Details for: ATP5MC1

Gene ID: 516

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: ATP5MC1

Ensembl ID: ENSG00000159199

Description: ATP synthase membrane subunit c locus 1

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • stem cell CL0000034
    CSI 81.9
    rCSI 78.97%
    PRS 4.28
  • intestine goblet cell CL0019031
    CSI 74.77
    rCSI 66.36%
    PRS 6.94
  • plasmablast CL0000980
    CSI 73.75
    rCSI 58.02%
    PRS 8.3
  • granulocyte monocyte progenitor cell CL0000557
    CSI 73.48
    rCSI 63.62%
    PRS 7.74
  • transit amplifying cell of colon CL0009011
    CSI 73.28
    rCSI 86.07%
    PRS 8.3
  • common myeloid progenitor CL0000049
    CSI 70.61
    rCSI 57.09%
    PRS 6.85
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 63.1
    rCSI 56.99%
    PRS 6.14
  • intestinal epithelial cell CL0002563
    CSI 61.89
    rCSI 64.68%
    PRS 7.3
  • fallopian tube secretory epithelial cell CL4030006
    CSI 59.15
    rCSI 56.94%
    PRS 7.19
  • keratinocyte CL0000312
    CSI 58.89
    rCSI 49.36%
    PRS 8.31
  • colon epithelial cell CL0011108
    CSI 52.83
    rCSI 55.34%
    PRS 6.46
  • pancreatic D cell CL0000173
    CSI 48.67
    rCSI 47.87%
    PRS 7.53
  • M cell of gut CL0000682
    CSI 47.37
    rCSI 50.34%
    PRS 12.43
  • mucous neck cell CL0000651
    CSI 45.79
    rCSI 66%
    PRS 11.25
  • promyelocyte CL0000836
    CSI 44.68
    rCSI 64.44%
    PRS 9.7
  • pancreatic A cell CL0000171
    CSI 44.06
    rCSI 46.16%
    PRS 7.38
  • enterocyte CL0000584
    CSI 43.64
    rCSI 70.36%
    PRS 11.22
  • common dendritic progenitor CL0001029
    CSI 42.4
    rCSI 53.22%
    PRS 8.85
  • transit amplifying cell CL0009010
    CSI 42.29
    rCSI 64.68%
    PRS 11.34
  • peripheral nervous system neuron CL2000032
    CSI 39.76
    rCSI 54.17%
    PRS 6.23
  • placental villous trophoblast CL2000060
    CSI 39.35
    rCSI 60.81%
    PRS 6.53
  • colonocyte CL1000347
    CSI 34.96
    rCSI 50.12%
    PRS 9.57
  • colon goblet cell CL0009039
    CSI 33.08
    rCSI 78.63%
    PRS 10.45
  • foveolar cell of stomach CL0002179
    CSI 33.03
    rCSI 70.3%
    PRS 11.25
  • goblet cell CL0000160
    CSI 31.51
    rCSI 29.78%
    PRS 7.27
  • hematopoietic stem cell CL0000037
    CSI 28.81
    rCSI 19.15%
    PRS 8.29
  • kidney epithelial cell CL0002518
    CSI 27.05
    rCSI 51.63%
    PRS 16.83
  • enteroendocrine cell CL0000164
    CSI 26.98
    rCSI 36.87%
    PRS 7.7
  • intestinal crypt stem cell of small intestine CL0009017
    CSI 26.69
    rCSI 71.94%
    PRS 8.98
  • promonocyte CL0000559
    CSI 26.42
    rCSI 45.26%
    PRS 9.33
  • respiratory suprabasal cell CL4033048
    CSI 25.43
    rCSI 32.61%
    PRS 8.02
  • epithelial cell CL0000066
    CSI 21.78
    rCSI 33.46%
