Details for: ATG4B

Gene ID: 23192

Symbol: ATG4B

Ensembl ID: ENSG00000168397

Description: autophagy related 4B cysteine peptidase

Associated with

Other Information

Genular Protein ID: 3322643845

Symbol: ATG4B_HUMAN

Name: AUT-like 1 cysteine endopeptidase

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 12446702

Title: Human autophagins, a family of cysteine proteinases potentially implicated in cell degradation by autophagy.

PubMed ID: 12446702

DOI: 10.1074/jbc.m208247200

PubMed ID: 30808002

Title:

PubMed ID: 30808002

DOI: 10.1074/jbc.w118.007325

PubMed ID: 15169837

Title: LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation.

PubMed ID: 15169837

DOI: 10.1242/jcs.01131

PubMed ID: 10231032

Title: Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro.

PubMed ID: 10231032

DOI: 10.1093/dnares/6.1.63

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 17974005

Title: The full-ORF clone resource of the German cDNA consortium.

PubMed ID: 17974005

DOI: 10.1186/1471-2164-8-399

PubMed ID: 15815621

Title: Generation and annotation of the DNA sequences of human chromosomes 2 and 4.

PubMed ID: 15815621

DOI: 10.1038/nature03466

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 15187094

Title: HsAtg4B/HsApg4B/autophagin-1 cleaves the carboxyl termini of three human Atg8 homologues and delipidates microtubule-associated protein light chain 3- and GABAA receptor-associated protein-phospholipid conjugates.

PubMed ID: 15187094

DOI: 10.1074/jbc.m401461200

PubMed ID: 17081983

Title: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

PubMed ID: 17081983

DOI: 10.1016/j.cell.2006.09.026

PubMed ID: 17347651

Title: Reactive oxygen species are essential for autophagy and specifically regulate the activity of Atg4.

PubMed ID: 17347651

DOI: 10.1038/sj.emboj.7601623

PubMed ID: 19413330

Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.

PubMed ID: 19413330

DOI: 10.1021/ac9004309

PubMed ID: 19369195

Title: Large-scale proteomics analysis of the human kinome.

PubMed ID: 19369195

DOI: 10.1074/mcp.m800588-mcp200

PubMed ID: 19690332

Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.

PubMed ID: 19690332

DOI: 10.1126/scisignal.2000007

PubMed ID: 20818167

Title: Synthetic substrates for measuring activity of autophagy proteases: autophagins (Atg4).

PubMed ID: 20818167

DOI: 10.4161/auto.6.7.13075

PubMed ID: 20068231

Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.

PubMed ID: 20068231

DOI: 10.1126/scisignal.2000475

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 21177865

Title: Kinetics comparisons of mammalian Atg4 homologues indicate selective preferences toward diverse Atg8 substrates.

PubMed ID: 21177865

DOI: 10.1074/jbc.m110.199059

PubMed ID: 21406692

Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.

PubMed ID: 21406692

DOI: 10.1126/scisignal.2001570

PubMed ID: 22302004

Title: A high-throughput FRET-based assay for determination of Atg4 activity.

PubMed ID: 22302004

DOI: 10.4161/auto.18777

PubMed ID: 22223895

Title: Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.

PubMed ID: 22223895

DOI: 10.1074/mcp.m111.015131

PubMed ID: 23093945

Title: Regulation of ATG4B stability by RNF5 limits basal levels of autophagy and influences susceptibility to bacterial infection.

PubMed ID: 23093945

DOI: 10.1371/journal.pgen.1003007

PubMed ID: 22814378

Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.

PubMed ID: 22814378

DOI: 10.1073/pnas.1210303109

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 26378241

Title: ATG4B (Autophagin-1) phosphorylation modulates autophagy.

PubMed ID: 26378241

DOI: 10.1074/jbc.m115.658088

PubMed ID: 27527864

Title: O-GlcNAcylation of ATG4B positively regulates autophagy by increasing its hydroxylase activity.

PubMed ID: 27527864

DOI: 10.18632/oncotarget.11083

PubMed ID: 28633005

Title: Autophagy impairment mediated by S-nitrosation of ATG4B leads to neurotoxicity in response to hyperglycemia.

PubMed ID: 28633005

DOI: 10.1080/15548627.2017.1320467

PubMed ID: 29232556

Title: MST4 phosphorylation of ATG4B regulates autophagic activity, tumorigenicity, and radioresistance in glioblastoma.

PubMed ID: 29232556

DOI: 10.1016/j.ccell.2017.11.005

PubMed ID: 28821708

Title: A reversible phospho-switch mediated by ULK1 regulates the activity of autophagy protease ATG4B.

PubMed ID: 28821708

DOI: 10.1038/s41467-017-00303-2

PubMed ID: 29165041

Title: AKT-mediated phosphorylation of ATG4B impairs mitochondrial activity and enhances the Warburg effect in hepatocellular carcinoma cells.

