Details for: sox11b

Gene ID: 30603

Symbol: sox11b

Ensembl ID: ENSDARG00000095743

Description: SRY-box transcription factor 11b

Associated with

  • Brain development
    (GO:0007420)
  • Camera-type eye morphogenesis
    (GO:0048593)
  • Closure of optic fissure
    (GO:0061386)
  • Dna-binding transcription activator activity, rna polymerase ii-specific
    (GO:0001228)
  • Dna-binding transcription factor activity, rna polymerase ii-specific
    (GO:0000981)
  • Dna binding
    (GO:0003677)
  • Dorsal/ventral pattern formation
    (GO:0009953)
  • Lens development in camera-type eye
    (GO:0002088)
  • Negative regulation of smoothened signaling pathway
    (GO:0045879)
  • Negative regulation of transcription by rna polymerase ii
    (GO:0000122)
  • Neuron differentiation
    (GO:0030182)
  • Nucleus
    (GO:0005634)
  • Positive regulation of transcription by rna polymerase ii
    (GO:0045944)
  • Regulation of sprouting angiogenesis
    (GO:1903670)
  • Response to wounding
    (GO:0009611)
  • Retinal rod cell development
    (GO:0046548)
  • Rna polymerase ii cis-regulatory region sequence-specific dna binding
    (GO:0000978)

Other Information

Genular Protein ID: 3738613733

Symbol: Q9I9C7_DANRE

Name: N/A

UniProtKB Accession Codes:

Q9I9C7

Database IDs:

ARBA 2 EMBL 2 GO 16 Gene3D 1 InterPro 3 KEGG 1 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PIRNR 1 PIRSF 1 PROSITE 2 PROSITE-ProRule 1 Pfam 1 PhylomeDB 1 Proteomes 2 RefSeq 2 SAM 1 SMART 1 SUPFAM 1 ZFIN 2

Citations:

PubMed ID: 12354655

Title: Dealing with saturation at the amino acid level: a case study based on anciently duplicated zebrafish genes.

PubMed ID: 12354655

PubMed ID: 15019997

Title: Origin and diversity of the SOX transcription factor gene family: genome-wide analysis in Fugu rubripes.

PubMed ID: 15019997

DOI: 10.1016/j.gene.2003.12.008

PubMed ID: 15261836

Title: Duplicate zebrafish runx2 orthologues are expressed in developing skeletal elements.

PubMed ID: 15261836

DOI: 10.1016/j.modgep.2004.01.016

PubMed ID: 15486693

Title: Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish.

PubMed ID: 15486693

DOI: 10.1007/s00239-004-2613-z

PubMed ID: 15520368

Title: Hematopoietic gene expression profile in zebrafish kidney marrow.

PubMed ID: 15520368

DOI: 10.1073/pnas.0407241101

PubMed ID: 23594743

Title: The zebrafish reference genome sequence and its relationship to the human genome.

PubMed ID: 23594743

DOI: 10.1038/nature12111

PubMed ID: 25557621

Title: Sox4 regulates choroid fissure closure by limiting Hedgehog signaling during ocular morphogenesis.

PubMed ID: 25557621

PubMed ID: 25938946

Title: The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation.

PubMed ID: 25938946

PubMed ID: 26030930

Title: Sequencing and De Novo Assembly of the Gonadal Transcriptome of the Endangered Chinese Sturgeon (Acipenser sinensis).

PubMed ID: 26030930

PubMed ID: 28738802

Title: Histological and transcriptomic effects of 17alpha-methyltestosterone on zebrafish gonad development.

PubMed ID: 28738802

PubMed ID: 27743342

Title: Expression of SoxC Transcription Factors during Zebrafish Retinal and Optic Nerve Regeneration.

PubMed ID: 27743342

Sequence Information:

  • Length: 368
  • Mass: 41194
  • Checksum: A0812E13321DF758
  • Sequence:
    • MVQQTEHSET ESSVSRETTD TEESEMMACS PVPPKPDWCK TATGHIKRPM NAFMVWSKIE 
RRKIMEQSPD MHNAEISKRL GKRWKMLKDS EKIPFIREAE RLRLQHMADY PDYKYRPKKK 
PKLDSSSKPA VQSPEKISKS VKAAAGKKCA KLKPSKPGNI TARASTQDCR FNYVFTNLKV 
TKSIKRELTD DEDDDDDDDD DDDEEDDYED EEHIRLHNVP ASPTLSSAAE SEHGASMYEE 
SRHTSATPGS RLFYNFKNIT KQSAAYPASV SPASSFRSVS SSSSSSSEDS DDLLVDFSLN 
LAAGSHTADL GNTSGNLCLS LVDKDLDSFS EGSLGSHFEF PDYCTPELSE MIAGDWLEAN 
FSDLVFTY

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.