    PRS 10.01
  • epithelial cell of lung CL0000082
    CSI 20.99
    rCSI 17.4%
    PRS 6.6
  • microcirculation associated smooth muscle cell CL0008035
    CSI 20.52
    rCSI 59.4%
    PRS 7.88
  • type L enteroendocrine cell CL0002279
    CSI 19.82
    rCSI 37.2%
    PRS 13.77
  • hepatocyte CL0000182
    CSI 19.41
    rCSI 34.75%
    PRS 6.56
  • paneth cell of epithelium of small intestine CL1000343
    CSI 19.24
    rCSI 53.92%
    PRS 10.86
  • type B pancreatic cell CL0000169
    CSI 18.56
    rCSI 41.09%
    PRS 6.44
  • ciliated epithelial cell CL0000067
    CSI 18.39
    rCSI 16.17%
    PRS 5.02
  • kidney loop of Henle thin descending limb epithelial cell CL1001111
    CSI 18.29
    rCSI 25.93%
    PRS 6.57
  • early lymphoid progenitor CL0000936
    CSI 17.73
    rCSI 15.57%
    PRS 7.8
  • mucus secreting cell CL0000319
    CSI 17.25
    rCSI 27.4%
    PRS 9.03
  • transit amplifying cell of small intestine CL0009012
    CSI 16.83
    rCSI 73.87%
    PRS 13.12
  • renal beta-intercalated cell CL0002201
    CSI 16.74
    rCSI 39.91%
    PRS 8.67
  • progenitor cell CL0011026
    CSI 16.58
    rCSI 35.26%
    PRS 13.04
  • large pre-B-II cell CL0000957
    CSI 16.56
    rCSI 47.27%
    PRS 12.39
  • ON-bipolar cell CL0000749
    CSI 16.52
    rCSI 24.55%
    PRS 8.79
  • ventricular cardiac muscle cell CL2000046
    CSI 16.31
    rCSI 55.88%
    PRS 30.19
  • Hofbauer cell CL3000001
    CSI 16.22
    rCSI 30.63%
    PRS 8.63
  • myeloid leukocyte CL0000766
    CSI 15.94
    rCSI 14.71%
    PRS 7.07
  • glandular epithelial cell CL0000150
    CSI 15.5
    rCSI 40.8%
    PRS 13.61
  • pancreatic ductal cell CL0002079
    CSI 15.2
    rCSI 29.56%
    PRS 7.07
  • neural crest cell CL0011012
    CSI 15.07
    rCSI 11.91%
    PRS 4.79
  • multi-ciliated epithelial cell CL0005012
    CSI 15.04
    rCSI 15.01%
    PRS 5.95
  • tracheal goblet cell CL1000329
    CSI 14.92
    rCSI 32.56%
    PRS 14.18
  • acinar cell CL0000622
    CSI 14.54
    rCSI 21.32%
    PRS 9.16
  • forebrain radial glial cell CL0013000
    CSI 14.52
    rCSI 46.58%
    PRS 10.42
  • lung secretory cell CL1000272
    CSI 13.57
    rCSI 33.58%
    PRS 6.44
  • renal alpha-intercalated cell CL0005011
    CSI 13.42
    rCSI 17.94%
    PRS 9.3
  • T-helper 17 cell CL0000899
    CSI 12.94
    rCSI 10.28%
    PRS 12.29
  • pancreatic acinar cell CL0002064
    CSI 12.9
    rCSI 17.15%
    PRS 7.55
  • hematopoietic precursor cell CL0008001
    CSI 12.41
    rCSI 12.77%
    PRS 11.3
  • respiratory hillock cell CL4030023
    CSI 12.34
    rCSI 22%
    PRS 11.97
  • plasma cell CL0000786
    CSI 12.31
    rCSI 16.14%
    PRS 35.25
  • enteric smooth muscle cell CL0002504
    CSI 12.21
    rCSI 17.42%
    PRS 7.84
  • extravillous trophoblast CL0008036
