Details for: ATP6V1C1

Gene ID: 528

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: ATP6V1C1

Ensembl ID: ENSG00000155097

Description: ATPase H+ transporting V1 subunit C1

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • Hofbauer cell CL3000001
    CSI 16.85
    rCSI 31.81%
    PRS 60.8
  • myeloid leukocyte CL0000766
    CSI 15.6
    rCSI 14.39%
    PRS 51.35
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 11.75
    rCSI 28.56%
    PRS 32.59
  • placental villous trophoblast CL2000060
    CSI 10.78
    rCSI 16.66%
    PRS 48.2
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 7.84
    rCSI 28.2%
    PRS 32.44
  • dendritic cell, human CL0001056
    CSI 7.6
    rCSI 11.67%
    PRS 58.19
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 5.48
    rCSI 9.68%
    PRS 32.77
  • melanocyte CL0000148
    CSI 5.27
    rCSI 3.91%
    PRS 43.4
  • parietal epithelial cell CL1000452
    CSI 5.23
    rCSI 13.98%
    PRS 42.41
  • L6b glutamatergic cortical neuron CL4023038
    CSI 4.76
    rCSI 14.86%
    PRS 35.07
  • paneth cell CL0000510
    CSI 4.64
    rCSI 6.85%
    PRS 67.75
  • epithelial cell of lower respiratory tract CL0002632
    CSI 4.48
    rCSI 3.47%
    PRS 51.06
  • double-positive, alpha-beta thymocyte CL0000809
    CSI 4.4
    rCSI 4.49%
    PRS 64
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 4.28
    rCSI 25.21%
    PRS 35.11
  • Kupffer cell CL0000091
    CSI 4.17
    rCSI 9.53%
    PRS 49.77
  • fibroblast of cardiac tissue CL0002548
    CSI 3.88
    rCSI 18.6%
    PRS 49.26
  • dopaminergic neuron CL0000700
    CSI 3.84
    rCSI 21.71%
    PRS 36.26
  • pvalb GABAergic cortical interneuron CL4023018
    CSI 3.4
    rCSI 4.23%
    PRS 32.01
  • common myeloid progenitor CL0000049
    CSI 3.31
    rCSI 2.68%
    PRS 51.27
  • cerebral cortex neuron CL0010012
    CSI 3.28
    rCSI 13.35%
    PRS 46.89
  • promonocyte CL0000559
    CSI 3.17
    rCSI 5.43%
    PRS 59.9
  • Schwann cell CL0002573
    CSI 3.02
    rCSI 8.6%
    PRS 49.29
  • ON-bipolar cell CL0000749
    CSI 3.01
    rCSI 4.48%
    PRS 52.58
  • epithelial cell of lung CL0000082
    CSI 2.98
    rCSI 2.47%
    PRS 49.14
  • perivascular cell CL4033054
    CSI 2.88
    rCSI 3.93%
    PRS 55.64
  • mesodermal cell CL0000222
    CSI 2.7
    rCSI 3.25%
    PRS 48.3
  • inflammatory macrophage CL0000863
    CSI 2.66
    rCSI 4.55%
    PRS 76.28
  • pulmonary capillary endothelial cell CL4028001
    CSI 2.66
    rCSI 5.06%
    PRS 67.01
  • early lymphoid progenitor CL0000936
    CSI 2.62
    rCSI 2.3%
    PRS 55.74
  • lung ciliated cell CL1000271
    CSI 2.61
    rCSI 3.01%
    PRS 40.37
  • erythrocyte CL0000232
    CSI 2.6
    rCSI 5.91%
    PRS 55.63
