Details for: Lim3

Gene ID: 35184

Symbol: Lim3

Ensembl ID: FBgn0002023

Description: Lim3

Associated with

  • Dna-binding transcription factor activity, rna polymerase ii-specific
    (GO:0000981)
  • Dna binding
    (GO:0003677)
  • Motor neuron axon guidance
    (GO:0008045)
  • Nervous system development
    (GO:0007399)
  • Neuron differentiation
    (GO:0030182)
  • Nucleus
    (GO:0005634)
  • Positive regulation of gene expression
    (GO:0010628)
  • Regulation of dna-templated transcription
    (GO:0006355)
  • Regulation of transcription by rna polymerase ii
    (GO:0006357)
  • Rna polymerase ii transcription regulatory region sequence-specific dna binding
    (GO:0000977)

Other Information

Genular Protein ID: 3815284743

Symbol: M9NCY1_DROME

Name: N/A

UniProtKB Accession Codes:

M9NCY1

Database IDs:

AGR 1 ARBA 7 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CDD 3 CTD 1 DNASU 1 EMBL 2 EnsemblMetazoa 1 ExpressionAtlas 1 FlyBase 2 GO 8 Gene3D 2 GeneTree 1 GenomeRNAi 1 HOGENOM 1 InterPro 4 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PROSITE 6 PROSITE-ProRule 2 Pfam 2 Proteomes 2 RefSeq 1 RuleBase 1 SAM 1 SMART 2 SMR 1 SUPFAM 2 VEuPathDB 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

Sequence Information:

  • Length: 405
  • Mass: 44920
  • Checksum: 8E77D81CF8582CFD
  • Sequence:
    • MATIPKCGGC HELILDRFIL KVLERTWHAK CLQCSECHGQ LNDKCFARNG QLFCKEDFFK 
RYGTKCSACD MGIPPTQVVR RAQDNVYHLQ CFLCAMCSRT LNTGDEFYLM EDRKLICKRD 
YEEAKAKGLY LDGSLDGDQP NKRPRTTITA KQLETLKTAY NNSPKPARHV REQLSQDTGL 
DMRVVQVWFQ NRRAKEKRLK KDAGRTRWSQ YFRSMKGNCS PRTDKFLDKD ELKVDYDSFS 
HHDLSNDSYS TVNLGLDEGA SPHSIRGSYM HGSSSPSQYP PSSRSPPPVG QGHTFGSYPD 
NIVYTNIDQA VGSSLHASKA HHRLHSSNNV SDLSNDSSPD QGYPDFPPSP DSWLGDSGST 
NTTSANNNAN NNSSSSHNNN NSSGGGSGGV SVSTAPNPSA PGVHY

Genular Protein ID: 3925335363

Symbol: M9PD53_DROME

Name: N/A

UniProtKB Accession Codes:

M9PD53

Database IDs:

AGR 1 ARBA 7 Bgee 1 BioGRID-ORCS 1 CDD 3 CTD 1 DNASU 1 EMBL 2 EnsemblMetazoa 1 ExpressionAtlas 1 FlyBase 2 GO 9 Gene3D 2 GeneTree 1 GenomeRNAi 1 InParanoid 1 IntAct 1 InterPro 4 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PROSITE 6 PROSITE-ProRule 2 PaxDb 1 Pfam 2 Proteomes 2 RefSeq 1 RuleBase 1 SAM 1 SMART 2 STRING 1 SUPFAM 3 VEuPathDB 1 eggNOG 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

Sequence Information:

  • Length: 555
  • Mass: 62487
  • Checksum: 099E579B27BA6880
  • Sequence:
    • MMQTLKPPPP LHHHHQHQHQ LQHPPQQQPH PHQQLQHPLQ QQQHLSAMDN HQQHQPHIHQ 
QQQQQQQLPP TPQASHLVGG QQQQQQHPHH NHLAVDQDDP NPELVLALIS RNRALEATIP 
KCGGCHELIL DRFILKVLER TWHAKCLQCS ECHGQLNDKC FARNGQLFCK EDFFKRYGTK 
CSACDMGIPP TQVVRRAQDN VYHLQCFLCA MCSRTLNTGD EFYLMEDRKL ICKRDYEEAK 
AKGLYLDGSL DGDQPNKRPR TTITAKQLET LKTAYNNSPK PARHVREQLS QDTGLDMRVV 
QVWFQNRRAK EKRLKKDAGR TRWSQYFRSM KGNCSPRTDK FLDKDELKVD YDSFSHHDLS 
NDSYSTVNLG LDEGASPHSI RGSYMHGSSS PSQYPPSSRS PPPVGQGHTF GSYPDNIVYT 
NIDQAVGSSL HASKAHHRLH SSNNVSDLSN DSSPDQGYPD FPPSPDSWLG DSGSTNTTSA 
NNNANNNSSS SHNNNNSSGG GSGGVSVSTA PNPSAPGVHY XYSNLLLRYF EMQSRSLLLA 
AAQQQQQHQP HSSQL