    CSI 12.1
    rCSI 14.97%
    PRS 6.09
  • retinal cone cell CL0000573
    CSI 11.7
    rCSI 18.83%
    PRS 5.32
  • fraction A pre-pro B cell CL0002045
    CSI 11.53
    rCSI 13.2%
    PRS 14.43
  • perivascular cell CL4033054
    CSI 11.33
    rCSI 15.49%
    PRS 7.91
  • intestinal crypt stem cell of colon CL0009043
    CSI 11.26
    rCSI 84.6%
    PRS 12.95
  • epithelial cell of proximal tubule CL0002306
    CSI 11.2
    rCSI 27.35%
    PRS 7.06
  • enterocyte of epithelium of large intestine CL0002071
    CSI 11.17
    rCSI 58.66%
    PRS 13.26
  • primitive red blood cell CL0002355
    CSI 11.16
    rCSI 60.23%
    PRS 13.41
  • retina horizontal cell CL0000745
    CSI 11.15
    rCSI 16.99%
    PRS 6.51
  • pancreatic stellate cell CL0002410
    CSI 11.1
    rCSI 64.61%
    PRS 10.49
  • Cajal-Retzius cell CL0000695
    CSI 10.99
    rCSI 86.11%
    PRS 15.99
  • pancreatic PP cell CL0002275
    CSI 10.8
    rCSI 42.98%
    PRS 12.3
  • mammary gland epithelial cell CL0002327
    CSI 10.76
    rCSI 37.75%
    PRS 12.69
  • elicited macrophage CL0000861
    CSI 10.71
    rCSI 9.83%
    PRS 7.91
  • ionocyte CL0005006
    CSI 10.65
    rCSI 11.41%
    PRS 6.39
  • tuft cell of colon CL0009041
    CSI 10.11
    rCSI 23.55%
    PRS 16.17
  • erythroid progenitor cell CL0000038
    CSI 9.87
    rCSI 56.6%
    PRS 10.94
  • pro-B cell CL0000826
    CSI 9.82
    rCSI 8.13%
    PRS 6.97
  • Langerhans cell CL0000453
    CSI 9.76
    rCSI 14.9%
    PRS 12.22
  • double negative thymocyte CL0002489
    CSI 9.66
    rCSI 6.72%
    PRS 8.14
  • naive thymus-derived CD8-positive, alpha-beta T cell CL0000900
    CSI 9.63
    rCSI 6.76%
    PRS 19.94
  • germinal center B cell CL0000844
    CSI 9.52
    rCSI 28.4%
    PRS 18.28
  • cerebral cortex GABAergic interneuron CL0010011
    CSI 9.12
    rCSI 26.92%
    PRS 8.73
  • memory B cell CL0000787
    CSI 9.03
    rCSI 8.92%
    PRS 29.41
  • pancreatic epsilon cell CL0005019
    CSI 9.01
    rCSI 42%
    PRS 17.16
  • cardiac muscle cell CL0000746
    CSI 8.84
    rCSI 12.69%
    PRS 5.63
  • muscle cell CL0000187
    CSI 8.8
    rCSI 18.06%
    PRS 16.77
  • retinal rod cell CL0000604
    CSI 8.8
    rCSI 15.5%
    PRS 7.14
  • club cell CL0000158
    CSI 8.67
    rCSI 12.7%
    PRS 8.22
  • naive thymus-derived CD4-positive, alpha-beta T cell CL0000895
    CSI 8.53
    rCSI 10.72%
    PRS 35.01
  • effector CD8-positive, alpha-beta T cell CL0001050
    CSI 8.43
    rCSI 6.41%
    PRS 9.23
  • duct epithelial cell CL0000068
    CSI 8.42
    rCSI 12.32%
    PRS 7.36
  • enteroendocrine cell of colon CL0009042
    CSI 8.33
    rCSI 39.05%
    PRS 19.09
  • secretory cell CL0000151
    CSI 8.15
    rCSI 8.51%
    PRS 7.14
  • plasmacytoid dendritic cell, human CL0001058