  • interstitial cell of Cajal CL0002088
    CSI 2.58
    rCSI 3.29%
    PRS 56.12
  • near-projecting glutamatergic cortical neuron CL4023012
    CSI 2.52
    rCSI 9.52%
    PRS 34.53
  • pro-B cell CL0000826
    CSI 2.51
    rCSI 2.08%
    PRS 51.78
  • choroid plexus epithelial cell CL0000706
    CSI 2.49
    rCSI 4.07%
    PRS 40.4
  • goblet cell CL0000160
    CSI 2.47
    rCSI 2.34%
    PRS 50.89
  • bronchus fibroblast of lung CL2000093
    CSI 2.45
    rCSI 1.99%
    PRS 50.88
  • neural crest cell CL0011012
    CSI 2.44
    rCSI 1.93%
    PRS 37.71
  • alveolar macrophage CL0000583
    CSI 2.41
    rCSI 3.97%
    PRS 55.88
  • colon epithelial cell CL0011108
    CSI 2.36
    rCSI 2.47%
    PRS 47.28
  • sst GABAergic cortical interneuron CL4023017
    CSI 2.35
    rCSI 3.03%
    PRS 34.73
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 2.35
    rCSI 3.94%
    PRS 33.68
  • retinal rod cell CL0000604
    CSI 2.35
    rCSI 4.13%
    PRS 47.98
  • adventitial cell CL0002503
    CSI 2.34
    rCSI 5.59%
    PRS 60.07
  • cerebral cortex endothelial cell CL1001602
    CSI 2.31
    rCSI 4%
    PRS 40.77
  • direct pathway medium spiny neuron CL4023026
    CSI 2.31
    rCSI 55.23%
    PRS 33.15
  • ependymal cell CL0000065
    CSI 2.27
    rCSI 4.61%
    PRS 31.82
  • pancreatic D cell CL0000173
    CSI 2.23
    rCSI 2.2%
    PRS 52.96
  • blood vessel endothelial cell CL0000071
    CSI 2.2
    rCSI 4.56%
    PRS 47.89
  • indirect pathway medium spiny neuron CL4023029
    CSI 2.18
    rCSI 52.7%
    PRS 34.05
  • VIP GABAergic cortical interneuron CL4023016
    CSI 2.16
    rCSI 2.58%
    PRS 33.56
  • elicited macrophage CL0000861
    CSI 2.16
    rCSI 1.98%
    PRS 58.6
  • alternatively activated macrophage CL0000890
    CSI 2.16
    rCSI 2.71%
    PRS 63.78
  • plasmacytoid dendritic cell, human CL0001058
    CSI 2.16
    rCSI 1.51%
    PRS 52.63
  • cardiac endothelial cell CL0010008
    CSI 2.13
    rCSI 8.61%
    PRS 48.71
  • kidney connecting tubule epithelial cell CL1000768
    CSI 2.12
    rCSI 5.39%
    PRS 40.3
  • fibroblast of lung CL0002553
    CSI 2.12
    rCSI 1.97%
    PRS 50.04
  • astrocyte of the cerebral cortex CL0002605
    CSI 2.1
    rCSI 4.71%
    PRS 34.49
  • renal alpha-intercalated cell CL0005011
    CSI 2.04
    rCSI 2.72%
    PRS 58.94
  • interneuron CL0000099
    CSI 2.03
    rCSI 4.09%
    PRS 39.88
  • glioblast CL0000030
    CSI 2.01
    rCSI 3.21%
    PRS 43.89
  • OFF-bipolar cell CL0000750
    CSI 2.01
    rCSI 2.75%
    PRS 59.73
  • retinal pigment epithelial cell CL0002586
    CSI 2.01
    rCSI 3.99%
    PRS 48.9
  • hepatocyte CL0000182
    CSI 1.98
    rCSI 3.55%
    PRS 48.91
  • multi-ciliated epithelial cell CL0005012
    CSI 1.98
