Details for: ATP6V0A1

Gene ID: 535

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: ATP6V0A1

Ensembl ID: ENSG00000033627

Description: ATPase H+ transporting V0 subunit a1

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • sncg GABAergic cortical interneuron CL4023015
    CSI 37.85
    rCSI 60.87%
    PRS 47.64
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 36.13
    rCSI 60.64%
    PRS 45.68
  • sst GABAergic cortical interneuron CL4023017
    CSI 30.96
    rCSI 39.92%
    PRS 46.97
  • VIP GABAergic cortical interneuron CL4023016
    CSI 27.66
    rCSI 33.04%
    PRS 45.49
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 26.11
    rCSI 63.47%
    PRS 44.17
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 24.8
    rCSI 43.81%
    PRS 44.81
  • pvalb GABAergic cortical interneuron CL4023018
    CSI 24.56
    rCSI 30.55%
    PRS 43.86
  • retinal ganglion cell CL0000740
    CSI 21.41
    rCSI 47.29%
    PRS 50.25
  • L6b glutamatergic cortical neuron CL4023038
    CSI 21.19
    rCSI 66.22%
    PRS 47.36
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 17.31
    rCSI 62.28%
    PRS 44.02
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 16.47
    rCSI 51.5%
    PRS 49.82
  • near-projecting glutamatergic cortical neuron CL4023012
    CSI 16.31
    rCSI 61.64%
    PRS 46.37
  • neuron CL0000540
    CSI 14.28
    rCSI 38.04%
    PRS 53.41
  • GABAergic amacrine cell CL4030027
    CSI 14.07
    rCSI 48.18%
    PRS 52.83
  • L4 intratelencephalic projecting glutamatergic neuron CL4030063
    CSI 13.58
    rCSI 32.47%
    PRS 51.26
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 10.81
    rCSI 63.68%
    PRS 46.82
  • erythroblast CL0000765
    CSI 9.92
    rCSI 26.34%
    PRS 74.88
  • Kupffer cell CL0000091
    CSI 9.69
    rCSI 22.15%
    PRS 64.27
  • intestinal tuft cell CL0019032
    CSI 9.67
    rCSI 14.78%
    PRS 68.55
  • central nervous system neuron CL2000029
    CSI 8.76
    rCSI 64.42%
    PRS 50.65
  • pancreatic A cell CL0000171
    CSI 8.69
    rCSI 9.1%
    PRS 67.86
  • neural crest cell CL0011012
    CSI 8.56
    rCSI 6.76%
    PRS 51.15
  • neural cell CL0002319
    CSI 7.89
    rCSI 29.78%
    PRS 49.94
  • L2/3 intratelencephalic projecting glutamatergic neuron CL4030059
    CSI 7.77
    rCSI 16.86%
    PRS 51.85
  • enteroendocrine cell CL0000164
    CSI 7.58
    rCSI 10.36%
    PRS 65.76
  • cerebellar granule cell CL0001031
    CSI 7.1
    rCSI 10.43%
    PRS 57.49
  • S cone cell CL0003050
    CSI 6.8
    rCSI 29.86%
    PRS 60.62
  • mature B cell CL0000785
    CSI 6.51
    rCSI 5.66%
    PRS 75
  • CD14-positive monocyte CL0001054
    CSI 6.47
    rCSI 8.05%
    PRS 74.93
  • enterocyte CL0000584
    CSI 6.29
    rCSI 10.14%
    PRS 67.42
  • pulmonary ionocyte CL0017000
    CSI 6.24
    rCSI 7.59%
    PRS 71.74
  • glandular epithelial cell CL0000150
    CSI 6.14
    rCSI 16.17%
    PRS 81.61
  • glioblast CL0000030
    CSI 6.13
    rCSI 9.78%
    PRS 56.6
  • retinal cone cell CL0000573
    CSI 6.08
    rCSI 9.79%
    PRS 53.81
  • IgG plasma cell CL0000985
    CSI 5.73
    rCSI 6.86%
    PRS 79.97
  • basal cell CL0000646
    CSI 5.64
    rCSI 7.55%
    PRS 64.53
  • pulmonary capillary endothelial cell CL4028001
    CSI 5.47
    rCSI 10.42%
    PRS 78.69
  • hepatocyte CL0000182
    CSI 5.41
    rCSI 9.69%
    PRS 63.43
  • pancreatic D cell CL0000173
    CSI 5.3
    rCSI 5.21%
    PRS 66.98
  • Bergmann glial cell CL0000644
    CSI 5.3
    rCSI 7.25%
    PRS 57.33
  • L5/6 near-projecting glutamatergic neuron CL4030067
    CSI 5.21
    rCSI 17.12%
    PRS 51.01
  • centrilobular region hepatocyte CL0019029
    CSI 5.21
    rCSI 13.58%
    PRS 67.27
  • intestine goblet cell CL0019031
    CSI 5.13
    rCSI 4.56%
    PRS 62.22
  • interstitial cell of Cajal CL0002088
