Details for: hoxc5a

Gene ID: 30379

Symbol: hoxc5a

Ensembl ID: ENSDARG00000070340

Description: homeobox C5a

Associated with

  • Anterior/posterior pattern specification
    (GO:0009952)
  • Dna-binding transcription factor activity
    (GO:0003700)
  • Dna-binding transcription factor activity, rna polymerase ii-specific
    (GO:0000981)
  • Dna binding
    (GO:0003677)
  • Nucleus
    (GO:0005634)
  • Regulation of dna-templated transcription
    (GO:0006355)
  • Regulation of transcription by rna polymerase ii
    (GO:0006357)
  • Rna polymerase ii cis-regulatory region sequence-specific dna binding
    (GO:0000978)

Other Information

Genular Protein ID: 168084562

Symbol: B3DIP7_DANRE

Name: N/A

UniProtKB Accession Codes:

B3DIP7

Database IDs:

ARBA 8 CDD 1 CTD 1 EMBL 2 GO 3 Gene3D 1 InterPro 6 KEGG 1 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PRINTS 2 PROSITE 4 PROSITE-ProRule 1 Pfam 1 PhylomeDB 1 Proteomes 2 RefSeq 2 RuleBase 2 SMART 1 SUPFAM 1 TreeFam 1 ZFIN 2

Citations:

PubMed ID: 8617510

Title: Stable transfer of zebrafish chromosome segments into mouse cells.

PubMed ID: 8617510

PubMed ID: 8903739

Title: Characterization of the murine Hoxc-5 gene.

PubMed ID: 8903739

DOI: 10.1007/s003359900021

PubMed ID: 9425136

Title: Zebrafish hox genes: genomic organization and modified colinear expression patterns in the trunk.

PubMed ID: 9425136

PubMed ID: 10207156

Title: A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences.

PubMed ID: 10207156

PubMed ID: 10327649

Title: Genomic organization of the Hoxa4-Hoxa10 region from Morone saxatilis: implications for Hox gene evolution among vertebrates.

PubMed ID: 10327649

DOI: 10.1002/(SICI)1097-010X(19990415)285:1<41::AID-JEZ5>3.3.CO;2-4

PubMed ID: 24118534

Title: Combining animal personalities with transcriptomics resolves individual variation within a wild-type zebrafish population and identifies underpinning molecular differences in brain function.

PubMed ID: 24118534

PubMed ID: 23594743

Title: The zebrafish reference genome sequence and its relationship to the human genome.

PubMed ID: 23594743

DOI: 10.1038/nature12111

PubMed ID: 26335559

Title: Spatiotemporal analysis of zebrafish hox gene regulation by Cdx4.

PubMed ID: 26335559

PubMed ID: 27189481

Title: Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

PubMed ID: 27189481

PubMed ID: 29225029

Title: Vagus Motor Neuron Topographic Map Determined by Parallel Mechanisms of hox5 Expression and Time of Axon Initiation.

PubMed ID: 29225029

PubMed ID: 29684203

Title: The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes.

PubMed ID: 29684203

Sequence Information:

  • Length: 233
  • Mass: 26882
  • Checksum: 7C42BC6398BB24FF
  • Sequence:
    • MSSYVGKSFS KQTQDASSCR MHTFDNYGAH SEFHESNYAY EGLDLGGSFS SQIPTNSLRR 
EAINTTDRAR SSAAVQRTQS CSALGSRSFV STHGYNPLSH GLLSQKAEGN MEVMEKPSGK 
SRTDDIKMET TSAIKQQTNS TQRQNQSQPQ IYPWMTKLHM SHESDGKRSR TSYTRYQTLE 
LEKEFHFNRY LTRRRRIEIA NNLCLNERQI KIWFQNRRMK WKKDSKLKVK GGL

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.