Details for: scrt

Gene ID: 38469

Symbol: scrt

Ensembl ID: FBgn0004880

Description: scratch

Associated with

  • Dna-binding transcription factor activity, rna polymerase ii-specific
    (GO:0000981)
  • Negative regulation of transcription by rna polymerase ii
    (GO:0000122)
  • Nucleus
    (GO:0005634)
  • Regulation of transcription by rna polymerase ii
    (GO:0006357)
  • Rna polymerase ii cis-regulatory region sequence-specific dna binding
    (GO:0000978)

Other Information

Genular Protein ID: 72034547

Symbol: Q9VZK2_DROME

Name: N/A

UniProtKB Accession Codes:

Q9VZK2 Q9Y144

Database IDs:

AGR 1 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CTD 1 ChiTaRS 1 DNASU 1 EMBL 6 EnsemblMetazoa 2 ExpressionAtlas 1 FlyBase 2 GO 5 Gene3D 1 GeneTree 1 GenomeRNAi 1 HOGENOM 1 InParanoid 1 IntAct 1 InterPro 2 KEGG 1 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PROSITE 3 PROSITE-ProRule 1 PaxDb 1 Pfam 2 Proteomes 2 RefSeq 2 SAM 1 SMART 1 SMR 1 STRING 1 SUPFAM 1 UCSC 1 VEuPathDB 1 eggNOG 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

PubMed ID: 26109357

Title: Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.

PubMed ID: 26109357

DOI: .1534/g3.115.018929

PubMed ID: 26109356

Title: Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.

PubMed ID: 26109356

DOI: .1534/g3.115.018937

PubMed ID: 25589440

Title: The Release 6 reference sequence of the Drosophila melanogaster genome.

PubMed ID: 25589440

Sequence Information:

  • Length: 653
  • Mass: 70775
  • Checksum: 15C27EE93F3FF45D
  • Sequence:
    • MPRCLIAKKW KAYPWLDRTE DTSNQQQQQE QSAPNSPREL EELHLKSRRS TLDDDEEIDV 
VGDKFLIKLE KQRTTADAAA AAATSSEAAT SHSSNSSNME ASATTTTSKC WGPSSPTAGT 
TAPSPPPHSP EAATRVAGNV YNGYTRELSP LHYTAYLPRM ESEITVIRAA ATALVAARTS 
GNGSGDQHLA AYQTPPSSTT SSPSCSPSGA GDRYSPLSSG QTSSERKCFS STGATLSLPP 
KKKDIYRPYS LDDKPAHGYR RRVPAEEDLH AAHAILDLSA STAFHPPTQP HQLQQQQQQQ 
QQQHQHHHSQ QQHLAPQQHH YLPLQQQQQQ QAHHTHLPTL EAHAHLRSTS SIAELAAAAS 
VVNEQRPASN ASSASSNHMP SSPSSNSSSS SSQVQNENSN TTNTNPDGDG CLQDGEHSGA 
SGASAKTVAY TYEAFFVSDG RSKRKHVADP AAAASGVPTP DQQKTKYTCS ECGKQYATSS 
NLSRHKQTHR SLDSQSAKKC HTCGKAYVSM PALAMHLLTH KLSHSCGVCG KLFSRPWLLQ 
GHLRSHTGEK PYGCAHCGKA FADRSNLRAH MQTHSVDKNF ECKRCHKTFA LKSYLNKHLE 
SACLKDEEEL MMSMSLSMHD SNSESGASMA SSPPHEFLER VKLEGSGGAT YAM

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.