    CSI 5.13
    rCSI 6.53%
    PRS 70.72
  • bronchus fibroblast of lung CL2000093
    CSI 5.09
    rCSI 4.14%
    PRS 64.62
  • vascular leptomeningeal cell CL4023051
    CSI 5.08
    rCSI 8.9%
    PRS 56.2
  • pulmonary alveolar type 1 cell CL0002062
    CSI 5.01
    rCSI 28.88%
    PRS 62.59
  • ionocyte CL0005006
    CSI 4.98
    rCSI 5.34%
    PRS 64.06
  • medium spiny neuron CL1001474
    CSI 4.71
    rCSI 40.59%
    PRS 51.2
  • kidney interstitial alternatively activated macrophage CL1000695
    CSI 4.6
    rCSI 11.99%
    PRS 63.95
  • eye photoreceptor cell CL0000287
    CSI 4.58
    rCSI 51.47%
    PRS 81.33
  • ON parasol ganglion cell CL4033052
    CSI 4.56
    rCSI 64.71%
    PRS 55.17
  • retinal rod cell CL0000604
    CSI 4.51
    rCSI 7.95%
    PRS 60.86
  • hepatic stellate cell CL0000632
    CSI 4.49
    rCSI 16.83%
    PRS 56.18
  • renal interstitial pericyte CL1001318
    CSI 4.43
    rCSI 12.22%
    PRS 59.59
  • mononuclear phagocyte CL0000113
    CSI 4.41
    rCSI 9.71%
    PRS 68.39
  • Mueller cell CL0000636
    CSI 4.36
    rCSI 9.94%
    PRS 55.79
  • pancreatic PP cell CL0002275
    CSI 4.32
    rCSI 17.21%
    PRS 76.16
  • radial glial cell CL0000681
    CSI 4.14
    rCSI 5.75%
    PRS 62.78
  • inhibitory interneuron CL0000498
    CSI 4.12
    rCSI 9.51%
    PRS 52.93
  • GABAergic interneuron CL0011005
    CSI 4.11
    rCSI 64.75%
    PRS 68.74
  • cardiac neuron CL0010022
    CSI 4.03
    rCSI 12.9%
    PRS 61.29
  • fibroblast of cardiac tissue CL0002548
    CSI 4.03
    rCSI 19.3%
    PRS 64.15
  • interneuron CL0000099
    CSI 3.92
    rCSI 7.87%
    PRS 53.28
  • fibroblast of lung CL0002553
    CSI 3.76
    rCSI 3.5%
    PRS 64.92
  • GABAergic neuron CL0000617
    CSI 3.69
    rCSI 12.36%
    PRS 49.08
  • lung macrophage CL1001603
    CSI 3.65
    rCSI 8.16%
    PRS 72.23
  • endothelial cell of pericentral hepatic sinusoid CL0019022
    CSI 3.62
    rCSI 11.16%
    PRS 72.26
  • adventitial cell CL0002503
    CSI 3.62
    rCSI 8.63%
    PRS 72.42
  • peripheral nervous system neuron CL2000032
    CSI 3.56
    rCSI 4.86%
    PRS 55.92
  • CD1c-positive myeloid dendritic cell CL0002399
    CSI 3.55
    rCSI 4.28%
    PRS 73.12
  • glutamatergic neuron CL0000679
    CSI 3.54
    rCSI 7.27%
    PRS 54.02
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 3.51
    rCSI 4.51%
    PRS 61.33
  • erythrocyte CL0000232
    CSI 3.5
    rCSI 7.95%
    PRS 67.82
  • cerebral cortex neuron CL0010012
    CSI 3.45
    rCSI 14.08%
    PRS 58.01
  • ON midget ganglion cell CL4033046
    CSI 3.45
    rCSI 70.34%
    PRS 54.87
  • myeloid leukocyte CL0000766
    CSI 3.45
    rCSI 3.18%
    PRS 65.81
  • ON-bipolar cell CL0000749
    CSI 3.44
    rCSI 5.12%
    PRS 65.66
  • melanocyte CL0000148
    CSI 3.44
    rCSI 2.55%
    PRS 56.76
  • midzonal region hepatocyte CL0019028
    CSI 3.41
    rCSI 7.99%
    PRS 68.33
  • rod bipolar cell CL0000751
    CSI 3.39
    rCSI 6.1%
    PRS 57.51
  • OFF midget ganglion cell CL4033047
    CSI 3.36
    rCSI 68.45%
    PRS 56.34
  • perivascular cell CL4033054
    CSI 3.35
    rCSI 4.58%
    PRS 70.24
  • alternatively activated macrophage CL0000890
    CSI 3.34
    rCSI 4.2%
    PRS 76.22
  • retinal bipolar neuron CL0000748
    CSI 3.34
    rCSI 6.25%
    PRS 52.41
  • forebrain radial glial cell CL0013000
    CSI 3.31
    rCSI 10.61%
    PRS 69
  • Hofbauer cell CL3000001
    CSI 3.3
    rCSI 6.22%
    PRS 74.74
  • hematopoietic stem cell CL0000037
    CSI 3.28
    rCSI 2.18%
    PRS 67.47
  • Schwann cell CL0002573
    CSI 3.27
    rCSI 9.31%
    PRS 62.17
  • vascular associated smooth muscle cell CL0000359
    CSI 3.27
    rCSI 10.59%
    PRS 64.2
  • lung pericyte CL0009089
    CSI 3.21
    rCSI 8.48%
    PRS 72.97