    CSI 8.06
    rCSI 5.62%
    PRS 7.34
  • CD14-positive, CD16-positive monocyte CL0002397
    CSI -19.6
    rCSI -25.7%
    PRS 9.8%
  • CD4-positive, CD25-positive, alpha-beta regulatory T cell CL0000792
    CSI -7.6
    rCSI -7.5%
    PRS 11.1%
  • pvalb GABAergic cortical interneuron CL4023018
    CSI -6.6
    rCSI -8.2%
    PRS 3.8%
  • astrocyte of the cerebral cortex CL0002605
    CSI -3.9
    rCSI -8.7%
    PRS 4.3%
  • effector CD4-positive, alpha-beta T cell CL0001044
    CSI -3.9
    rCSI -11.1%
    PRS 10.1%
  • pulmonary artery endothelial cell CL1001568
    CSI -3.8
    rCSI -5.2%
    PRS 10.7%
  • vascular associated smooth muscle cell CL0000359
    CSI -3.6
    rCSI -11.6%
    PRS 8.5%
  • lung neuroendocrine cell CL1000223
    CSI -3.3
    rCSI -4.9%
    PRS 8.0%
  • group 3 innate lymphoid cell CL0001071
    CSI -2.8
    rCSI -2.1%
    PRS 7.2%
  • L6b glutamatergic cortical neuron CL4023038
    CSI -2.8
    rCSI -8.7%
    PRS 4.4%
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI -2.7
    rCSI -4.5%
    PRS 4.1%
  • mononuclear phagocyte CL0000113
    CSI -1.7
    rCSI -3.8%
    PRS 7.7%
  • near-projecting glutamatergic cortical neuron CL4023012
    CSI -1.1
    rCSI -4.2%
    PRS 4.2%
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI -0.8
    rCSI -4.7%
    PRS 4.3%
  • cerebral cortex endothelial cell CL1001602
    CSI -0.7
    rCSI -1.3%
    PRS 5.3%
  • effector memory CD8-positive, alpha-beta T cell CL0000913
    CSI -0.7
    rCSI -0.7%
    PRS 10.9%
  • CD8-positive, alpha-beta cytotoxic T cell CL0000794
    CSI -0.7
    rCSI -0.8%
    PRS 12.1%
  • serous secreting cell CL0000313
    CSI -0.4
    rCSI -2.2%
    PRS 32.3%
  • uterine smooth muscle cell CL0002601
    CSI 0.0
    rCSI 0.0%
    PRS 47.0%
  • basophil CL0000767
    CSI 0.1
    rCSI 0.2%
    PRS 15.0%
  • cytotoxic T cell CL0000910
    CSI 0.1
    rCSI 0.8%
    PRS 10.6%
  • regular ventricular cardiac myocyte CL0002131
    CSI 0.2
    rCSI 1.0%
    PRS 5.7%
  • retinal blood vessel endothelial cell CL0002585
    CSI 0.2
    rCSI 0.3%
    PRS 7.6%
  • chondrocyte CL0000138
    CSI 0.2
    rCSI 0.3%
    PRS 6.2%
  • osteoblast CL0000062
    CSI 0.2
    rCSI 4.8%
    PRS 55.2%
  • lung microvascular endothelial cell CL2000016
    CSI 0.2
    rCSI 4.3%
    PRS 24.6%
  • group 2 innate lymphoid cell CL0001069
    CSI 0.3
    rCSI 1.5%
    PRS 24.5%
  • cerebellar granule cell CL0001031
    CSI 0.4
    rCSI 0.5%
    PRS 6.8%
  • mesenchymal lymphangioblast CL0005021
    CSI 0.4
    rCSI 10.7%
    PRS 36.6%
  • cord blood hematopoietic stem cell CL2000095
    CSI 0.4
    rCSI 7.9%
    PRS 51.5%
  • macroglial cell CL0000126
    CSI 0.5
    rCSI 1.2%
    PRS 11.2%
  • retinal bipolar neuron CL0000748
    CSI 0.5
