Details for: Lim1

Gene ID: 31813

Symbol: Lim1

Ensembl ID: FBgn0026411

Description: LIM homeobox 1

Associated with

  • Compound eye development
    (GO:0048749)
  • Dna-binding transcription factor activity, rna polymerase ii-specific
    (GO:0000981)
  • Dna binding
    (GO:0003677)
  • Imaginal disc-derived leg morphogenesis
    (GO:0007480)
  • Leg disc proximal/distal pattern formation
    (GO:0007479)
  • Negative regulation of dna-templated transcription
    (GO:0045892)
  • Neuron differentiation
    (GO:0030182)
  • Nucleus
    (GO:0005634)
  • Positive regulation of dna-templated transcription
    (GO:0045893)
  • Regulation of dna-templated transcription
    (GO:0006355)
  • Regulation of gene expression
    (GO:0010468)
  • Regulation of transcription by rna polymerase ii
    (GO:0006357)
  • Rna polymerase ii transcription regulatory region sequence-specific dna binding
    (GO:0000977)

Other Information

Genular Protein ID: 666535914

Symbol: Q9V472_DROME

Name: N/A

UniProtKB Accession Codes:

Q9V472 Q9W3B9

Database IDs:

AGR 1 ARBA 7 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CDD 3 CTD 1 DNASU 1 EMBL 6 EnsemblMetazoa 1 ExpressionAtlas 1 FlyBase 2 GO 12 Gene3D 2 GeneTree 1 GenomeRNAi 1 HOGENOM 1 InParanoid 1 IntAct 1 InterPro 4 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PROSITE 6 PROSITE-ProRule 2 PaxDb 1 Pfam 2 Proteomes 2 RefSeq 1 RuleBase 1 SAM 1 SMART 2 SMR 1 STRING 1 SUPFAM 2 UCSC 1 VEuPathDB 1 eggNOG 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

PubMed ID: 26109357

Title: Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.

PubMed ID: 26109357

DOI: .1534/g3.115.018929

PubMed ID: 26109356

Title: Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.

PubMed ID: 26109356

DOI: .1534/g3.115.018937

PubMed ID: 25589440

Title: The Release 6 reference sequence of the Drosophila melanogaster genome.

PubMed ID: 25589440

Sequence Information:

  • Length: 505
  • Mass: 54788
  • Checksum: 0633EEBB873F7905
  • Sequence:
    • MAFGAVLHTS QHNIGRSEPP VGVGDPCAGC NKPILDKFLL NVLERAWHAS CVRCCECLQP 
LTDKCFSRES KLYCRNDFFR RYGTKCSGCG QGIAPSDLVR KPRDKVFHLN CFTCCICRKQ 
LSTGEQLYVL DDNKFICKDD YLLGKAPSCG HNSLSDSLMG SASEDDDDDD PPHLRATALG 
LGVLGPNGPD SAGGPLGTSD ISVQSMSTDS KNTHDDSDQG SLDGDPDGRG DSQAENKSPD 
DANGSKRRGP RTTIKAKQLE VLKTAFNQTP KPTRHIREQL AKETGLPMRV IQVWFQNKRS 
KERRMKQITS MGRPPFFGGA RKMRGFPMNL SPGGLDDGPG FPYFAADAKF EFGYGGPFHP 
HDGPYFPGHP GGPMPFNAPG GPMDHSGPIP MVNEFGLTPE ATFLGQAGGP PMQLQSAVGP 
PPPPPPPSAE HLMAAAAAAA QQQAAQQQQQ QQQQQQQQQQ QNAQQAANQT QQQQQQNGPR 
TNSPEFMSSA NFSEPQNMQN EGLVW

Genular Protein ID: 1270132091

Symbol: M9PJE4_DROME

Name: N/A

UniProtKB Accession Codes:

M9PJE4

Database IDs:

AGR 1 ARBA 5 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CDD 1 CTD 1 DNASU 1 EMBL 2 EnsemblMetazoa 1 ExpressionAtlas 1 FlyBase 2 GO 11 Gene3D 1 GeneTree 1 GenomeRNAi 1 HOGENOM 1 InterPro 3 KEGG 1 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PROSITE 3 PROSITE-ProRule 1 Pfam 1 Proteomes 2 RefSeq 1 RuleBase 1 SAM 1 SMART 1 SMR 1 SUPFAM 1 VEuPathDB 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

Sequence Information:

  • Length: 347
  • Mass: 37190
  • Checksum: EDF2AD90FDAD4039
  • Sequence:
    • MGSASEDDDD DDPPHLRATA LGLGVLGPNG PDSAGGPLGT SDISVQSMST DSKNTHDDSD 
QGSLDGDPDG RGDSQAENKS PDDANGSKRR GPRTTIKAKQ LEVLKTAFNQ TPKPTRHIRE 
QLAKETGLPM RVIQVWFQNK RSKERRMKQI TSMGRPPFFG GARKMRGFPM NLSPGGLDDG 
PGFPYFAADA KFEFGYGGPF HPHDGPYFPG HPGGPMPFNA PGGPMDHSGP IPMVNEFGLT 
PEATFLGQAG GPPMQLQSAV GPPPPPPPPS AEHLMAAAAA AAQQQAAQQQ QQQQQQQQQQ 
QQQNAQQAAN QTQQQQQQNG PRTNSPEFMS SANFSEPQNM QNEGLVW

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.