  • extravillous trophoblast CL0008036
    CSI 3.18
    rCSI 3.94%
    PRS 61.02
  • regular ventricular cardiac myocyte CL0002131
    CSI 3.18
    rCSI 19.86%
    PRS 55.99
  • renal beta-intercalated cell CL0002201
    CSI 3.16
    rCSI 7.54%
    PRS 64.81
  • alveolar macrophage CL0000583
    CSI 3.16
    rCSI 5.2%
    PRS 69.62
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 3.13
    rCSI 3.61%
    PRS 57.18
  • lung secretory cell CL1000272
    CSI 3.11
    rCSI 7.71%
    PRS 62.76
  • cerebral cortex GABAergic interneuron CL0010011
    CSI 3.02
    rCSI 8.91%
    PRS 67.03
  • periportal region hepatocyte CL0019026
    CSI 2.95
    rCSI 11.48%
    PRS 68.41
  • cerebral cortex endothelial cell CL1001602
    CSI 2.94
    rCSI 5.08%
    PRS 54.33
  • enteric neuron CL0007011
    CSI 0.1
    rCSI 1.9%
    PRS 77.5%
  • cone retinal bipolar cell CL0000752
    CSI 0.3
    rCSI 3.5%
    PRS 74.7%
  • luminal cell of prostate epithelium CL0002340
    CSI 0.5
    rCSI 2.5%
    PRS 75.8%
  • stromal cell of ovary CL0002132
    CSI 0.5
    rCSI 1.4%
    PRS 76.4%
  • H2 horizontal cell CL0004218
    CSI 0.5
    rCSI 2.6%
    PRS 61.2%
  • enterocyte of epithelium of large intestine CL0002071
    CSI 0.6
    rCSI 3.3%
    PRS 73.4%
  • invaginating midget bipolar cell CL4033034
    CSI 0.7
    rCSI 4.1%
    PRS 58.7%
  • pancreatic ductal cell CL0002079
    CSI 0.7
    rCSI 1.4%
    PRS 67.3%
  • pancreatic epsilon cell CL0005019
    CSI 0.7
    rCSI 3.5%
    PRS 79.9%
  • foveolar cell of stomach CL0002179
    CSI 0.8
    rCSI 1.6%
    PRS 74.9%
  • cerebellar neuron CL1001611
    CSI 0.8
    rCSI 7.1%
    PRS 51.2%
  • mesangial cell CL0000650
    CSI 0.8
    rCSI 3.4%
    PRS 76.0%
  • H1 horizontal cell CL0004217
    CSI 0.9
    rCSI 3.4%
    PRS 63.0%
  • diffuse bipolar 3b cell CL4033030
    CSI 0.9
    rCSI 5.7%
    PRS 61.1%
  • CD14-positive, CD16-negative classical monocyte CL0002057
    CSI 0.9
    rCSI 5.3%
    PRS 81.9%
  • basket cell CL0000118
    CSI 0.9
    rCSI 5.5%
    PRS 46.4%
  • Cajal-Retzius cell CL0000695
    CSI 0.9
    rCSI 6.9%
    PRS 74.7%
  • podocyte CL0000653
    CSI 0.9
    rCSI 4.1%
    PRS 64.1%
  • tissue-resident macrophage CL0000864
    CSI 1.0
    rCSI 4.6%
    PRS 79.9%
  • paneth cell CL0000510
    CSI 1.0
    rCSI 1.5%
    PRS 79.6%
  • kidney connecting tubule epithelial cell CL1000768
    CSI 1.0
    rCSI 2.6%
    PRS 53.6%
  • colon goblet cell CL0009039
    CSI 1.0
    rCSI 2.5%
    PRS 72.8%
  • pancreatic acinar cell CL0002064
    CSI 1.0
    rCSI 1.4%
    PRS 70.8%
  • basal-myoepithelial cell of mammary gland CL0002324
    CSI 1.1
    rCSI 2.0%
    PRS 81.7%
  • keratocyte CL0002363
    CSI 1.1
    rCSI 2.7%
    PRS 71.4%
  • corneal epithelial cell CL0000575
    CSI 1.1
    rCSI 3.2%
    PRS 75.6%
  • regular atrial cardiac myocyte CL0002129
    CSI 1.2
    rCSI 3.7%
    PRS 62.2%
  • intestinal crypt stem cell of small intestine CL0009017
    CSI 1.2
    rCSI 3.1%
    PRS 71.2%
  • type EC enteroendocrine cell CL0000577
    CSI 1.2
    rCSI 4.4%
    PRS 72.3%
  • fibroblast of breast CL4006000
    CSI 1.2
    rCSI 5.2%
    PRS 76.2%
  • alveolar adventitial fibroblast CL4028006
    CSI 1.3
    rCSI 2.0%
    PRS 66.7%
  • neuroendocrine cell CL0000165
    CSI 1.3
    rCSI 5.0%
    PRS 78.1%
  • glycinergic amacrine cell CL4030028
    CSI 1.3
    rCSI 3.4%
    PRS 61.2%
  • tracheobronchial smooth muscle cell CL0019019
    CSI 1.4
    rCSI 2.4%
    PRS 72.4%
  • P/D1 enteroendocrine cell CL0002268
    CSI 1.4
    rCSI 7.4%
    PRS 78.7%
  • intermediate monocyte CL0002393
    CSI 1.4
    rCSI 2.1%
    PRS 68.8%
  • brush cell CL0002204
    CSI 1.5
    rCSI 2.9%
    PRS 79.6%
  • paneth cell of epithelium of small intestine CL1000343
    CSI 1.5
    rCSI 4.1%
    PRS 75.1%
