Details for: kn

Gene ID: 45318

Symbol: kn

Ensembl ID: FBgn0001319

Description: knot

Associated with

  • Anterior head segmentation
    (GO:0035288)
  • Blastoderm segmentation
    (GO:0007350)
  • Dendrite morphogenesis
    (GO:0048813)
  • Determination of muscle attachment site
    (GO:0016204)
  • Dna-binding transcription factor activity
    (GO:0003700)
  • Dna-binding transcription factor activity, rna polymerase ii-specific
    (GO:0000981)
  • Dna binding
    (GO:0003677)
  • Embryonic development via the syncytial blastoderm
    (GO:0001700)
  • Head segmentation
    (GO:0035287)
  • Imaginal disc-derived wing morphogenesis
    (GO:0007476)
  • Imaginal disc-derived wing vein specification
    (GO:0007474)
  • Innate immune response
    (GO:0045087)
  • Larval somatic muscle development
    (GO:0007526)
  • Muscle cell fate specification
    (GO:0042694)
  • Positive regulation of transcription by rna polymerase ii
    (GO:0045944)
  • Posterior head segmentation
    (GO:0035289)
  • Regulation of dendrite morphogenesis
    (GO:0048814)
  • Regulation of dna-templated transcription
    (GO:0006355)
  • Regulation of gene expression
    (GO:0010468)
  • Regulation of lamellocyte differentiation
    (GO:0035203)
  • Regulation of transcription by rna polymerase ii
    (GO:0006357)
  • Response to symbiont
    (GO:0009608)
  • Rna polymerase ii cis-regulatory region sequence-specific dna binding
    (GO:0000978)
  • Segment polarity determination
    (GO:0007367)
  • Specification of segmental identity, intercalary segment
    (GO:0035291)
  • Ventral cord development
    (GO:0007419)

Other Information

Genular Protein ID: 392762322

Symbol: COLL_DROME

Name: Transcription factor collier

UniProtKB Accession Codes:

P56721 Q8MS49 Q9V758

Database IDs:

AGR 1 AlphaFoldDB 1 Bgee 1 BioGRID 1 BioGRID-ORCS 1 CDD 2 CTD 1 EMBL 3 EnsemblMetazoa 2 ExpressionAtlas 1 FlyBase 1 GO 26 Gene3D 3 GeneTree 1 GenomeRNAi 1 HOGENOM 1 InParanoid 1 IntAct 1 InterPro 9 KEGG 1 NCBI Taxonomy 1 PANTHER 2 PRO 1 PROSITE 1 PaxDb 1 Pfam 3 PhylomeDB 1 Proteomes 1 RefSeq 2 SMART 1 SMR 1 STRING 1 SUPFAM 1 SignaLink 1 UCSC 1 VEuPathDB 1 eggNOG 1

Citations:

PubMed ID: 8793297

Title: Collier, a novel regulator of Drosophila head development, is expressed in a single mitotic domain.

PubMed ID: 8793297

DOI: 10.1016/s0960-9822(09)00452-7

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537569

Title: A Drosophila full-length cDNA resource.

PubMed ID: 12537569

DOI: 10.1186/gb-2002-3-12-research0080

PubMed ID: 10375526

Title: The COE transcription factor Collier is a mediator of short-range Hedgehog-induced patterning of the Drosophila wing.

PubMed ID: 10375526

DOI: 10.1016/s0960-9822(99)80285-1

PubMed ID: 10068642

Title: Requirement for the Drosophila COE transcription factor Collier in formation of an embryonic muscle: transcriptional response to notch signalling.

PubMed ID: 10068642

DOI: 10.1242/dev.126.7.1495

PubMed ID: 10477305

Title: Head versus trunk patterning in the Drosophila embryo; collier requirement for formation of the intercalary segment.

PubMed ID: 10477305

DOI: 10.1242/dev.126.19.4385

Sequence Information:

  • Length: 575
  • Mass: 62494
  • Checksum: D15144D95BDCDFBC
  • Sequence:
    • MEWGRKLYPS AVSGPRSAGG LMFGLPPTAA VDMNQPRGPM TSLKEEPLGS RWAMQPVVDQ 
SNLGIGRAHF EKQPPSNLRK SNFFHFVIAL YDRAGQPIEI ERTAFIGFIE KDSESDATKT 
NNGIQYRLQL LYANGARQEQ DIFVRLIDSV TKQAIIYEGQ DKNPEMCRVL LTHEVMCSRC 
CDKKSCGNRN ETPSDPVIID RFFLKFFLKC NQNCLKNAGN PRDMRRFQVV ISTQVAVDGP 
LLAISDNMFV HNNSKHGRRA KRLDTTEGTG NTSLSISGHP LAPDSTYDGL YPPLPVATPC 
IKAISPSEGW TTGGATVIIV GDNFFDGLQV VFGTMLVWSE LITSHAIRVQ TPPRHIPGVV 
EVTLSYKSKQ FCKGSPGRFV YVSALNEPTI DYGFQRLQKL IPRHPGDPEK LQKEIILKRA 
ADLVEALYSM PRSPGGSTGF NSYAGQLAVS VQDGSGQWTE DDYQRAQSSS VSPRGGYCSS 
ASTPHSSGGS YGATAASAAV AATANGYAPA PNMGTLSSSP GSVFNSTSMS AVSSTWHQAF 
VQHHHAATAH PHHHYPHPHQ PWHNPAVSAA TAAAV