    rCSI 0.9%
    PRS 5.2%
  • vasa recta descending limb cell CL1001285
    CSI 0.5
    rCSI 3.9%
    PRS 30.9%
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 0.5
    rCSI 1.3%
    PRS 4.0%
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 0.6
    rCSI 1.1%
    PRS 4.1%
  • podocyte CL0000653
    CSI 0.6
    rCSI 2.7%
    PRS 6.9%
  • myelocyte CL0002193
    CSI 0.6
    rCSI 4.2%
    PRS 23.8%
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 0.7
    rCSI 2.0%
    PRS 4.8%
  • small intestine goblet cell CL1000495
    CSI 0.7
    rCSI 1.4%
    PRS 9.4%
  • class switched memory B cell CL0000972
    CSI 0.7
    rCSI 0.6%
    PRS 11.8%
  • intermediate monocyte CL0002393
    CSI 0.7
    rCSI 1.1%
    PRS 6.9%
  • cardiac endothelial cell CL0010008
    CSI 0.8
    rCSI 3.1%
    PRS 6.9%
  • sst GABAergic cortical interneuron CL4023017
    CSI 0.8
    rCSI 1.0%
    PRS 4.3%
  • lung pericyte CL0009089
    CSI 0.8
    rCSI 2.2%
    PRS 8.3%
  • tendon cell CL0000388
    CSI 0.9
    rCSI 2.2%
    PRS 21.0%
  • myoepithelial cell CL0000185
    CSI 0.9
    rCSI 2.3%
    PRS 8.7%
  • prostate gland microvascular endothelial cell CL2000059
    CSI 0.9
    rCSI 22.0%
    PRS 25.9%
  • natural T-regulatory cell CL0000903
    CSI 0.9
    rCSI 1.8%
    PRS 19.8%
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 1.0
    rCSI 3.4%
    PRS 3.8%
  • myeloid dendritic cell CL0000782
    CSI 1.0
    rCSI 1.4%
    PRS 10.3%
  • acinar cell of salivary gland CL0002623
    CSI 1.0
    rCSI 23.3%
    PRS 11.3%
  • respiratory epithelial cell CL0002368
    CSI 1.1
    rCSI 6.7%
    PRS 23.2%
  • non-classical monocyte CL0000875
    CSI 1.1
    rCSI 1.8%
    PRS 23.0%
  • megakaryocyte CL0000556
    CSI 1.1
    rCSI 4.9%
    PRS 12.9%
  • interneuron CL0000099
    CSI 1.2
    rCSI 2.3%
    PRS 5.1%
  • brush cell of tracheobronchial tree CL0002075
    CSI 1.2
    rCSI 3.5%
    PRS 11.3%
  • hepatic stellate cell CL0000632
    CSI 1.2
    rCSI 4.5%
    PRS 6.0%
  • primordial germ cell CL0000670
    CSI 1.2
    rCSI 6.1%
    PRS 45.4%
  • cerebral cortex neuron CL0010012
    CSI 1.3
    rCSI 5.2%
    PRS 7.7%
  • stromal cell CL0000499
    CSI 1.4
    rCSI 3.8%
    PRS 10.1%
  • amacrine cell CL0000561
    CSI 1.5
    rCSI 4.2%
    PRS 5.8%
  • kidney loop of Henle epithelial cell CL1000909
    CSI 1.5
    rCSI 30.8%
    PRS 51.1%
  • sncg GABAergic cortical interneuron CL4023015
    CSI 1.5
    rCSI 2.4%
    PRS 4.5%
  • mature B cell CL0000785
    CSI 1.5
    rCSI 1.3%
    PRS 8.6%
  • CD14-positive, CD16-negative classical monocyte CL0002057
    CSI 1.5
    rCSI 9.3%
    PRS 16.2%
  • Kupffer cell CL0000091
    CSI 1.5
    rCSI 3.5%
    PRS 6.8%
  • mesenchymal cell CL0008019
    CSI 1.6
    rCSI 4.0%
    PRS 7.1%