  • retinal pigment epithelial cell CL0002586
    CSI 1.5
    rCSI 3.0%
    PRS 61.6%
  • blood vessel smooth muscle cell CL0019018
    CSI 1.5
    rCSI 12.4%
    PRS 57.6%
  • common dendritic progenitor CL0001029
    CSI 1.6
    rCSI 2.0%
    PRS 74.8%
  • colonocyte CL1000347
    CSI 1.6
    rCSI 2.3%
    PRS 67.4%
  • small intestine goblet cell CL1000495
    CSI 1.6
    rCSI 3.5%
    PRS 72.1%
  • lung ciliated cell CL1000271
    CSI 1.6
    rCSI 1.9%
    PRS 54.6%
  • progenitor cell CL0011026
    CSI 1.7
    rCSI 3.5%
    PRS 62.8%
  • dopaminergic neuron CL0000700
    CSI 1.7
    rCSI 9.3%
    PRS 49.3%
  • promyelocyte CL0000836
    CSI 1.7
    rCSI 2.4%
    PRS 73.5%
  • differentiation-committed oligodendrocyte precursor CL4023059
    CSI 1.7
    rCSI 3.1%
    PRS 55.9%
  • retinal blood vessel endothelial cell CL0002585
    CSI 1.7
    rCSI 2.7%
    PRS 68.5%
  • serotonergic neuron CL0000850
    CSI 1.8
    rCSI 7.8%
    PRS 48.2%
  • microcirculation associated smooth muscle cell CL0008035
    CSI 1.8
    rCSI 5.1%
    PRS 65.6%
  • parietal epithelial cell CL1000452
    CSI 1.8
    rCSI 4.7%
    PRS 55.2%
  • glial cell CL0000125
    CSI 1.8
    rCSI 6.8%
    PRS 54.9%
  • intestinal epithelial cell CL0002563
    CSI 1.8
    rCSI 1.9%
    PRS 62.4%
  • astrocyte of the cerebral cortex CL0002605
    CSI 1.8
    rCSI 4.1%
    PRS 46.4%
  • CD14-low, CD16-positive monocyte CL0002396
    CSI 1.8
    rCSI 1.4%
    PRS 65.1%
  • type B pancreatic cell CL0000169
    CSI 1.8
    rCSI 4.1%
    PRS 62.4%
  • chondrocyte CL0000138
    CSI 1.8
    rCSI 2.9%
    PRS 56.7%
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 1.9
    rCSI 1.7%
    PRS 61.3%
  • type L enteroendocrine cell CL0002279
    CSI 1.9
    rCSI 3.6%
    PRS 78.1%
  • placental villous trophoblast CL2000060
    CSI 1.9
    rCSI 2.9%
    PRS 62.7%
  • colon macrophage CL0009038
    CSI 1.9
    rCSI 8.8%
    PRS 82.0%
  • ciliated epithelial cell CL0000067
    CSI 1.9
    rCSI 1.7%
    PRS 52.2%
  • endothelial cell of placenta CL0009092
    CSI 2.0
    rCSI 9.7%
    PRS 75.2%
  • mature astrocyte CL0002627
    CSI 2.0
    rCSI 8.4%
    PRS 57.3%
  • neural progenitor cell CL0011020
    CSI 2.0
    rCSI 8.7%
    PRS 54.4%
  • respiratory suprabasal cell CL4033048
    CSI 2.0
    rCSI 2.6%
    PRS 69.0%
  • intestinal crypt stem cell of colon CL0009043
    CSI 2.0
    rCSI 15.1%
    PRS 79.5%
  • common myeloid progenitor CL0000049
    CSI 2.1
    rCSI 1.7%
    PRS 65.8%
  • goblet cell CL0000160
    CSI 2.1
    rCSI 2.0%
    PRS 63.7%
  • luminal epithelial cell of mammary gland CL0002326
    CSI 2.1
    rCSI 3.8%
    PRS 78.9%
  • CD14-positive, CD16-positive monocyte CL0002397
    CSI 2.1
    rCSI 2.7%
    PRS 77.6%
  • cardiac muscle cell CL0000746
    CSI 2.1
    rCSI 3.0%
    PRS 53.9%
  • amacrine cell CL0000561
    CSI 2.1
    rCSI 6.1%
    PRS 53.8%
  • elicited macrophage CL0000861
    CSI 2.1
    rCSI 2.0%
    PRS 73.3%
  • epithelial cell of lung CL0000082
    CSI 2.2
    rCSI 1.8%
    PRS 63.7%
  • kidney loop of Henle thin descending limb epithelial cell CL1001111
    CSI 2.3
    rCSI 3.2%
    PRS 60.6%
  • lung interstitial macrophage CL4033043
    CSI 2.3
    rCSI 5.1%
    PRS 80.7%
  • macroglial cell CL0000126
    CSI 2.3
    rCSI 5.9%
    PRS 63.3%
  • alveolar type 1 fibroblast cell CL4028004
    CSI 2.3
    rCSI 2.5%
    PRS 68.0%
  • cardiac endothelial cell CL0010008
    CSI 2.3
    rCSI 9.4%
    PRS 63.1%
  • retina horizontal cell CL0000745
    CSI 2.3
    rCSI 3.6%
    PRS 60.8%
  • conjunctival epithelial cell CL1000432
    CSI 2.3
    rCSI 3.6%
    PRS 65.0%
  • dendritic cell, human CL0001056
    CSI 2.3
    rCSI 3.6%
    PRS 73.5%
  • enteric smooth muscle cell CL0002504
    CSI 2.4
    rCSI 3.4%
    PRS 66.4%
  • OFF-bipolar cell CL0000750