    rCSI 1.97%
    PRS 44.31
  • retinal bipolar neuron CL0000748
    CSI 1.94
    rCSI 3.63%
    PRS 39.54
  • Mueller cell CL0000636
    CSI 1.92
    rCSI 4.38%
    PRS 43.2
  • pulmonary ionocyte CL0017000
    CSI 1.91
    rCSI 2.33%
    PRS 58.18
  • ciliated epithelial cell CL0000067
    CSI 1.91
    rCSI 1.68%
    PRS 39.09
  • CD1c-positive myeloid dendritic cell CL0002399
    CSI 1.86
    rCSI 2.25%
    PRS 58.49
  • inhibitory interneuron CL0000498
    CSI 1.86
    rCSI 4.3%
    PRS 40.93
  • mucus secreting cell CL0000319
    CSI 1.85
    rCSI 2.94%
    PRS 61.29
  • Bergmann glial cell CL0000644
    CSI 1.81
    rCSI 2.48%
    PRS 45.54
  • stem cell CL0000034
    CSI 1.8
    rCSI 1.74%
    PRS 40.95
  • fallopian tube secretory epithelial cell CL4030006
    CSI 1.79
    rCSI 1.73%
    PRS 50.68
  • hepatic stellate cell CL0000632
    CSI 1.79
    rCSI 6.69%
    PRS 42.87
  • pancreatic A cell CL0000171
    CSI 1.77
    rCSI 1.86%
    PRS 53.65
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 1.76
    rCSI 2.26%
    PRS 48.26
  • chondrocyte CL0000138
    CSI 1.71
    rCSI 2.72%
    PRS 42.99
  • extravillous trophoblast CL0008036
    CSI 1.69
    rCSI 2.09%
    PRS 46.17
  • basal cell CL0000646
    CSI 1.69
    rCSI 2.26%
    PRS 51.59
  • mononuclear phagocyte CL0000113
    CSI 1.68
    rCSI 3.71%
    PRS 54.45
  • kidney loop of Henle thin descending limb epithelial cell CL1001111
    CSI 1.67
    rCSI 2.37%
    PRS 46.9
  • podocyte CL0000653
    CSI 1.66
    rCSI 7.38%
    PRS 49.36
  • muscle cell CL0000187
    CSI 1.65
    rCSI 3.39%
    PRS 71.21
  • duct epithelial cell CL0000068
    CSI 1.64
    rCSI 2.4%
    PRS 53.74
  • ionocyte CL0005006
    CSI 1.63
    rCSI 1.75%
    PRS 48.62
  • kidney interstitial alternatively activated macrophage CL1000695
    CSI 1.62
    rCSI 4.23%
    PRS 49.39
  • vascular leptomeningeal cell CL4023051
    CSI 1.59
    rCSI 2.79%
    PRS 42.45
  • retinal blood vessel endothelial cell CL0002585
    CSI 1.59
    rCSI 2.54%
    PRS 54.34
  • sncg GABAergic cortical interneuron CL4023015
    CSI 1.54
    rCSI 2.47%
    PRS 35.79
  • lung neuroendocrine cell CL1000223
    CSI 1.53
    rCSI 2.26%
    PRS 55.71
  • BEST4+ enteroycte CL4030026
    CSI 1.51
    rCSI 1.88%
    PRS 52.77
  • renal principal cell CL0005009
    CSI 1.51
    rCSI 3.93%
    PRS 54.8
  • rod bipolar cell CL0000751
    CSI 1.5
    rCSI 2.7%
    PRS 43.63
  • syncytiotrophoblast cell CL0000525
    CSI 1.47
    rCSI 4.25%
    PRS 67.11
  • CD14-positive, CD16-positive monocyte CL0002397
    CSI 1.45
    rCSI 1.91%
    PRS 64
  • microcirculation associated smooth muscle cell CL0008035
    CSI 1.45
    rCSI 4.21%
    PRS 52.54
  • epithelial cell of proximal tubule CL0002306
