Details for: Rat1

Gene ID: 33964

Symbol: Rat1

Ensembl ID: FBgn0031868

Description: Rat1 5'-3' exoribonuclease

Associated with

Other Information

Genular Protein ID: 617935380

Symbol: XRN2_DROME

Name: 5'-3' exoribonuclease 2 homolog

UniProtKB Accession Codes:

Q9VM71 B8A3W7 Q5BI90

Database IDs:

AGR 1 AlphaFoldDB 1 Bgee 1 BioGRID 1 BioGRID-ORCS 1 CDD 1 CTD 1 DNASU 1 EC 1 EMBL 3 EnsemblMetazoa 2 ExpressionAtlas 1 FlyBase 1 GO 8 Gene3D 2 GeneTree 1 Genevisible 1 GenomeRNAi 1 HOGENOM 1 InParanoid 1 IntAct 1 InterPro 4 KEGG 1 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PIRSF 1 PRO 1 PaxDb 1 Pfam 2 PhylomeDB 1 Proteomes 1 RefSeq 2 SAM 1 SMR 1 STRING 1 UCSC 1 VEuPathDB 1 eggNOG 1 iPTMnet 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 17363252

Title: Cutoff and aubergine mutations result in retrotransposon upregulation and checkpoint activation in Drosophila.

PubMed ID: 17363252

DOI: 10.1016/j.cub.2007.02.027

PubMed ID: 18327897

Title: Phosphoproteome analysis of Drosophila melanogaster embryos.

PubMed ID: 18327897

DOI: 10.1021/pr700696a

Sequence Information:

  • Length: 908
  • Mass: 103960
  • Checksum: D9D113DB6630DD0F
  • Sequence:
    • MGVPAFFRWL SRKYPSVIIE CNENKQVDAD TGRNIYEDPT LPNPNGIEFD NLYLDMNGII 
HPCTHPEDKP APKNEDEMMV AIFECIDRLF GIVRPRKLLY MAIDGVAPRA KMNQQRSRRF 
RAAKETTEKR LEIARIREEL LSRGCKLPPE KEKGEHFDSN CITPGTPFMD RLSKCLHYFV 
HDRQNNNPAW KGIKVILSDA NVPGEGEHKI MDYIRKQRAQ PDHDPNTQHV LCGADADLIM 
LGLATHEPNF TIIREEFLPN KPRPCDICNG FGHEMDKCVG LGATAPTSAN FKPDVPIGAE 
VKFIFVRLSV LREYLKQTLE MPNLPFEYSF ERALDDWVFM CFFVGNDFLP HLPSLEIREG 
AVDRLVELYK KCVYKTRGYL TDSGDVNLDR VQLIMTDLGN AEDQIFKSRQ RREEQFKARD 
KARKRQERNQ DHGSLNQSAF GASAVGPNSQ QRSVGNYKEE AAALRNRKRT SDMANLDDED 
EEENNDEVRL WEDGFKDRYY ESKFDVAPGN QQFRYAVALQ YVRGLCWVLK YYYQGCASWN 
WYFPYHYAPF ASDFVNIQGL STMFEKGTKP FNPLEQLMGV FPAASSSHVP EPWAKLMSDP 
ESPIIDFYPE DFKIDLNGKK FAWQGVALLP FVDEKRLFKA LVPYYDQLTG EEVKRNKRGD 
NYLYISNQSP HYKKVKKISE KDDESVCKAI SFDGMRGTLG KTELNTAISG VLKSPISGLS 
DINDNITVTT TFRDPEYDED YIFEAKRLEN AVDPPQVLPN EQSGNKHRPV IGFNSHLTRA 
YVPDSGHRML NAGIRNQQGG GGNGGGGGGY GQGGGYGQGI GGNQGQSYQN NSRNYNYNYN 
NNYNQHQGGG YQNNYNNRQQ QQYGHNQRFN QDNSNQQQRN FNNYNGPRNN NYQQQGGSRQ 
QNQNYRRF

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.