    CSI 2.4
    rCSI 3.3%
    PRS 70.5%
  • mucus secreting cell CL0000319
    CSI 2.5
    rCSI 4.0%
    PRS 75.2%
  • pulmonary alveolar type 2 cell CL0002063
    CSI 2.5
    rCSI 3.9%
    PRS 71.4%
  • BEST4+ enteroycte CL4030026
    CSI 2.5
    rCSI 3.1%
    PRS 65.9%
  • IgA plasma cell CL0000987
    CSI 2.5
    rCSI 2.6%
    PRS 77.9%
  • kidney loop of Henle thin ascending limb epithelial cell CL1001107
    CSI 2.5
    rCSI 6.6%
    PRS 59.3%
  • granulocyte CL0000094
    CSI 2.6
    rCSI 4.0%
    PRS 73.5%
  • colon epithelial cell CL0011108
    CSI 2.6
    rCSI 2.8%
    PRS 60.7%
  • enteroendocrine cell of small intestine CL0009006
    CSI 2.7
    rCSI 5.8%
    PRS 76.3%
  • ependymal cell CL0000065
    CSI 2.7
    rCSI 5.4%
    PRS 43.2%
  • adipocyte CL0000136
    CSI 2.7
    rCSI 3.4%
    PRS 56.5%
  • epithelial cell of lower respiratory tract CL0002632
    CSI 2.7
    rCSI 2.1%
    PRS 66.7%
  • myeloid dendritic cell CL0000782
    CSI 2.8
    rCSI 4.0%
    PRS 79.9%
  • syncytiotrophoblast cell CL0000525
    CSI 2.8
    rCSI 8.0%
    PRS 76.9%
  • indirect pathway medium spiny neuron CL4023029
    CSI 2.9
    rCSI 69.0%
    PRS 45.5%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [ATP6V0A1](/details-gene/535) encodes the a1 subunit of the V0 domain of the vacuolar H+-ATPase (V-ATPase), a fundamental multi-subunit enzyme responsible for acidifying intracellular organelles. This proton pump is critical for a variety of cellular processes, including protein degradation in lysosomes, endosomal receptor sorting, and neurotransmitter loading into synaptic vesicles. Expression data highlights its profound importance in the central nervous system, where it shows exceptionally high significance across a wide range of neuronal subtypes, including both GABAergic and glutamatergic neurons. Consistent with its essential role in neuronal function, mutations in [ATP6V0A1](/details-gene/535) are associated with severe neurological disorders, including developmental and epileptic encephalopathy and progressive myoclonus epilepsy ([192130](https://omim.org/entry/192130)). ## Cellular Roles and Expression Landscape The expression profile of [ATP6V0A1](/details-gene/535) underscores its vital role in the nervous system. **Overall**, the gene exhibits its highest significance in a diverse array of [neurons](/details-cell/CL0000540), suggesting it is a core component of neuronal physiology. Its significance is most pronounced in cortical interneurons, including [sncg GABAergic cortical interneurons](/details-cell/CL4023015) (CSI: 37.85), [lamp5 GABAergic cortical interneurons](/details-cell/CL4023011) (CSI: 36.13), and [sst GABAergic cortical interneurons](/details-cell/CL4023017) (CSI: 30.96). High significance is also observed in excitatory neurons, such as [L2/3-6 intratelencephalic projecting glutamatergic neurons](/details-cell/CL4023040) (CSI: 26.11) and [L6b glutamatergic cortical neurons](/details-cell/CL4023038) (CSI: 21.19). This broad expression across both inhibitory and excitatory neuronal populations indicates a universally critical function, likely tied to the maintenance of synaptic vesicle gradients necessary for neurotransmission. Its importance extends to other neuronal cell types, including [retinal ganglion cells](/details-cell/CL0000740) (CSI: 21.41), further emphasizing its foundational role in neural circuit operation. ## Pathways and Molecular Function Functionally, [ATP6V0A1](/details-gene/535) is an integral component of the [vacuolar proton-transporting V-type ATPase, V0 domain](/details-ontology/GO:0000220), which mediates [proton transmembrane transport](/details-ontology/GO:1902600). This activity is central to numerous biological processes. The gene's most prominent role is the acidification