  • VIP GABAergic cortical interneuron CL4023016
    CSI 1.6
    rCSI 1.9%
    PRS 4.1%
  • midzonal region hepatocyte CL0019028
    CSI 1.6
    rCSI 3.8%
    PRS 11.7%
  • stromal cell of ovary CL0002132
    CSI 1.6
    rCSI 4.4%
    PRS 11.5%
  • CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell CL0000915
    CSI 1.6
    rCSI 7.4%
    PRS 25.9%
  • nasal mucosa goblet cell CL0002480
    CSI 1.7
    rCSI 1.9%
    PRS 10.3%
  • Merkel cell CL0000242
    CSI 1.7
    rCSI 39.5%
    PRS 47.8%
  • renal intercalated cell CL0005010
    CSI 1.7
    rCSI 15.3%
    PRS 53.7%
  • OFF-bipolar cell CL0000750
    CSI 1.7
    rCSI 2.4%
    PRS 11.9%
  • brush cell CL0002204
    CSI 1.8
    rCSI 3.5%
    PRS 19.6%
  • ciliated columnar cell of tracheobronchial tree CL0002145
    CSI 1.8
    rCSI 4.1%
    PRS 7.3%
  • endothelial cell of lymphatic vessel CL0002138
    CSI 1.8
    rCSI 3.6%
    PRS 22.0%
  • neuroendocrine cell CL0000165
    CSI 1.8
    rCSI 7.1%
    PRS 14.9%
  • lung macrophage CL1001603
    CSI 2.0
    rCSI 4.5%
    PRS 7.9%
  • professional antigen presenting cell CL0000145
    CSI 2.0
    rCSI 6.9%
    PRS 30.1%
  • effector memory CD8-positive, alpha-beta T cell, terminally differentiated CL0001062
    CSI 2.0
    rCSI 10.1%
    PRS 9.1%
  • vein endothelial cell of respiratory system CL4033008
    CSI 2.1
    rCSI 14.2%
    PRS 13.8%
  • epithelial cell of urethra CL1000296
    CSI 2.1
    rCSI 53.2%
    PRS 24.2%
  • skin fibroblast CL0002620
    CSI 2.1
    rCSI 1.8%
    PRS 11.5%
  • cell of skeletal muscle CL0000188
    CSI 2.1
    rCSI 23.2%
    PRS 42.5%
  • neural progenitor cell CL0011020
    CSI 2.2
    rCSI 9.7%
    PRS 7.0%
  • mesenchymal stem cell CL0000134
    CSI 2.2
    rCSI 24.5%
    PRS 12.8%
  • CD14-positive monocyte CL0001054
    CSI 2.3
    rCSI 2.8%
    PRS 10.1%
  • adipocyte CL0000136
    CSI 2.3
    rCSI 2.9%
    PRS 7.9%
  • choroid plexus epithelial cell CL0000706
    CSI 2.3
    rCSI 3.7%
    PRS 5.4%
  • CD8-positive, alpha-beta thymocyte CL0000811
    CSI 2.3
    rCSI 3.6%
    PRS 17.8%
  • blood vessel smooth muscle cell CL0019018
    CSI 2.3
    rCSI 18.6%
    PRS 7.3%
  • tracheobronchial smooth muscle cell CL0019019
    CSI 2.3
    rCSI 4.1%
    PRS 9.2%
  • pre-conventional dendritic cell CL0002010
    CSI 2.4
    rCSI 31.2%
    PRS 24.3%
  • IgM plasma cell CL0000986
    CSI 2.4
    rCSI 10.7%
    PRS 36.3%
  • pluripotent stem cell CL0002248
    CSI 2.5
    rCSI 74.7%
    PRS 16.8%
  • glial cell CL0000125
    CSI 2.5
    rCSI 9.6%
    PRS 7.4%
  • CD14-low, CD16-positive monocyte CL0002396
    CSI 2.5
    rCSI 2.0%
    PRS 6.3%
  • epithelial cell of nephron CL1000449
    CSI 2.6
    rCSI 24.3%
    PRS 30.7%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