    CSI 1.43
    rCSI 3.49%
    PRS 45.25
  • pancreatic ductal cell CL0002079
    CSI 1.41
    rCSI 2.75%
    PRS 52.61
  • ON midget ganglion cell CL4033046
    CSI 0.2
    rCSI 4.7%
    PRS 42.0%
  • ON parasol ganglion cell CL4033052
    CSI 0.3
    rCSI 4.2%
    PRS 42.0%
  • endothelial cell of placenta CL0009092
    CSI 0.5
    rCSI 2.5%
    PRS 62.1%
  • central nervous system neuron CL2000029
    CSI 0.6
    rCSI 4.2%
    PRS 37.8%
  • medium spiny neuron CL1001474
    CSI 0.6
    rCSI 5.1%
    PRS 37.5%
  • L4 intratelencephalic projecting glutamatergic neuron CL4030063
    CSI 0.6
    rCSI 1.5%
    PRS 38.8%
  • amacrine cell CL0000561
    CSI 0.7
    rCSI 2.0%
    PRS 41.1%
  • pancreatic PP cell CL0002275
    CSI 0.7
    rCSI 2.8%
    PRS 65.5%
  • pancreatic stellate cell CL0002410
    CSI 0.7
    rCSI 4.2%
    PRS 60.9%
  • L2/3 intratelencephalic projecting glutamatergic neuron CL4030059
    CSI 0.8
    rCSI 1.6%
    PRS 39.8%
  • granulocyte monocyte progenitor cell CL0000557
    CSI 0.8
    rCSI 0.7%
    PRS 54.7%
  • neural progenitor cell CL0011020
    CSI 0.8
    rCSI 3.5%
    PRS 42.9%
  • L5/6 near-projecting glutamatergic neuron CL4030067
    CSI 0.8
    rCSI 2.6%
    PRS 38.5%
  • colon macrophage CL0009038
    CSI 0.9
    rCSI 4.0%
    PRS 71.9%
  • cardiac neuron CL0010022
    CSI 0.9
    rCSI 3.0%
    PRS 47.0%
  • type B pancreatic cell CL0000169
    CSI 0.9
    rCSI 2.1%
    PRS 47.9%
  • retinal ganglion cell CL0000740
    CSI 1.0
    rCSI 2.1%
    PRS 37.9%
  • retinal cone cell CL0000573
    CSI 1.1
    rCSI 1.7%
    PRS 40.6%
  • cardiac muscle cell CL0000746
    CSI 1.1
    rCSI 1.5%
    PRS 40.9%
  • retina horizontal cell CL0000745
    CSI 1.1
    rCSI 1.7%
    PRS 46.9%
  • CD14-low, CD16-positive monocyte CL0002396
    CSI 1.1
    rCSI 0.8%
    PRS 49.6%
  • glycinergic amacrine cell CL4030028
    CSI 1.1
    rCSI 2.9%
    PRS 49.0%
  • luminal epithelial cell of mammary gland CL0002326
    CSI 1.2
    rCSI 2.1%
    PRS 66.7%
  • intermediate monocyte CL0002393
    CSI 1.2
    rCSI 1.8%
    PRS 53.1%
  • myeloid dendritic cell CL0000782
    CSI 1.2
    rCSI 1.7%
    PRS 66.8%
  • renal interstitial pericyte CL1001318
    CSI 1.2
    rCSI 3.4%
    PRS 46.5%
  • lung macrophage CL1001603
    CSI 1.3
    rCSI 2.8%
    PRS 57.4%
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 1.3
    rCSI 4.0%
    PRS 37.4%
  • keratocyte CL0002363
    CSI 1.3
    rCSI 3.1%
    PRS 59.7%
  • pancreatic acinar cell CL0002064
    CSI 1.3
    rCSI 1.7%
    PRS 55.7%
  • enteroendocrine cell CL0000164
    CSI 1.3
    rCSI 1.8%
    PRS 52.8%
  • kidney loop of Henle thin ascending limb epithelial cell CL1001107
    CSI 1.3
    rCSI 3.5%
