Details for: Trf

Gene ID: 34102

Symbol: Trf

Ensembl ID: FBgn0010287

Description: TBP-related factor

Associated with

  • Esr-mediated signaling
    (R-DME-8939211)
  • Estrogen-dependent gene expression
    (R-DME-9018519)
  • Gene expression (transcription)
    (R-DME-74160)
  • Generic transcription pathway
    (R-DME-212436)
  • Regulation of tp53 activity
    (R-DME-5633007)
  • Regulation of tp53 activity through phosphorylation
    (R-DME-6804756)
  • Rna polymerase iii transcription
    (R-DME-74158)
  • Rna polymerase iii transcription initiation
    (R-DME-76046)
  • Rna polymerase iii transcription initiation from type 1 promoter
    (R-DME-76061)
  • Rna polymerase iii transcription initiation from type 2 promoter
    (R-DME-76066)
  • Rna polymerase ii pre-transcription events
    (R-DME-674695)
  • Rna polymerase ii promoter escape
    (R-DME-73776)
  • Rna polymerase ii transcribes snrna genes
    (R-DME-6807505)
  • Rna polymerase ii transcription
    (R-DME-73857)
  • Rna polymerase ii transcription initiation
    (R-DME-75953)
  • Rna polymerase ii transcription initiation and promoter clearance
    (R-DME-76042)
  • Rna polymerase ii transcription pre-initiation and promoter opening
    (R-DME-73779)
  • Rna polymerase i promoter clearance
    (R-DME-73854)
  • Rna polymerase i promoter escape
    (R-DME-73772)
  • Rna polymerase i transcription
    (R-DME-73864)
  • Signaling by nuclear receptors
    (R-DME-9006931)
  • Signal transduction
    (R-DME-162582)
  • Transcriptional regulation by tp53
    (R-DME-3700989)
  • Core promoter sequence-specific dna binding
    (GO:0001046)
  • Dna-templated transcription initiation
    (GO:0006352)
  • Dna binding
    (GO:0003677)
  • Embryo development ending in birth or egg hatching
    (GO:0009792)
  • General transcription initiation factor activity
    (GO:0140223)
  • Nucleus
    (GO:0005634)
  • Polytene chromosome
    (GO:0005700)
  • Rna polymerase ii cis-regulatory region sequence-specific dna binding
    (GO:0000978)
  • Rna polymerase ii general transcription initiation factor activity
    (GO:0016251)
  • Rna polymerase iii general transcription initiation factor binding
    (GO:0001025)
  • Rna polymerase iii type 2 promoter sequence-specific dna binding
    (GO:0001003)
  • Tfiia-class transcription factor complex binding
    (GO:0001092)
  • Tfiib-class transcription factor binding
    (GO:0001093)
  • Transcription by rna polymerase ii
    (GO:0006366)
  • Transcription by rna polymerase iii
    (GO:0006383)
  • Transcription factor tfiid complex
    (GO:0005669)
  • Transcription initiation at rna polymerase iii promoter
    (GO:0006384)
  • Transcription initiation at rna polymerase ii promoter
    (GO:0006367)
  • Transcription regulator complex
    (GO:0005667)
  • Trna transcription by rna polymerase iii
    (GO:0042797)

Other Information

Genular Protein ID: 358373388

Symbol: TRF_DROME

Name: TBP-related factor

UniProtKB Accession Codes:

Q27896

Database IDs:

AGR 1 AlphaFoldDB 1 Bgee 1 BioGRID 1 BioGRID-ORCS 1 CDD 1 CTD 1 ChiTaRS 1 EMBL 4 EnsemblMetazoa 1 FlyBase 1 GO 18 Gene3D 1 Genevisible 1 GenomeRNAi 1 HAMAP 1 HOGENOM 1 InParanoid 1 IntAct 1 InterPro 4 KEGG 1 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PIR 1 PRINTS 1 PRO 1 PROSITE 1 PaxDb 1 Pfam 1 PhylomeDB 1 Proteomes 1 Reactome 11 RefSeq 1 SAM 1 SMR 1 STRING 1 SUPFAM 1 SignaLink 1 VEuPathDB 1 eggNOG 1

Citations:

PubMed ID: 8429912

Title: A new factor related to TATA-binding protein has highly restricted expression patterns in Drosophila.

PubMed ID: 8429912

DOI: 10.1038/361557a0

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537569

Title: A Drosophila full-length cDNA resource.

PubMed ID: 12537569

DOI: 10.1186/gb-2002-3-12-research0080

Sequence Information:

  • Length: 224
  • Mass: 25456
  • Checksum: CA619BE4BA726460
  • Sequence:
    • MQFHFKVADA ERDRDNVAAT SNAAANPHAA LQPQQPVALV EPKDAQHEIR LQNIVATFSV 
NCELDLKAIN SRTRNSEYSP KRFRGVIMRM HSPRCTALIF RTGKVICTGA RNEIEADIGS 
RKFARILQKL GFPVKFMEYK LQNIVATVDL RFPIRLENLN HVHGQFSSYE PEMFPGLIYR 
MVKPRIVLLI FVNGKVVFTG AKSRKDIMDC LEAISPILLS FRKT

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.