Genular Protein ID: 4083001045

Symbol: A1Z9V2_DROME

Name: N/A

UniProtKB Accession Codes:

A1Z9V2

Database IDs:

AGR 1 ARBA 9 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CDD 2 CTD 1 EMBL 2 EnsemblMetazoa 1 ExpressionAtlas 1 FlyBase 2 GO 6 Gene3D 3 GeneTree 1 InterPro 9 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PROSITE 1 Pfam 3 Proteomes 2 RefSeq 1 RuleBase 1 SAM 1 SMART 2 SMR 1 SUPFAM 1 UCSC 1 VEuPathDB 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

Sequence Information:

  • Length: 556
  • Mass: 60417
  • Checksum: D62FB96B96AAD19C
  • Sequence:
    • MEWGRKLYPS AVSGPRSAGG LMFGLPPTAA VDMNQPRGPM TSLKEEPLGS RWAMQPVVDQ 
SNLGIGRAHF EKQPPSNLRK SNFFHFVIAL YDRAGQPIEI ERTAFIGFIE KDSESDATKT 
NNGIQYRLQL LYANGARQEQ DIFVRLIDSV TKQAIIYEGQ DKNPEMCRVL LTHEVMCSRC 
CDKKSCGNRN ETPSDPVIID RFFLKFFLKC NQNCLKNAGN PRDMRRFQVV ISTQVAVDGP 
LLAISDNMFV HNNSKHGRRA KRLDTTEGTG NTSLSISGHP LAPDSTYDGL YPPLPVATPC 
IKAISPSEGW TTGGATVIIV GDNFFDGLQV VFGTMLVWSE LITSHAIRVQ TPPRHIPGVV 
EVTLSYKSKQ FCKGSPGRFV YVSLNEPTID YGFQRLQKLI PRHPGDPEKL QKEIILKRAA 
DLVEALYSMP RSPGGSTGFN SYAGQLAVSV QDGSGQWTED DYQRAQSSSV SPRGGYCSSA 
STPHSSGGSY GATAASAAVA ATANGYAPAP NMGTLSSSPG SVFNSTSRVS SLSFNPFALP 
TCNTQGYSTQ LVTSTK

Genular Protein ID: 3031519710

Symbol: A8DYD9_DROME

Name: N/A

UniProtKB Accession Codes:

A8DYD9

Database IDs:

AGR 1 ARBA 9 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CDD 2 CTD 1 EMBL 2 EnsemblMetazoa 1 ExpressionAtlas 1 FlyBase 2 GO 6 Gene3D 3 GeneTree 1 InterPro 9 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PROSITE 1 Pfam 3 PhylomeDB 1 Proteomes 2 RefSeq 1 RuleBase 1 SAM 1 SMART 2 SMR 1 SUPFAM 1 UCSC 1 VEuPathDB 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

Sequence Information:

  • Length: 689
  • Mass: 74800
  • Checksum: E3A585B5F9EF0E5A
  • Sequence:
    • MVTEQNADRR LLGKIIPSRF ERFIIWPSQL GACPGIPGTI NHPSPDPSPS PSGGQAALQL 
VDILEWKKLL RAGLGGDVAA YADLHQHSHS HHPNPHPHPH PHPFATDGFK LRSEEPVPGF 
SSASPWPTLE LGMEWGRKLY PSAVSGPRSA GGLMFGLPPT AAVDMNQPRG PMTSLKEEPL 
GSRWAMQPVV DQSNLGIGRA HFEKQPPSNL RKSNFFHFVI ALYDRAGQPI EIERTAFIGF 
IEKDSESDAT KTNNGIQYRL QLLYANGARQ EQDIFVRLID SVTKQAIIYE GQDKNPEMCR 
VLLTHEVMCS RCCDKKSCGN RNETPSDPVI IDRFFLKFFL KCNQNCLKNA GNPRDMRRFQ 
VVISTQVAVD GPLLAISDNM FVHNNSKHGR RAKRLDTTEG TGNTSLSISG HPLAPDSTYD 
GLYPPLPVAT PCIKAISPSE GWTTGGATVI IVGDNFFDGL QVVFGTMLVW SELITSHAIR 
VQTPPRHIPG VVEVTLSYKS KQFCKGSPGR FVYVSALNEP TIDYGFQRLQ KLIPRHPGDP 
EKLQKEIILK RAADLVEALY SMPRSPGGST GFNSYAGQLA VSVQDGSGQW TEDDYQRAQS 
SSVSPRGGYC SSASTPHSSG GSYGATAASA AVAATANGYA PAPNMGTLSS SPGSVFNSTS 
RVSSLSFNPF ALPTCNTQGY STQLVTSTK

Genular Protein ID: 347237066

Symbol: V5LWW0_DROME

Name: N/A

UniProtKB Accession Codes:

V5LWW0

Database IDs:

ARBA 9 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CDD 2 CTD 1 EMBL 2 EnsemblMetazoa 1 ExpressionAtlas 1 GO 6 Gene3D 3 GeneTree 1 HOGENOM 1 InterPro 9 NCBI Taxonomy 1 PANTHER 2 PROSITE 1 Pfam 3 PhylomeDB 1 RefSeq 1 RuleBase 1 SAM 1 SMART 2 SMR 1 SUPFAM 1 VEuPathDB 1

Sequence Information:

  • Length: 557
  • Mass: 60488
  • Checksum: 16E4EFC1AC05A3BC
  • Sequence:
    • MEWGRKLYPS AVSGPRSAGG LMFGLPPTAA VDMNQPRGPM TSLKEEPLGS RWAMQPVVDQ 
SNLGIGRAHF EKQPPSNLRK SNFFHFVIAL YDRAGQPIEI ERTAFIGFIE KDSESDATKT 
NNGIQYRLQL LYANGARQEQ DIFVRLIDSV TKQAIIYEGQ DKNPEMCRVL LTHEVMCSRC 
CDKKSCGNRN ETPSDPVIID RFFLKFFLKC NQNCLKNAGN PRDMRRFQVV ISTQVAVDGP 
LLAISDNMFV HNNSKHGRRA KRLDTTEGTG NTSLSISGHP LAPDSTYDGL YPPLPVATPC 
IKAISPSEGW TTGGATVIIV GDNFFDGLQV VFGTMLVWSE LITSHAIRVQ TPPRHIPGVV 
EVTLSYKSKQ FCKGSPGRFV YVSALNEPTI DYGFQRLQKL IPRHPGDPEK LQKEIILKRA 
ADLVEALYSM PRSPGGSTGF NSYAGQLAVS VQDGSGQWTE DDYQRAQSSS VSPRGGYCSS 
ASTPHSSGGS YGATAASAAV AATANGYAPA PNMGTLSSSP GSVFNSTSRV SSLSFNPFAL 
PTCNTQGYST QLVTSTK

Genular Protein ID: 974929824

Symbol: A0A0B4KFQ1_DROME

Name: N/A

UniProtKB Accession Codes:

A0A0B4KFQ1

Database IDs:

AGR 1 ARBA 9 AlphaFoldDB 1 Bgee 1 BioGRID-ORCS 1 CDD 2 CTD 1 EMBL 2 EnsemblMetazoa 1 ExpressionAtlas 1 FlyBase 2 GO 6 Gene3D 3 GeneTree 1 InterPro 9 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PROSITE 1 Pfam 3 Proteomes 2 RefSeq 1 RuleBase 1 SAM 1 SMART 2 SMR 1 SUPFAM 1 VEuPathDB 1

Citations:

PubMed ID: 10731132

Title: The genome sequence of Drosophila melanogaster.

PubMed ID: 10731132

DOI: 10.1126/science.287.5461.2185

PubMed ID: 12537568

Title: Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

PubMed ID: 12537568

PubMed ID: 12537572

Title: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

PubMed ID: 12537572

DOI: 10.1186/gb-2002-3-12-research0083

PubMed ID: 12537573

Title: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

PubMed ID: 12537573

PubMed ID: 12537574

Title: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

PubMed ID: 12537574

PubMed ID: 16110336

Title: Combined evidence annotation of transposable elements in genome sequences.

PubMed ID: 16110336

DOI: 10.1371/journal.pcbi.0010022

PubMed ID: 17569856

Title: The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

PubMed ID: 17569856

DOI: 10.1126/science.1139815

PubMed ID: 17569867

Title: Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

PubMed ID: 17569867

DOI: 10.1126/science.1139816

Sequence Information:

  • Length: 524
  • Mass: 57503
  • Checksum: B76DF3C1E0FE4A07
  • Sequence:
    • MTAGFVHSAA ANQHSHPHGH PPHHHLDNHI QRQDNPNQNH NHNQTLDNKT MRCDTSLGIG 
RAHFEKQPPS NLRKSNFFHF VIALYDRAGQ PIEIERTAFI GFIEKDSESD ATKTNNGIQY 
RLQLLYANGA RQEQDIFVRL IDSVTKQAII YEGQDKNPEM CRVLLTHEVM CSRCCDKKSC 
GNRNETPSDP VIIDRFFLKF FLKCNQNCLK NAGNPRDMRR FQVAVDGPLL AISDNMFVHN 
NSKHGRRAKR LDTTEGLYPP LPVATPCIKA ISPSEGWTTG GATVIIVGDN FFDGLQVVFG 
TMLVWSELIT SHAIRVQTPP RHIPGVVEVT LSYKSKQFCK GSPGRFVYVS LNEPTIDYGF 
QRLQKLIPRH PGDPEKLQKE IILKRAADLV EALYSMPSRS PGGSTGFNSY AGQLAVSVQD 
GSGQWTEDDY QRAQSSSVSP RGGYCSSAST PHSSGGSYGA TAASAAVAAT ANGYAPAPNM 
GTLSSSPGSV FNSTSRVSSL SFNPFALPTC NTQGYSTQLV TSTK

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.