of various intracellular compartments, including the [lysosomal lumen](/details-ontology/GO:0007042), [endosomal lumen](/details-ontology/GO:0048388), and [synaptic vesicle lumen](/details-ontology/GO:0097401). This function directly supports its high expression in neurons, as the electrochemical proton gradient generated by V-ATPase is essential for loading neurotransmitters into synaptic vesicles. Beyond neurotransmission, its role in lysosomal function connects it to the [regulation of macroautophagy](/details-ontology/GO:0016241), a key cellular quality control mechanism. Reactome pathway analysis further links [ATP6V0A1](/details-gene/535) to processes such as [Neutrophil degranulation](/details-pathway/R-HSA-6798695) and [Iron uptake and transport](/details-pathway/R-HSA-917937), indicating broader roles in the [innate immune system](/details-pathway/R-HSA-168249) and general molecular transport. Its involvement in these pathways is consistent with the V-ATPase's ubiquitous role in organellar function across different cell types. Recent studies have confirmed that mutations in this gene are causative for severe brain development defects, underscoring its indispensable nature ([Link](https://doi.org/10.1038/s41467-021-22389-5), [Link](https://doi.org/10.1093/braincomms/fcab245)). ## Research Directions The critical and ubiquitous role of [ATP6V0A1](/details-gene/535) in neuronal function provides a foundation for several key research questions, particularly regarding its contribution to neurological disease. **Proposed Hypotheses:** 1. **Cell-type specific consequences of dysfunction:** Given its high significance across diverse neuronal populations, it is hypothesized that partial loss-of-function of [ATP6V0A1](/details-gene/535) differentially impacts inhibitory versus excitatory neurons, leading to an excitation/inhibition imbalance that underlies the epileptic phenotypes seen in patients. 2. **Role in neurodegeneration:** Based on its function in lysosomal acidification and autophagy, it is hypothesized that subtle, age-related declines in V-ATPase efficiency contribute to the accumulation of toxic protein aggregates, positioning [ATP6V0A1](/details-gene/535) as a potential factor in the pathogenesis of common neurodegenerative diseases. **Experimental Approach:** To test the hypothesis of excitation/inhibition imbalance (Hypothesis 1), a compelling approach would be to use CRISPR-Cas9 to introduce a known pathogenic, partial loss-of-function mutation into human induced pluripotent stem cells (iPSCs). These iPSCs could then be differentiated into distinct cultures of cortical glutamatergic neurons and GABAergic interneurons. By performing patch-clamp electrophysiology and calcium imaging on these separate neuronal populations, one could directly measure cell-intrinsic firing properties and synaptic function, revealing whether inhibitory interneurons, for example, are more vulnerable to V-ATPase dysfunction than their excitatory counterparts. **Therapeutic Potential:** [ATP6V0A1](/details-gene/535) is a challenging therapeutic target. Its essential role in fundamental cellular processes across nearly all cell types suggests that systemic inhibition would likely lead to severe toxicity. Indeed, complete loss of function is incompatible with normal brain development ([Link](https://doi.org/10.1038/s41467-021-22389-5)). Therefore, therapeutic strategies should avoid inhibition. For diseases caused by haploinsufficiency or missense mutations, developing small molecules that could stabilize the V-ATPase complex or enhance its activity might represent a viable, albeit difficult, therapeutic avenue. Such an approach would require exquisite specificity to avoid over-acidification of organelles and other off-target effects.