Genular Protein ID: 2166736968

Symbol: Q9VJ00_DROME

Name: N/A

UniProtKB Accession Codes:

Q9VJ00

Database IDs:

AGR 1 ARBA 7 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CDD 3 CTD 1 DNASU 1 EMBL 10 EnsemblMetazoa 4 ExpressionAtlas 1 FlyBase 2 GO 8 Gene3D 2 GeneTree 1 GenomeRNAi 1 IntAct 1 InterPro 4 KEGG 1 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PROSITE 6 PROSITE-ProRule 2 Pfam 2 Proteomes 2 RefSeq 4 RuleBase 1 SAM 1 SMART 2 SMR 1 SUPFAM 3 UCSC 1 VEuPathDB 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

PubMed ID: 26109357

Title: Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.

PubMed ID: 26109357

DOI: .1534/g3.115.018929

PubMed ID: 26109356

Title: Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.

PubMed ID: 26109356

DOI: .1534/g3.115.018937

PubMed ID: 25589440

Title: The Release 6 reference sequence of the Drosophila melanogaster genome.

PubMed ID: 25589440

Sequence Information:

  • Length: 520
  • Mass: 58378
  • Checksum: F11AA8F8F017DCAD
  • Sequence:
    • MMQTLKPPPP LHHHHQHQHQ LQHPPQQQPH PHQQLQHPLQ QQQHLSAMDN HQQHQPHIHQ 
QQQQQQQLPP TPQASHLVGG QQQQQQHPHH NHLAVDQDDP NPELVLALIS RNRALEATIP 
KCGGCHELIL DRFILKVLER TWHAKCLQCS ECHGQLNDKC FARNGQLFCK EDFFKRYGTK 
CSACDMGIPP TQVVRRAQDN VYHLQCFLCA MCSRTLNTGD EFYLMEDRKL ICKRDYEEAK 
AKGLYLDGSL DGDQPNKRPR TTITAKQLET LKTAYNNSPK PARHVREQLS QDTGLDMRVV 
QVWFQNRRAK EKRLKKDAGR TRWSQYFRSM KGNCSPRTDK FLDKDELKVD YDSFSHHDLS 
NDSYSTVNLG LDEGASPHSI RGSYMHGSSS PSQYPPSSRS PPPVGQGHTF GSYPDNIVYT 
NIDQAVGSSL HASKAHHRLH SSNNVSDLSN DSSPDQGYPD FPPSPDSWLG DSGSTNTTSA 
NNNANNNSSS SHNNNNSSGG GSGGVSVSTA PNPSAPGVHY

Genular Protein ID: 993658551

Symbol: Q9VJ02_DROME

Name: N/A

UniProtKB Accession Codes:

Q9VJ02

Database IDs:

AGR 1 ARBA 7 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CDD 3 CTD 1 DNASU 1 EMBL 2 EnsemblMetazoa 1 ExpressionAtlas 1 FlyBase 2 GO 8 Gene3D 2 GeneTree 1 Genevisible 1 GenomeRNAi 1 InterPro 4 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PROSITE 6 PROSITE-ProRule 2 Pfam 2 PhylomeDB 1 Proteomes 2 RefSeq 1 RuleBase 1 SAM 1 SMART 2 SMR 1 SUPFAM 2 UCSC 1 VEuPathDB 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

Sequence Information:

  • Length: 440
  • Mass: 48970
  • Checksum: 47638F27327FB803
  • Sequence:
    • MELLKLMMFK SDFLSNGKCD DRVPPINLSQ LPEFLLSTIP KCGGCHELIL DRFILKVLER 
TWHAKCLQCS ECHGQLNDKC FARNGQLFCK EDFFKRYGTK CSACDMGIPP TQVVRRAQDN 
VYHLQCFLCA MCSRTLNTGD EFYLMEDRKL ICKRDYEEAK AKGLYLDGSL DGDQPNKRPR 
TTITAKQLET LKTAYNNSPK PARHVREQLS QDTGLDMRVV QVWFQNRRAK EKRLKKDAGR 
TRWSQYFRSM KGNCSPRTDK FLDKDELKVD YDSFSHHDLS NDSYSTVNLG LDEGASPHSI 
RGSYMHGSSS PSQYPPSSRS PPPVGQGHTF GSYPDNIVYT NIDQAVGSSL HASKAHHRLH 
SSNNVSDLSN DSSPDQGYPD FPPSPDSWLG DSGSTNTTSA NNNANNNSSS SHNNNNSSGG 
GSGGVSVSTA PNPSAPGVHY

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.