Details for: TAF1B

Gene ID: 41242

Symbol: TAF1B

Ensembl ID: FBgn0037792

Description: TATA box-binding protein-associated factor RNA polymerase I subunit B

Associated with

  • Gene expression (transcription)
    (R-DME-74160)
  • Rna polymerase i promoter clearance
    (R-DME-73854)
  • Rna polymerase i promoter escape
    (R-DME-73772)
  • Rna polymerase i transcription
    (R-DME-73864)
  • Nucleolar large rrna transcription by rna polymerase i
    (GO:0042790)
  • Nucleolus
    (GO:0005730)
  • Rna polymerase i core factor complex
    (GO:0070860)
  • Rna polymerase i core promoter sequence-specific dna binding
    (GO:0001164)
  • Rna polymerase i preinitiation complex assembly
    (GO:0001188)
  • Rna polymerase transcription factor sl1 complex
    (GO:0005668)
  • Transcription by rna polymerase i
    (GO:0006360)

Other Information

Genular Protein ID: 3857270366

Symbol: TAF1B_DROME

Name: TATA box-binding protein-associated factor RNA polymerase I subunit B

UniProtKB Accession Codes:

Q9VH20 Q494H4 Q8MRI0

Database IDs:

AGR 1 AlphaFoldDB 1 Bgee 1 BioGRID 1 BioGRID-ORCS 1 CTD 1 ChEBI 4 DIP 1 DNASU 1 EMBL 4 EnsemblMetazoa 2 ExpressionAtlas 1 FlyBase 2 GO 7 GeneTree 1 Genevisible 1 GenomeRNAi 1 HOGENOM 1 InParanoid 1 IntAct 1 InterPro 3 KEGG 1 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PRO 1 PaxDb 1 Pfam 2 PhylomeDB 1 Proteomes 1 Reactome 1 RefSeq 2 SAM 1 STRING 1 SignaLink 1 UCSC 1 VEuPathDB 1 eggNOG 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537569

Title: A Drosophila full-length cDNA resource.

PubMed ID: 12537569

DOI: 10.1186/gb-2002-3-12-research0080

Sequence Information:

  • Length: 872
  • Mass: 101775
  • Checksum: BDC8BB7440FEC5B4
  • Sequence:
    • MEEVLETMQL ENMHCDVCEG TTFQEREGFY YCVECGTQKD QIRAVDITAE DNFDDTAAGR 
YTARTIRQKK DTEKEDEDDI TSWEFYNYVL RGFLQELLNM GAKPELKLMT LQVWAAYLDS 
MEVAFSKSNK TGLPKLNVRA LPIDARIIYN HKTFKKGKKG KKSTLTGDPN DERAKFRLWN 
RTKRNLDASG YRSHGGASES EGEQSLHLQW SMRARKSLKR HMPLKHLDKH SRDSKGSMSC 
HSLRPRVKQL HNFDRNIYCL NIIKLYVVLG IALNMVEDDI QLSDLLRFID EEHLTKRCML 
NYLPGNVAAK GKALLKDMEL SKMKDKVTNK LLRVNIACMS RFINLSEYQK PNLHSLAERY 
ILELALPPRL LKYVNSLLDL HPPTFFNAMT VHPYPRYEAR TMAYILYAMK LLFGLDDLKE 
RNISESAAKI NEKLLEVGGD EAPLLFVFTE WMEFVEMRKV IVSHYNQSFA RRFGVSTRTG 
CQVDDILAKE WKEKEQGETF GWMQGSAAMK RQHENLTHII ETMLKDHFGE SSKESMEKEH 
IEFQPSLTPA HSYFNRILLQ VSRSDGAKMK ITIPDHMKVD HSARNLDPFV LETTELSQYL 
SQHGLKLRVE ELACQEDIQN VGIFRPLTII RGDGREYRAN TEIKTETWIS ELKRKEKRPD 
FRFTQPTGTY GARYLKRITM RDARRVQLEI NNPFWDVTET PSFLLKLNDN EIPLDSLSSL 
QTFEEGTMDP LNIPLDLPRR NLEKILNPEG SDRASDQVAS DINDEPPSPE TLLLQVSNFD 
CWLLHGYMKR IRRHDKHELR QLFPCSFRWL LETCASTIGI VWEELYEELL IVEVMYHHSI 
RDWSNHRNYL CIQHNTQEKD IRTLARTYKE LW

Genular Protein ID: 2488447115

Symbol: A0A0B4KG32_DROME

Name: N/A

UniProtKB Accession Codes:

A0A0B4KG32

Database IDs:

AGR 1 ARBA 9 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CTD 1 DNASU 1 EMBL 2 EnsemblMetazoa 1 ExpressionAtlas 1 FlyBase 2 GO 4 GeneTree 1 GenomeRNAi 1 InterPro 2 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 Pfam 2 Proteomes 2 RefSeq 1 SAM 2 VEuPathDB 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

Sequence Information:

  • Length: 661
  • Mass: 77479
  • Checksum: 12EDB9F5B01E4D9C
  • Sequence:
    • MRARKSLKRH MPLKHLDKHS RDSKGSMSCH SLRPRVKQLH NFDRNIYCLN IIKLYVVLGI 
ALNMVEDDIQ LSDLLRFIDE EHLTKRCMLN YLPGNVAAKG KALLKDMELS KMKDKVTNKL 
LRVNIACMSR FINLSEYQKP NLHSLAERYI LELALPPRLL KYVNSLLDLH PPTFFNAMTV 
HPYPRYEART MAYILYAMKL LFGLDDLKER NISESAAKIN EKLLEVGGDE APLLFVFTEW 
MEFVEMRKVI VSHYNQSFAR RFGVSTRTGC QVDDILAKEW KEKEQGETFG WMQGSAAMKR 
QHENLTHIIE TMLKDHFGES SKESMEKEHI EFQPSLTPAH SYFNRILLQV SRSDGAKMKI 
TIPDHMKVDH SARNLDPFVL ETTELSQYLS QHGLKLRVEE LACQEDIQNV GIFRPLTIIR 
GDGREYRANT EIKTETWISE LKRKEKRPDF RFTQPTGTYG ARYLKRITMR DARRVQLEIN 
NPFWDVTETP SFLLKLNDNE IPLDSLSSLQ TFEEGTMDPL NIPLDLPRRN LEKILNPEGS 
DRASDQVASD INDEPPSPET LLLQVSNFDC WLLHGYMKRI RRHDKHELRQ LFPCSFRWLL 
ETCASTIGIV WEELYEELLI VEVMYHHSIR DWSNHRNYLC IQHNTQEKDI RTLARTYKEL 
W

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.