. PubMed ID: 11076861

Functional annotation of a full-length mouse cDNA collection. PubMed ID: 11217851

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. PubMed ID: 12466851

Antisense Transcription in the Mammalian Transcriptome. PubMed ID: 16141073