Loading network (please wait)...

Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [ATP5MC1](/details-gene/516) encodes a core subunit of the mitochondrial F1F0-ATP synthase, the enzyme responsible for the synthesis of ATP through oxidative phosphorylation. As a fundamental component of cellular energy production, this gene is essential for mitochondrial function. Its expression profile indicates a significant role in cells with high metabolic and proliferative demands. **Overall**, it is most prominently expressed in progenitor populations such as [stem cells](/details-cell/CL0000034) and hematopoietic progenitors, as well as in highly active epithelial tissues, including [intestine goblet cells](/details-cell/CL0019031) and [transit amplifying cells of the colon](/details-cell/CL0009011), underscoring its importance in fueling cell division, differentiation, and specialized secretory functions. ## Cellular Roles and Expression Landscape The expression pattern of [ATP5MC1](/details-gene/516) highlights its universal importance in cellular bioenergetics, with a clear enrichment in specific cell types defined by high energy expenditure. **Overall**, the gene shows the highest significance in progenitor and stem cell populations, including [stem cells](/details-cell/CL0000034) (CSI: 81.90), [granulocyte monocyte progenitor cells](/details-cell/CL0000557) (CSI: 73.48), and [common myeloid progenitors](/details-cell/CL0000049) (CSI: 70.61). This suggests that robust ATP production is a critical requirement for maintaining pluripotency and driving lineage commitment. Furthermore, its high expression in rapidly dividing cells like [transit amplifying cells of the colon](/details-cell/CL0009011) (CSI: 73.28) and functionally active epithelial cells such as [intestine goblet cells](/details-cell/CL0019031) (CSI: 74.77) and [keratinocytes](/details-cell/CL0000312) (CSI: 58.89) is consistent with a vital role in supporting processes like tissue renewal and protein synthesis. Conversely, [ATP5MC1](/details-gene/516) shows significantly lower expression in several terminally differentiated and metabolically quiescent cell types. This includes various neuronal subtypes, such as [pvalb GABAergic cortical interneurons](/details-cell/CL4023018) (CSI: -6.60), and specialized immune cells like [CD14-positive, CD16-positive monocytes](/details-cell/CL0002397) (CSI: -19.64) and [CD4-positive, CD25-positive, alpha-beta regulatory T cells](/details-cell/CL0000792) (CSI: -7.59). This selective low expression suggests that while essential, its relative abundance is tuned to the specific metabolic state of the cell, being less critical in cells that are post-mitotic or in a less metabolically active state. ## Pathways and Molecular Function Functionally, [ATP5MC1](/details-gene/516) is integral to the process of cellular respiration. Gene Ontology annotations place it squarely within the [mitochondrial inner membrane](/details-cell/GO:0005743), where it functions as a component of the [proton-transporting atp synthase complex, coupling factor f(o)](/details-cell/GO:0045263). This complex utilizes the energy from the proton gradient across the inner mitochondrial membrane to drive ATP synthesis, a process defined as [proton motive force-driven atp synthesis](/details-cell/GO:0015986). Its molecular function is annotated as [proton transmembrane transporter activity](/details-cell/GO:0015078), reflecting its role in translocating protons as part of the rotary mechanism of ATP synthase. Reactome pathways further confirm its central role in energy metabolism, including [Formation of atp by chemiosmotic coupling](/details-cell/R-HSA-163210) and [Aerobic respiration and respiratory electron transport](/details-cell/R-HSA-1428517). Its involvement in broader processes like [Mitochondrial biogenesis](/details-cell/R-HSA-1592230) highlights that its expression and assembly are coordinated with the overall generation of new mitochondria. The proper incorporation of the ATP5MC1 protein into the ATP synthase complex is a critical step, facilitated by other proteins such as TMEM70 ([Link](https://doi.org/10.1096/fj.201900685rr), [Link](https://doi.org/10.1016/j.bbamcr.2020.118942)). This critical function in ATP generation provides the molecular basis for its high expression in metabolically demanding cells like progenitors and secretory epithelial cells. ## Research Directions The widespread yet distinctly regulated expression of [ATP5MC1](/details-gene/516) suggests that the modulation of mitochondrial respiration capacity is a key aspect of cell fate and function. ### Proposed Hypotheses 1. **Metabolic Gating in Hematopoiesis:** The significant drop in [ATP5MC1](/details-gene/516) expression from hematopoietic progenitors to certain differentiated immune cells (e.g., [regulatory T cells](/details-cell/CL0000792)) suggests that downregulation of ATP synthase capacity is a programmed event during hematopoietic differentiation. This metabolic shift may serve as a checkpoint to enforce lineage commitment and exit from the cell cycle. 2. **Bioenergetic Control of Epithelial Turnover:** In the intestinal crypt, the high expression of [ATP5MC1](/details-gene/516) in [transit amplifying cells](/details-cell/CL0009011) is likely essential to fuel their rapid proliferation. We hypothesize that a gradient of [ATP5MC1](/details-gene/516) expression exists along the crypt-villus axis, with its downregulation being a prerequisite for terminal differentiation into mature enterocytes or secretory cell types. ### Experimental Approach To test the hypothesis regarding **metabolic gating in hematopoiesis**, an effective approach would be to use an *in vitro* differentiation model starting with primary human CD34+ hematopoietic stem and progenitor cells (HSPCs). * **Methodology:** Lentiviral vectors could be used to deliver a CRISPR interference (CRISPRi) system to achieve a stable knockdown of [ATP5MC1](/details-gene/516) expression in HSPCs. These modified cells, along with non-targeting controls, would be cultured in media containing cytokines that promote differentiation towards specific lineages (e.g., myeloid or lymphoid). * **Analysis:** At various time points, cell populations would be analyzed using flow cytometry for lineage-specific surface markers to assess differentiation efficiency. Concurrently, metabolic analysis using a Seahorse XF Analyzer would measure the oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) to quantify the impact of [ATP5MC1](/details-gene/516) knockdown on oxidative phosphorylation and glycolysis. A significant impairment in differentiation potential coupled with a reduced OCR would support the hypothesis. ### Therapeutic Potential As a housekeeping gene essential for ATP production in nearly all cells, [ATP5MC1](/details-gene/516) is a poor candidate for systemic therapeutic inhibition due to the high probability of severe, widespread toxicity. However, its role as a biomarker of cellular metabolic state is significant. Pathological conditions characterized by aberrant proliferation, such as cancer, often involve metabolic reprogramming. Quantifying [ATP5MC1](/details-gene/516) expression in tumors could provide insight into their metabolic phenotype (i.e., reliance on oxidative phosphorylation vs. glycolysis). While direct targeting is unlikely, understanding its regulation could open avenues for therapies that exploit the metabolic vulnerabilities of cancer cells, potentially in combination with other agents.

