Details for: Smg5

Gene ID: 34804

Symbol: Smg5

Ensembl ID: FBgn0019890

Description: Smg5 nonsense mediated mRNA decay factor

Associated with

  • Metabolism of rna
    (R-DME-8953854)
  • Nonsense-mediated decay (nmd)
    (R-DME-927802)
  • Nonsense mediated decay (nmd) enhanced by the exon junction complex (ejc)
    (R-DME-975957)
  • Mirna-mediated post-transcriptional gene silencing
    (GO:0035195)
  • Nuclear-transcribed mrna catabolic process, nonsense-mediated decay
    (GO:0000184)
  • Regulatory ncrna-mediated post-transcriptional gene silencing
    (GO:0035194)
  • Telomerase holoenzyme complex
    (GO:0005697)
  • Telomerase rna binding
    (GO:0070034)
  • Telomeric dna binding
    (GO:0042162)

Other Information

Genular Protein ID: 1102557281

Symbol: Q9V414_DROME

Name: N/A

UniProtKB Accession Codes:

Q9V414

Database IDs:

AGR 1 ARBA 3 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CDD 1 CTD 1 EMBL 10 EnsemblMetazoa 3 ExpressionAtlas 1 FlyBase 2 GO 5 Gene3D 2 GeneTree 1 HOGENOM 1 InParanoid 1 IntAct 1 InterPro 5 KEGG 1 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PaxDb 1 PeptideAtlas 1 Pfam 3 Proteomes 2 Reactome 1 RefSeq 3 SAM 1 SMART 2 SMR 1 STRING 1 SUPFAM 1 UCSC 1 VEuPathDB 1 eggNOG 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 12881430

Title: Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways.

PubMed ID: 12881430

DOI: 10.1093/emboj/cdg371

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

PubMed ID: 26109357

Title: Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.

PubMed ID: 26109357

DOI: .1534/g3.115.018929

PubMed ID: 26109356

Title: Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.

PubMed ID: 26109356

DOI: .1534/g3.115.018937

PubMed ID: 25589440

Title: The Release 6 reference sequence of the Drosophila melanogaster genome.

PubMed ID: 25589440

Sequence Information:

  • Length: 1177
  • Mass: 135314
  • Checksum: 2B532D229E690841
  • Sequence:
    • MEVTFSSGGS SNASSECAID GGTNRCRGLE PNNGTCILSQ EVKDLYRSLY TASKQLDDAK 
RNVQSVGQLF QHEIEEKRSL LVQLCKQIIF KDYQSVGKKV REVMWRRGYY EFIAFVKKNW 
HKQCQDAATA QENMQKLERF LCAGIFNYKR LSARMEEIYD LDLKYLIDFS IISDGYISDM 
IGDTMESSHS GTHAVDKSLE AVSFALDTIH SSLLSLGDLH RYFLDFRIDS KLSISKEQVA 
KYYLEAFKLN PAIGMAQNQL GTLHYGQNHD LDSTYHYLYS LVCIIPFELS ENNLNKLFAK 
HTEYLERMDP EKLDFNIEDF FARFYLIVDI FFFDKEVPDF NALCHCVLID LRKILCSQQL 
RVPEPSIFKI VSILFFCLSK LKMINSPKVY SLHAFLVAAC SDLMDACIVS IEQTILARAQ 
DNERFQAEYE ERFQEFDTVV RKSRNEYKNW LAAVGECERK DKKLMPRPHS LKDCSSDSRD 
SQHSGEEAKT QEAADGDKIG EAVSTRSSDE AKESDLKTPL SCKSKRRGMR LRRRRRKIAQ 
SDDSSCYDSE SELDTDFYSD EEDYTDLSSN FDTDFSDIDA ADPGEPCGEE RYAAANYSKK 
ERKAGGGGGG GVGGVVYSDN EDVVIEEEKI VYPNEVERRS NSQEADSEEL LRSFEVLQLN 
FKSAEDAQSK PVAPPPVSFS EPPKKLVYRN KYTKINPNIV IDCLHNEPTI RALKMLFDWL 
RINPEILIGC YHSNPEFVHK IMKLLNYCNI DIFTRKVYFE RDLLTTANVR DSLVELFDVR 
ANVPLTEDFA FKNFDIFQST QITLDWETII RERVTPQEES ILRIFKMVDF GFFICKQKKF 
NYRFCVKTRR FTETQKKKQR EEKKGGGSRR RERRTAPKTN RTKRNEGRTR RYSDRKNGIV 
RKSYTSNEEK DTVEECRKMP RKGYLRNRNA EKAAAVITSA TGTSVAGGTS ASTTTNSVIE 
KLNLQSSSGA DEERSEAKSK KCELMGKLWL QNEVETLEEE LRDSPAHVVM SPFVVVDSKA 
LTEYNGIVKS LVRTKKCIVL IPNAVLNELD DLKKRSENVR HVIRWLEQEF KQGNRHLRAQ 
RDNESQPLSL LKISRKMDRD ASVFLQIAQF CNHLVANHAD PHVSELQKSV VTYLSGDNLH 
EKNRQQQNFS YTGILDSIPV RYAQIQSFYA KFKANKK

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.