Details for: Vsx1

Gene ID: 31470

Symbol: Vsx1

Ensembl ID: FBgn0263511

Description: Visual system homeobox 1

Associated with

  • Dna-binding transcription factor activity
    (GO:0003700)
  • Dna-binding transcription factor activity, rna polymerase ii-specific
    (GO:0000981)
  • Dna binding
    (GO:0003677)
  • Insect visual primordium development
    (GO:0001748)
  • Negative regulation of transcription by rna polymerase ii
    (GO:0000122)
  • Nucleus
    (GO:0005634)
  • Positive regulation of neural precursor cell proliferation
    (GO:2000179)
  • Regulation of dna-templated transcription
    (GO:0006355)
  • Regulation of transcription by rna polymerase ii
    (GO:0006357)
  • Sequence-specific double-stranded dna binding
    (GO:1990837)

Other Information

Genular Protein ID: 2898349810

Symbol: Q9W4B2_DROME

Name: N/A

UniProtKB Accession Codes:

Q9W4B2

Database IDs:

AGR 1 ARBA 8 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CDD 1 CTD 1 ChiTaRS 1 DNASU 1 EMBL 6 EnsemblMetazoa 2 ExpressionAtlas 1 FlyBase 2 GO 8 Gene3D 1 GeneTree 1 GenomeRNAi 1 HOGENOM 1 InParanoid 1 IntAct 1 InterPro 4 KEGG 1 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PROSITE 5 PROSITE-ProRule 1 PaxDb 1 Pfam 1 Proteomes 2 RefSeq 2 RuleBase 1 SAM 2 SMART 1 SMR 1 STRING 1 SUPFAM 1 UCSC 1 VEuPathDB 1 eggNOG 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

PubMed ID: 26109357

Title: Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.

PubMed ID: 26109357

DOI: .1534/g3.115.018929

PubMed ID: 26109356

Title: Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.

PubMed ID: 26109356

DOI: .1534/g3.115.018937

PubMed ID: 25589440

Title: The Release 6 reference sequence of the Drosophila melanogaster genome.

PubMed ID: 25589440

Sequence Information:

  • Length: 837
  • Mass: 86886
  • Checksum: 54955738CD7203D9
  • Sequence:
    • MQATKMRTPF AIQEILGLGA YQQQATASAT PSEAPPSPAA TPPPTANTPA NGSLSAVQQQ 
QQQQQQQQQQ QQQLQQQQQQ AIDSLRESRS ISPDVSRLSA AAAAAAAAAA HCQLPVFNPA 
NFYAAAGYAA AADPGNAAAA HHHHMTTLAA AAYLRGFLPP GFSTPHEFRG HFQQHFGAQF 
AEQAAARGQE YASSLANASG DEQSPSKNSS SSGNGGSGGS GSGSGGGNPT SNGLGHLGSP 
TASNGGSGGG AGVGGSGGGS GTSGSNSSTS GNGGNGGSSG SRSSPAGPHH SAALAAHQHA 
AAAAAAAHHH AAAAAAAHHA HHAHAQAHAH AHAHVHAHAA HAAHAAHAHA HHAEAFLGAA 
GGAGGNPNSL LAAHGGDVLV GPGGTGPGGK KKNKRRHGRT IFTSSQLEEL EKAFKEAHYP 
DVSARELLSM KTGLAEDRIQ VWYQNRRAKW RKTEKCWGHS TKMAEYGLYG AMVRHSLPLP 
ETIIKSAKED ESVAPWLLGM HKKSLEAAEL LKSDESDRET PTSDDTNTSY SAGSTHNSPI 
SSFSISRLLF DAPPPAAGSA GGKGHHHHHH HHKGHHHAHV HAQAQAHAHM LLHHQQQQQQ 
QQQQQQHHHH LHAAENSLQQ QQVAGTGSGS GSGSGSGTGA GSTGPPAHHP YNQQQHLHHL 
QQLQQQQQQQ QQQAQQQQQH HHHQHHHSVH HMHHHNAAAG YAEAAVAAAA AAAAVAAAAN 
ARNAAAAAAV AAASASASAA VTIAESEAEE EQDDIEDMEL DKDCEVEEDV EPVDNDTNTN 
NEHDNECDAD ADVEADVDAD ADADPEIDIC DDHDEEMRLQ EQLLLKVKQE QAHLGSR

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.