    PRS 46.0%
  • granulocyte CL0000094
    CSI 1.4
    rCSI 2.1%
    PRS 59.8%
  • pancreatic ductal cell CL0002079
    CSI 1.4
    rCSI 2.8%
    PRS 52.6%
  • epithelial cell of proximal tubule CL0002306
    CSI 1.4
    rCSI 3.5%
    PRS 45.3%
  • microcirculation associated smooth muscle cell CL0008035
    CSI 1.5
    rCSI 4.2%
    PRS 52.5%
  • CD14-positive, CD16-positive monocyte CL0002397
    CSI 1.5
    rCSI 1.9%
    PRS 64.0%
  • syncytiotrophoblast cell CL0000525
    CSI 1.5
    rCSI 4.3%
    PRS 67.1%
  • rod bipolar cell CL0000751
    CSI 1.5
    rCSI 2.7%
    PRS 43.6%
  • renal principal cell CL0005009
    CSI 1.5
    rCSI 3.9%
    PRS 54.8%
  • BEST4+ enteroycte CL4030026
    CSI 1.5
    rCSI 1.9%
    PRS 52.8%
  • lung neuroendocrine cell CL1000223
    CSI 1.5
    rCSI 2.3%
    PRS 55.7%
  • sncg GABAergic cortical interneuron CL4023015
    CSI 1.5
    rCSI 2.5%
    PRS 35.8%
  • retinal blood vessel endothelial cell CL0002585
    CSI 1.6
    rCSI 2.5%
    PRS 54.3%
  • vascular leptomeningeal cell CL4023051
    CSI 1.6
    rCSI 2.8%
    PRS 42.5%
  • kidney interstitial alternatively activated macrophage CL1000695
    CSI 1.6
    rCSI 4.2%
    PRS 49.4%
  • ionocyte CL0005006
    CSI 1.6
    rCSI 1.8%
    PRS 48.6%
  • duct epithelial cell CL0000068
    CSI 1.6
    rCSI 2.4%
    PRS 53.7%
  • muscle cell CL0000187
    CSI 1.7
    rCSI 3.4%
    PRS 71.2%
  • podocyte CL0000653
    CSI 1.7
    rCSI 7.4%
    PRS 49.4%
  • kidney loop of Henle thin descending limb epithelial cell CL1001111
    CSI 1.7
    rCSI 2.4%
    PRS 46.9%
  • mononuclear phagocyte CL0000113
    CSI 1.7
    rCSI 3.7%
    PRS 54.5%
  • basal cell CL0000646
    CSI 1.7
    rCSI 2.3%
    PRS 51.6%
  • extravillous trophoblast CL0008036
    CSI 1.7
    rCSI 2.1%
    PRS 46.2%
  • chondrocyte CL0000138
    CSI 1.7
    rCSI 2.7%
    PRS 43.0%
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 1.8
    rCSI 2.3%
    PRS 48.3%
  • pancreatic A cell CL0000171
    CSI 1.8
    rCSI 1.9%
    PRS 53.7%
  • hepatic stellate cell CL0000632
    CSI 1.8
    rCSI 6.7%
    PRS 42.9%
  • fallopian tube secretory epithelial cell CL4030006
    CSI 1.8
    rCSI 1.7%
    PRS 50.7%
  • stem cell CL0000034
    CSI 1.8
    rCSI 1.7%
    PRS 41.0%
  • Bergmann glial cell CL0000644
    CSI 1.8
    rCSI 2.5%
    PRS 45.5%
  • mucus secreting cell CL0000319
    CSI 1.9
    rCSI 2.9%
    PRS 61.3%
  • inhibitory interneuron CL0000498
    CSI 1.9
    rCSI 4.3%
    PRS 40.9%
  • CD1c-positive myeloid dendritic cell CL0002399
    CSI 1.9
    rCSI 2.3%
    PRS 58.5%
  • ciliated epithelial cell CL0000067
    CSI 1.9
    rCSI 1.7%
    PRS 39.1%
  • pulmonary ionocyte CL0017000
    CSI 1.9
    rCSI 2.3%
    PRS 58.2%
