Details for: sox11a

Gene ID: 30602

Symbol: sox11a

Ensembl ID: ENSDARG00000077811

Description: SRY-box transcription factor 11a

Associated with

  • Brain development
    (GO:0007420)
  • Camera-type eye morphogenesis
    (GO:0048593)
  • Closure of optic fissure
    (GO:0061386)
  • Dna-binding transcription activator activity, rna polymerase ii-specific
    (GO:0001228)
  • Dna-binding transcription factor activity, rna polymerase ii-specific
    (GO:0000981)
  • Dna binding
    (GO:0003677)
  • Lens development in camera-type eye
    (GO:0002088)
  • Negative regulation of smoothened signaling pathway
    (GO:0045879)
  • Negative regulation of transcription by rna polymerase ii
    (GO:0000122)
  • Neuron differentiation
    (GO:0030182)
  • Nucleus
    (GO:0005634)
  • Positive regulation of transcription by rna polymerase ii
    (GO:0045944)
  • Retinal rod cell development
    (GO:0046548)
  • Rna polymerase ii cis-regulatory region sequence-specific dna binding
    (GO:0000978)

Other Information

Genular Protein ID: 1029158805

Symbol: Q9I9C8_DANRE

Name: N/A

UniProtKB Accession Codes:

Q9I9C8 A4QP08 F6P1Z4

Database IDs:

ARBA 2 Bgee 1 CTD 1 EMBL 5 Ensembl 3 GO 13 Gene3D 1 HOGENOM 1 InterPro 3 KEGG 1 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PIRNR 1 PIRSF 1 PROSITE 2 PROSITE-ProRule 1 PaxDb 1 Pfam 1 Proteomes 2 RefSeq 2 SAM 1 SMART 1 STRING 1 SUPFAM 1 TreeFam 1 ZFIN 2 eggNOG 1

Citations:

PubMed ID: 12354655

Title: Dealing with saturation at the amino acid level: a case study based on anciently duplicated zebrafish genes.

PubMed ID: 12354655

PubMed ID: 15019997

Title: Origin and diversity of the SOX transcription factor gene family: genome-wide analysis in Fugu rubripes.

PubMed ID: 15019997

DOI: 10.1016/j.gene.2003.12.008

PubMed ID: 15261836

Title: Duplicate zebrafish runx2 orthologues are expressed in developing skeletal elements.

PubMed ID: 15261836

DOI: 10.1016/j.modgep.2004.01.016

PubMed ID: 15486693

Title: Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish.

PubMed ID: 15486693

DOI: 10.1007/s00239-004-2613-z

PubMed ID: 15809039

Title: Integrinalpha5 and delta/notch signaling have complementary spatiotemporal requirements during zebrafish somitogenesis.

PubMed ID: 15809039

DOI: 10.1016/j.devcel.2005.01.016

PubMed ID: 23594743

Title: The zebrafish reference genome sequence and its relationship to the human genome.

PubMed ID: 23594743

DOI: 10.1038/nature12111

PubMed ID: 26469318

Title: RFX transcription factors are essential for hearing in mice.

PubMed ID: 26469318

PubMed ID: 27235108

Title: Protein palmitoylation activate zygotic gene expression during the maternal-to-zygotic transition.

PubMed ID: 27235108

DOI: 10.1016/j.bbrc.2016.05.074

PubMed ID: 27910850

Title: The guanine nucleotide exchange factor Net1 facilitates the specification of dorsal cell fates in zebrafish embryos by promoting maternal beta-catenin activation.

PubMed ID: 27910850

PubMed ID: 27743342

Title: Expression of SoxC Transcription Factors during Zebrafish Retinal and Optic Nerve Regeneration.

PubMed ID: 27743342

PubMed ID: 30011017

Title: Parentally inherited long non-coding RNA Cyrano is involved in zebrafish neurodevelopment.

PubMed ID: 30011017

Sequence Information:

  • Length: 354
  • Mass: 39916
  • Checksum: 78090F83C21512EC
  • Sequence:
    • MVQQTDNSET DSMSREATDS DESEFMVSIN PDWCKTATGH IKRPMNAFMV WSKIERRKIM 
EQSPDMHNAE ISKRLGKRWK MLKDSEKIPF IREAERLRLK HMADYPDYKY RPKKKPKLDS 
SSKPSAPSPE KCSKTSKSSK KCPKLKANKT GSKSSSHGYG DEYAFKSTKV SKTVHIKSEF 
TDEDDDDDSE EDSRVRVKEE EEDPIRAYNV AKVPASPTLS SSTESEGASM YEEVRNNRLY 
YNFKNITKQS TMYPASVSPA SSRSVSTSSS SSEDADDLLF DFSLNFASSA QSSELGSQNP 
GNLSLSLVDK ELESFSEGSL GSHFEFPDYC TPELSEMIAG DWLEANFSDL VFTY

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.