Genular Protein ID: 3140542800

Symbol: AT5G1_HUMAN

Name: ATP synthase lipid-binding protein

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 8328972

Title: Sequences of members of the human gene family for the c subunit of mitochondrial ATP synthase.

PubMed ID: 8328972

DOI: 10.1042/bj2930051

PubMed ID: 8485160

Title: Molecular cloning and sequence of two cDNAs for human subunit c of H(+)-ATP synthase in mitochondria.

PubMed ID: 8485160

DOI: 10.1016/0167-4781(93)90249-d

PubMed ID: 11230166

Title: Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.

PubMed ID: 11230166

DOI: 10.1101/gr.gr1547r

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 2883974

Title: Human liver cDNA clones encoding proteolipid subunit 9 of the mitochondrial ATPase complex.

PubMed ID: 2883974

DOI: 10.1016/0006-291x(87)91446-x

PubMed ID: 31652072

Title: TMEM70 facilitates biogenesis of mammalian ATP synthase by promoting subunit c incorporation into the rotor structure of the enzyme.

PubMed ID: 31652072

DOI: 10.1096/fj.201900685rr

PubMed ID: 30530489

Title: Lysine methylation by the mitochondrial methyltransferase FAM173B optimizes the function of mitochondrial ATP synthase.

PubMed ID: 30530489

DOI: 10.1074/jbc.ra118.005473

PubMed ID: 33359711

Title: TMEM70 forms oligomeric scaffolds within mitochondrial cristae promoting in situ assembly of mammalian ATP synthase proton channel.

PubMed ID: 33359711

DOI: 10.1016/j.bbamcr.2020.118942

Sequence Information:

  • Length: 136
  • Mass: 14277
  • Checksum: 1AFF1F16BB532647
  • Sequence:
  • MQTAGALFIS PALIRCCTRG LIRPVSASFL NSPVNSSKQP SYSNFPLQVA RREFQTSVVS 
    RDIDTAAKFI GAGAATVGVA GSGAGIGTVF GSLIIGYARN PSLKQQLFSY AILGFALSEA 
    MGLFCLMVAF LILFAM