PubMed ID: 29165041

DOI: 10.1080/15548627.2017.1407887

PubMed ID: 29458288

Title: Delipidation of mammalian Atg8-family proteins by each of the four ATG4 proteases.

PubMed ID: 29458288

DOI: 10.1080/15548627.2018.1437341

PubMed ID: 30443548

Title: Identification of kinases and phosphatases that regulate ATG4B activity by siRNA and small molecule screening in cells.

PubMed ID: 30443548

DOI: 10.3389/fcell.2018.00148

PubMed ID: 30076329

Title: A new quinoline-based chemical probe inhibits the autophagy-related cysteine protease ATG4B.

PubMed ID: 30076329

DOI: 10.1038/s41598-018-29900-x

PubMed ID: 30661429

Title: Redundancy of human ATG4 protease isoforms in autophagy and LC3/GABARAP processing revealed in cells.

PubMed ID: 30661429

DOI: 10.1080/15548627.2019.1569925

PubMed ID: 31315929

Title: Human ATG4 autophagy proteases counteract attachment of ubiquitin-like LC3/GABARAP proteins to other cellular proteins.

PubMed ID: 31315929

DOI: 10.1074/jbc.ac119.009977

PubMed ID: 31880198

Title: The protease activity of human ATG4B is regulated by reversible oxidative modification.

PubMed ID: 31880198

DOI: 10.1080/15548627.2019.1709763

PubMed ID: 32686895

Title: Distinct mechanisms for processing autophagy protein LC3-PE by RavZ and ATG4B.

PubMed ID: 32686895

DOI: 10.1002/cbic.202000359

PubMed ID: 33607258

Title: PFKP facilitates ATG4B phosphorylation during amino acid deprivation-induced autophagy.

PubMed ID: 33607258

DOI: 10.1016/j.cellsig.2021.109956

PubMed ID: 33773106

Title: ATG4 family proteins drive phagophore growth independently of the LC3/GABARAP lipidation system.

PubMed ID: 33773106

DOI: 10.1016/j.molcel.2021.03.001

PubMed ID: 33909989

Title: Non-canonical autophagy drives alternative ATG8 conjugation to phosphatidylserine.

PubMed ID: 33909989

DOI: 10.1016/j.molcel.2021.03.020

PubMed ID: 16183633

Title: Structural basis for the specificity and catalysis of human Atg4B responsible for mammalian autophagy.

PubMed ID: 16183633

DOI: 10.1074/jbc.m509158200

PubMed ID: 16325851

Title: The crystal structure of human Atg4b, a processing and de-conjugating enzyme for autophagosome-forming modifiers.

PubMed ID: 16325851

DOI: 10.1016/j.jmb.2005.11.018

PubMed ID: 19322194

Title: The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.

PubMed ID: 19322194

DOI: 10.1038/emboj.2009.80

PubMed ID: 28287329

Title: ATG4B contains a C-terminal LIR motif important for binding and efficient cleavage of mammalian orthologs of yeast Atg8.

PubMed ID: 28287329

DOI: 10.1080/15548627.2017.1287651

Sequence Information:

  • Length: 393
  • Mass: 44294
  • Checksum: F4ADB3192176E0E5
  • Sequence:
  • MDAATLTYDT LRFAEFEDFP ETSEPVWILG RKYSIFTEKD EILSDVASRL WFTYRKNFPA 
    IGGTGPTSDT GWGCMLRCGQ MIFAQALVCR HLGRDWRWTQ RKRQPDSYFS VLNAFIDRKD 
    SYYSIHQIAQ MGVGEGKSIG QWYGPNTVAQ VLKKLAVFDT WSSLAVHIAM DNTVVMEEIR 
    RLCRTSVPCA GATAFPADSD RHCNGFPAGA EVTNRPSPWR PLVLLIPLRL GLTDINEAYV 
    ETLKHCFMMP QSLGVIGGKP NSAHYFIGYV GEELIYLDPH TTQPAVEPTD GCFIPDESFH 
    CQHPPCRMSI AELDPSIAVG FFCKTEDDFN DWCQQVKKLS LLGGALPMFE LVELQPSHLA 
    CPDVLNLSLD SSDVERLERF FDSEDEDFEI LSL

Genular Protein ID: 1128436402

Symbol: B3KVU2_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Sequence Information:

  • Length: 146
  • Mass: 16221
  • Checksum: 0A3C1A20A98CCF4B
  • Sequence:
  • MRPPLSLSSA GSATHLPTCL ILPGEELIYL DPHTTQPAVE PTDGCFIPDE SFHCQHPPCR 
    MSIAELDPSI AVGFFCKTED DFNDWCQQVK KLSLLGGALP MFELVELQPS HLACPDVLNL 
    SLDSSDVERL ERFFDSEDED FEILSL

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.