  • Mueller cell CL0000636
    CSI 1.9
    rCSI 4.4%
    PRS 43.2%
  • retinal bipolar neuron CL0000748
    CSI 1.9
    rCSI 3.6%
    PRS 39.5%
  • multi-ciliated epithelial cell CL0005012
    CSI 2.0
    rCSI 2.0%
    PRS 44.3%
  • hepatocyte CL0000182
    CSI 2.0
    rCSI 3.6%
    PRS 48.9%
  • retinal pigment epithelial cell CL0002586
    CSI 2.0
    rCSI 4.0%
    PRS 48.9%
  • OFF-bipolar cell CL0000750
    CSI 2.0
    rCSI 2.8%
    PRS 59.7%
  • glioblast CL0000030
    CSI 2.0
    rCSI 3.2%
    PRS 43.9%
  • interneuron CL0000099
    CSI 2.0
    rCSI 4.1%
    PRS 39.9%
  • renal alpha-intercalated cell CL0005011
    CSI 2.0
    rCSI 2.7%
    PRS 58.9%
  • astrocyte of the cerebral cortex CL0002605
    CSI 2.1
    rCSI 4.7%
    PRS 34.5%
  • fibroblast of lung CL0002553
    CSI 2.1
    rCSI 2.0%
    PRS 50.0%
  • kidney connecting tubule epithelial cell CL1000768
    CSI 2.1
    rCSI 5.4%
    PRS 40.3%
  • cardiac endothelial cell CL0010008
    CSI 2.1
    rCSI 8.6%
    PRS 48.7%
  • plasmacytoid dendritic cell, human CL0001058
    CSI 2.2
    rCSI 1.5%
    PRS 52.6%
  • alternatively activated macrophage CL0000890
    CSI 2.2
    rCSI 2.7%
    PRS 63.8%
  • elicited macrophage CL0000861
    CSI 2.2
    rCSI 2.0%
    PRS 58.6%
  • VIP GABAergic cortical interneuron CL4023016
    CSI 2.2
    rCSI 2.6%
    PRS 33.6%
  • indirect pathway medium spiny neuron CL4023029
    CSI 2.2
    rCSI 52.7%
    PRS 34.1%
  • blood vessel endothelial cell CL0000071
    CSI 2.2
    rCSI 4.6%
    PRS 47.9%
  • pancreatic D cell CL0000173
    CSI 2.2
    rCSI 2.2%
    PRS 53.0%
  • ependymal cell CL0000065
    CSI 2.3
    rCSI 4.6%
    PRS 31.8%
  • direct pathway medium spiny neuron CL4023026
    CSI 2.3
    rCSI 55.2%
    PRS 33.2%
  • cerebral cortex endothelial cell CL1001602
    CSI 2.3
    rCSI 4.0%
    PRS 40.8%
  • adventitial cell CL0002503
    CSI 2.3
    rCSI 5.6%
    PRS 60.1%
  • retinal rod cell CL0000604
    CSI 2.4
    rCSI 4.1%
    PRS 48.0%
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 2.4
    rCSI 3.9%
    PRS 33.7%
  • sst GABAergic cortical interneuron CL4023017
    CSI 2.4
    rCSI 3.0%
    PRS 34.7%
  • colon epithelial cell CL0011108
    CSI 2.4
    rCSI 2.5%
    PRS 47.3%
  • alveolar macrophage CL0000583
    CSI 2.4
    rCSI 4.0%
    PRS 55.9%
  • neural crest cell CL0011012
    CSI 2.4
    rCSI 1.9%
    PRS 37.7%
  • bronchus fibroblast of lung CL2000093
    CSI 2.5
    rCSI 2.0%
    PRS 50.9%
  • goblet cell CL0000160
    CSI 2.5
    rCSI 2.3%
    PRS 50.9%
  • choroid plexus epithelial cell CL0000706
    CSI 2.5
    rCSI 4.1%
    PRS 40.4%
  • pro-B cell CL0000826
    CSI 2.5
    rCSI 2.1%
    PRS 51.8%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

