Details for: Rrp45

Gene ID: 32665

Symbol: Rrp45

Ensembl ID: FBgn0030789

Description: Rrp45

Associated with

  • Deadenylation-dependent mrna decay
    (R-DME-429914)
  • Major pathway of rrna processing in the nucleolus and cytosol
    (R-DME-6791226)
  • Metabolism of rna
    (R-DME-8953854)
  • Mrna decay by 3' to 5' exoribonuclease
    (R-DME-429958)
  • Rrna processing
    (R-DME-72312)
  • Rrna processing in the nucleus and cytosol
    (R-DME-8868773)
  • Cytoplasmic exosome (rnase complex)
    (GO:0000177)
  • Exonucleolytic catabolism of deadenylated mrna
    (GO:0043928)
  • Exonucleolytic trimming to generate mature 3'-end of 5.8s rrna from tricistronic rrna transcript (ssu-rrna, 5.8s rrna, lsu-rrna)
    (GO:0000467)
  • Exosome (rnase complex)
    (GO:0000178)
  • Nuclear-transcribed mrna catabolic process, exonucleolytic, 3'-5'
    (GO:0034427)
  • Nuclear exosome (rnase complex)
    (GO:0000176)
  • Nuclear mrna surveillance
    (GO:0071028)
  • Nuclear polyadenylation-dependent mrna catabolic process
    (GO:0071042)
  • Nuclear polyadenylation-dependent rrna catabolic process
    (GO:0071035)
  • Nuclear polyadenylation-dependent trna catabolic process
    (GO:0071038)
  • Rna processing
    (GO:0006396)
  • U1 snrna 3'-end processing
    (GO:0034473)
  • U4 snrna 3'-end processing
    (GO:0034475)
  • U5 snrna 3'-end processing
    (GO:0034476)

Other Information

Genular Protein ID: 620007933

Symbol: Q8T4A9_DROME

Name: N/A

UniProtKB Accession Codes:

Q8T4A9 Q9VXB2

Database IDs:

AGR 1 ARBA 6 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CDD 1 CTD 1 ComplexPortal 2 DNASU 1 EMBL 5 EnsemblMetazoa 2 FlyBase 2 GO 13 Gene3D 1 GeneTree 1 GenomeRNAi 1 HOGENOM 1 InParanoid 1 IntAct 1 InterPro 6 KEGG 1 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PRO 1 PaxDb 1 PeptideAtlas 1 Pfam 4 Proteomes 2 Reactome 4 RefSeq 2 SAM 1 SMR 1 STRING 1 SUPFAM 2 UCSC 1 VEuPathDB 1 eggNOG 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

PubMed ID: 26109357

Title: Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.

PubMed ID: 26109357

DOI: .1534/g3.115.018929

PubMed ID: 26109356

Title: Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.

PubMed ID: 26109356

DOI: .1534/g3.115.018937

PubMed ID: 25589440

Title: The Release 6 reference sequence of the Drosophila melanogaster genome.

PubMed ID: 25589440

Sequence Information:

  • Length: 412
  • Mass: 46303
  • Checksum: D86F992BC5E57C1F
  • Sequence:
    • MFHNSNFFEP GKSKPERSFV QLAVKQNQRL DGRRSNESRD VELTFGKDWG SVAVSMGDTK 
VLAQVTCEMG PPALSRPNEG KIHLNVYLGG VAFLDEAHTT HDQRSLKLNS LLERTFRSSR 
SIDLESLCVA VEKHVWCIRV NVNVLNHDGN LYDASTIATL AALMHFRRPD VWYKDGELRI 
FKKKEREFIP LLFHHYPVSV TYCVYKSSVQ PILDPTLLEE NAADSVIVLS FNSFQELCSL 
TAGGTAPTNA RIIMQCARNA AVRCKSLLNF VRKALALDEE CRSQGDQSVD GLVALILNTE 
HKLSYNKLMG RQKQEQQPPP SEKMQLDNNE SSETPVANEE PSKEESAGAP MDTSDWLPHD 
EDSQELPMRS EASPSKAGLK GKQSRGKYKA NKKTPPRKQN HSDSEEEAKR YI

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.