Loading network (please wait)...

Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [ATP6V1C1](/details-gene/528), or ATPase H+ Transporting V1 Subunit C1, encodes a critical component of the vacuolar-type H+-ATPase (V-ATPase) complex. This multi-subunit enzyme is fundamental for establishing and maintaining acidic pH in various intracellular organelles, such as lysosomes, endosomes, and synaptic vesicles. The **Overall** expression profile highlights its high significance in cell types with demanding metabolic, phagocytic, or secretory functions. It is a top marker in cells of the myeloid lineage, including [Hofbauer cell](/details-cell/CL3000001)s and [myeloid leukocyte](/details-cell/CL0000766)s, as well as in highly specialized cells like [placental villous trophoblast](/details-cell/CL2000060)s and various subtypes of glutamatergic neurons. This broad yet specific expression pattern underscores its essential role in processes ranging from innate immunity and nutrient transport to neurotransmission. ## Cellular Roles and Expression Landscape The expression landscape of [ATP6V1C1](/details-gene/528) reveals its fundamental importance across diverse physiological systems. Its highest significance is observed in professional phagocytes and antigen-presenting cells, with top scores in [Hofbauer cell](/details-cell/CL3000001)s (placental macrophages), [myeloid leukocyte](/details-cell/CL0000766)s, [dendritic cell, human](/details-cell/CL0001056)s, and [Kupffer cell](/details-cell/CL0000091)s. This is consistent with the V-ATPase's role in acidifying phagosomes and lysosomes, a process essential for pathogen degradation, antigen processing, and presentation. Beyond the immune system, [ATP6V1C1](/details-gene/528) shows high significance in several subtypes of excitatory neurons, including [L2/3-6 intratelencephalic projecting glutamatergic neuron](/details-cell/CL4023040) and [L5 extratelencephalic projecting glutamatergic cortical neuron](/details-cell/CL4023041). This expression pattern points to a crucial role in neural function, likely related to the acidification of synaptic vesicles required for neurotransmitter loading and release. Furthermore, the gene is highly significant in specialized barrier and secretory cells, such as [placental villous trophoblast](/details-cell/CL2000060) and [paneth cell](/details-cell/CL0000510). In the placenta, it may be involved in nutrient transport and pH homeostasis at the maternal-fetal interface. In Paneth cells, V-ATPase activity is necessary for the proper processing and secretion of antimicrobial peptides. The gene's presence in [melanocyte](/details-cell/CL0000148)s is also noteworthy, as melanosome acidification is critical for melanin synthesis. This diverse expression highlights [ATP6V1C1](/details-gene/528) as a housekeeping gene whose activity level is tuned to meet the specific proton-pumping demands of each cell type. ## Pathways and Molecular Function Functionally, [ATP6V1C1](/details-gene/528) is an integral part of the V1 peripheral domain of the V-ATPase complex ([GO:0000221](https://www.ebi.ac.uk/QuickGO/term/GO:0000221)), which is responsible for ATP hydrolysis. This activity powers the enzyme's primary biological process, [proton transmembrane transport](/details-go/GO1902600), enabling the acidification of intracellular compartments. This core function supports a wide array of cellular processes detailed in functional ontologies. Its role is prominent in membrane trafficking and organelle function, including localization to the [lysosomal membrane](/details-go/GO0005765) and involvement in [synaptic vesicle lumen acidification](/details-go/GO0097401). Consistent with its high expression in myeloid cells, it is implicated in the [Innate immune system](/details-reactome/R-HSA-168249), particularly in processes like [ROS and RNS production in phagocytes](/details-reactome/R-HSA-1222556). Furthermore, its connection to nutrient sensing pathways such as [Amino acids regulate mtorc1](/details-reactome/R-HSA-9639288) and endocytic pathways like [Transferrin endocytosis and recycling](/details-reactome/R-HSA-917977) underscores its importance in cellular metabolism and homeostasis. The gene's involvement in [Mitf-m-regulated melanocyte development](/details-reactome/R-HSA-9730414) aligns perfectly with its observed significance in [melanocyte](/details-cell/CL0000148)s. The collective data portrays [ATP6V1C1](/details-gene/528) as a central hub linking cellular energy status (ATP hydrolysis) to organelle function and major signaling pathways. ## Research Directions The widespread yet cell-type-specific high expression of [ATP6V1C1](/details-gene/528) suggests that while it is a core housekeeping gene, its regulation and function are context-dependent, offering several avenues for future research. **Proposed Hypotheses:** 1. Given its high significance in both [Hofbauer cell](/details-cell/CL3000001)s and [placental villous trophoblast](/details-cell/CL2000060)s, it is hypothesized that [ATP6V1C1](/details-gene/528) is a key regulator of materno-fetal nutrient and ion exchange, and that its dysregulation contributes to the pathophysiology of placental insufficiency or pre-eclampsia through impaired endosomal trafficking and pH homeostasis. 2. The high significance of [ATP6V1C1](/details-gene/528) in multiple glutamatergic neuron subtypes suggests that it is critical for maintaining the fidelity of excitatory neurotransmission. It is hypothesized that subtle deficits in [ATP6V1C1](/details-gene/528) function could lead to impaired synaptic vesicle refilling, contributing to synaptic fatigue and potentially underlying certain neurodevelopmental or neurodegenerative disorders associated with excitotoxicity. **Experimental Approach:** To test the first hypothesis regarding its role in placental function, a targeted approach in relevant cell models could be employed. Specifically, one could use CRISPR-Cas9 to knock down or knock out [ATP6V1C1](/details-gene/528) in a human trophoblast cell line (e.g., BeWo or HTR-8/SVneo) cultured as a polarized monolayer. The functional consequences could be assayed by measuring trans-epithelial transport of key nutrients like iron (via radiolabeled transferrin) and amino acids. Additionally, lysosomal and endosomal pH could be monitored using ratiometric pH-sensitive dyes (e.g., LysoSensor) to confirm a direct impact on organelle acidification. The effect on cell signaling, particularly the mTORC1 pathway, could be assessed by western blotting for key phosphoproteins like p-S6K. **Therapeutic Potential:** As an essential subunit of the V-ATPase, [ATP6V1C1](/details-gene/528) itself represents a challenging therapeutic target for systemic administration due to the enzyme's ubiquitous and vital role, which would likely lead to significant off-target toxicity. However, V-ATPase **inhibition** is a known strategy in cancer research, as many tumor cells rely heavily on V-ATPase activity to manage the high acid production from their altered metabolism. Therefore, therapeutic strategies would likely focus on targeted delivery of V-ATPase inhibitors to specific cell populations, such as myeloid-derived suppressor cells within the tumor microenvironment, where the gene is highly expressed. Such an approach could modulate the immunosuppressive environment of a tumor while minimizing systemic side effects.

Genular Protein ID: 2066094745

Symbol: VATC1_HUMAN

Name: V-type proton ATPase subunit C 1

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 8250920

Title: Cloning and tissue distribution of subunits C, D, and E of the human vacuolar H(+)-ATPase.

PubMed ID: 8250920

DOI: 10.1006/bbrc.1993.2434

PubMed ID: 11707601

Title: BAALC, the human member of a novel mammalian neuroectoderm gene lineage, is implicated in hematopoiesis and acute leukemia.

PubMed ID: 11707601

DOI: 10.1073/pnas.241525498

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 2147024

Title: Molecular cloning of cDNA encoding the C subunit of H(+)-ATPase from bovine chromaffin granules.

PubMed ID: 2147024

DOI: 10.1016/s0021-9258(17)30516-1

PubMed ID: 12384298

Title: Molecular cloning and characterization of novel tissue-specific isoforms of the human vacuolar H(+)-ATPase C, G and d subunits, and their evaluation in autosomal recessive distal renal tubular acidosis.

PubMed ID: 12384298

DOI: 10.1016/s0378-1119(02)00884-3

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 22223895

Title: Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.

PubMed ID: 22223895

DOI: 10.1074/mcp.m111.015131

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 25944712

Title: N-terminome analysis of the human mitochondrial proteome.

PubMed ID: 25944712

DOI: 10.1002/pmic.201400617

PubMed ID: 33065002

Title: Structures of a Complete Human V-ATPase Reveal Mechanisms of Its Assembly.

PubMed ID: 33065002

DOI: 10.1016/j.molcel.2020.09.029

Sequence Information:

  • Length: 382
  • Mass: 43942
  • Checksum: 5626E2AB2BD66BA7
  • Sequence:
  • MTEFWLISAP GEKTCQQTWE KLHAATSKNN NLAVTSKFNI PDLKVGTLDV LVGLSDELAK 
    LDAFVEGVVK KVAQYMADVL EDSKDKVQEN LLANGVDLVT YITRFQWDMA KYPIKQSLKN 
    ISEIIAKGVT QIDNDLKSRA SAYNNLKGNL QNLERKNAGS LLTRSLAEIV KKDDFVLDSE 
    YLVTLLVVVP KLNHNDWIKQ YETLAEMVVP RSSNVLSEDQ DSYLCNVTLF RKAVDDFRHK 
    ARENKFIVRD FQYNEEEMKA DKEEMNRLST DKKKQFGPLV RWLKVNFSEA FIAWIHVKAL 
    RVFVESVLRY GLPVNFQAML LQPNKKTLKK LREVLHELYK HLDSSAAAII DAPMDIPGLN 
    LSQQEYYPYV YYKIDCNLLE FK