Genular Protein ID: 1361359308

Symbol: VPP1_HUMAN

Name: V-type proton ATPase 116 kDa subunit a 1

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 16625196

Title: DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage.

PubMed ID: 16625196

DOI: 10.1038/nature04689

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 17974005

Title: The full-ORF clone resource of the German cDNA consortium.

PubMed ID: 17974005

DOI: 10.1186/1471-2164-8-399

PubMed ID: 12643545

Title: Proteomic analysis of early melanosomes: identification of novel melanosomal proteins.

PubMed ID: 12643545

DOI: 10.1021/pr025562r

PubMed ID: 17081065

Title: Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes.

PubMed ID: 17081065

DOI: 10.1021/pr060363j

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 28024296

Title: mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide.

PubMed ID: 28024296

DOI: 10.1038/nature21034

PubMed ID: 33065002

Title: Structures of a Complete Human V-ATPase Reveal Mechanisms of Its Assembly.

PubMed ID: 33065002

DOI: 10.1016/j.molcel.2020.09.029

PubMed ID: 34909687

Title: Variants in ATP6V0A1 cause progressive myoclonus epilepsy and developmental and epileptic encephalopathy.

PubMed ID: 34909687

DOI: 10.1093/braincomms/fcab245

PubMed ID: 33833240

Title: ATP6V0A1 encoding the a1-subunit of the V0 domain of vacuolar H+-ATPases is essential for brain development in humans and mice.

PubMed ID: 33833240

DOI: 10.1038/s41467-021-22389-5

Sequence Information:

  • Length: 837
  • Mass: 96413
  • Checksum: 80E4842CF6ADEE44
  • Sequence:
  • MGELFRSEEM TLAQLFLQSE AAYCCVSELG ELGKVQFRDL NPDVNVFQRK FVNEVRRCEE 
    MDRKLRFVEK EIRKANIPIM DTGENPEVPF PRDMIDLEAN FEKIENELKE INTNQEALKR 
    NFLELTELKF ILRKTQQFFD EMADPDLLEE SSSLLEPSEM GRGTPLRLGF VAGVINRERI 
    PTFERMLWRV CRGNVFLRQA EIENPLEDPV TGDYVHKSVF IIFFQGDQLK NRVKKICEGF 
    RASLYPCPET PQERKEMASG VNTRIDDLQM VLNQTEDHRQ RVLQAAAKNI RVWFIKVRKM 
    KAIYHTLNLC NIDVTQKCLI AEVWCPVTDL DSIQFALRRG TEHSGSTVPS ILNRMQTNQT 
    PPTYNKTNKF TYGFQNIVDA YGIGTYREIN PAPYTIITFP FLFAVMFGDF GHGILMTLFA 
    VWMVLRESRI LSQKNENEMF STVFSGRYII LLMGVFSMYT GLIYNDCFSK SLNIFGSSWS 
    VRPMFTYNWT EETLRGNPVL QLNPALPGVF GGPYPFGIDP IWNIATNKLT FLNSFKMKMS 
    VILGIIHMLF GVSLSLFNHI YFKKPLNIYF GFIPEIIFMT SLFGYLVILI FYKWTAYDAH 
    TSENAPSLLI HFINMFLFSY PESGYSMLYS GQKGIQCFLV VVALLCVPWM LLFKPLVLRR 
    QYLRRKHLGT LNFGGIRVGN GPTEEDAEII QHDQLSTHSE DADEPSEDEV FDFGDTMVHQ 
    AIHTIEYCLG CISNTASYLR LWALSLAHAQ LSEVLWTMVI HIGLSVKSLA GGLVLFFFFT 
    AFATLTVAIL LIMEGLSAFL HALRLHWVEF QNKFYSGTGF KFLPFSFEHI REGKFEE

Genular Protein ID: 3091214484

Symbol: Q53X12_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Sequence Information:

  • Length: 831
  • Mass: 95751
  • Checksum: A3D85B27CA2AC55E
  • Sequence:
  • MGELFRSEEM TLAQLFLQSE AAYCCVSELG ELGKVQFRDL NPDVNVFQRK FVNEVRRCEE 
    MDRKLRFVEK EIRKANIPIM DTGENPEVPF PRDMIDLEAN FEKIENELKE INTNQEALKR 
    NFLELTELKF ILRKTQQFFD EMADPDLLEE SSSLLEPSEM GRGTPLRLGF VAGVINRERI 
    PTFERMLWRV CRGNVFLRQA EIENPLEDPV TGDYVHKSVF IIFFQGDQLK NRVKKICEGF 
    RASLYPCPET PQERKEMASG VNTRIDDLQM VLNQTEDHRQ RVLQAAAKNI RVWFIKVRKM 
    KAIYHTLNLC NIDVTQKCLI AEVWCPVTDL DSIQFALRRG TEHSGSTVPS ILNRMQTNQT 
    PPTYNKTNKF TYGFQNIVDA YGIGTYREIN PAPYTIITFP FLFAVMFGDF GHGILMTLFA 
    VWMVLRESRI LSQKNENEMF STVFSGRYII LLMGVFSMYT GLIYNDCFSK SLNIFGSSWS 
    VRPMFTYNWT EETLRGNPVL QLNPALPGVF GGPYPFGIDP IWNIATNKLT FLNSFKMKMS 
    VILGIIHMLF GVSLSLFNHI YFKKPLNIYF GFIPEIIFMT SLFGYLVILI FYKWTAYDAH 
    TSENAPSLLI HFINMFLFSY PESGYSMLYS GQKGIQCFLV VVALLCVPWM LLFKPLVLRR 
    QYLRRKHLGT LNFGGIRVGN GPTEEDAEII QHDQLSTHSE DADEFDFGDT MVHQAIHTIE 
    YCLGCISNTA SYLRLWALSL AHAHVSEVLW TMVIHIGLSV KSLAGGLVLF FFFTAFATLT 
    VAILLIMEGL SAFLHALRLH WVEFQNKFYS GTGFKFLPFS FEHIREGKFE E

Genular Protein ID: 3909198861

Symbol: Q53ET5_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 8125298

Title: Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides.

PubMed ID: 8125298

DOI: 10.1016/0378-1119(94)90802-8

PubMed ID: 9373149

Title: Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library.

PubMed ID: 9373149

DOI: 10.1016/S0378-1119(97)00411-3

Sequence Information:

  • Length: 831
  • Mass: 95804
  • Checksum: 0C84BE64B8CC0D03
  • Sequence:
  • MGELFRSEEM TLAQLFLQSE AAYCCVSELG ELGKVQFRDL NPYVNVFQRK FVNEVRRCEE 
    MDRKLRFVEK EIRKANIPIM DTGENPEVPF PRDMIDLEAN FEKIENELKE INTNQEALKR 
    NFLELTELKF ILRKTQQFFD EMADPDLLEE SSSLLEPSEM GRGTPLRLGF VAGVINRERI 
    PTFERMLWRV CRGNVFLRQA EIENPLEDPV TGDYVHKSVF IIFFQGDQLK NRVKKICEGF 
    RASLYPCPET PQERKEMASG VNTRIDDLQM VLNQTEDHRQ RVLQAAAKNI RVWFIKVRKM 
    KAIYHTLNLC NIDVTQKCLI AEVWCPVTDL DSIQFALRRG TEHSGSTVPS ILNRMQTNQT 
    PPTYNKTNKF TYGFQNIVDA YGIGTYREIN PAPYTIITFP FLFAVMFGDF GHGILMTLFA 
    VWMVLRESRI LSQKNENEMF STVFSGRYII LLMGVFSMYT GLIYNDCFSK SLNIFGSSWS 
    VRPMFTYNWT EETLRGNPVL QLNPALPGVF GGPYPFGIDP IWNIATNKLT FLNSFKMKMS 
    VILGIIHMLF GVSLSLFNHI YFKKPLNIYF GFIPEIIFMT SLFGYLVILI FYKWTAYDAH 
    TSENAPSLLI HFINMFLFSY PESGYSMLYS GQKGIQCFLV VVALLCVPWM LLFKPLVLRR 
    QYLRRKHLGT LNFGGIRVGN GPTEEDAEII QHDQLSTHSE DADEFDFGDT MVHQAIHTIE 
    YCLGCISNTA SYLRLWALSL AHAQLSEVLW TMVIHIGLSV KSLAGGLVLF FFFTAFATLT 
    VAILLIMEGL SAFLHALRLH WVEFQNKFYS GTGFKFLPFS FEHIREGKFE E

Genular Protein ID: 2554519332

Symbol: Q5CZH6_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Sequence Information:

  • Length: 838
  • Mass: 96603
  • Checksum: 20E56A8DA482FDB7
  • Sequence:
  • MGELFRSEEM TLAQLFLQSE AAYCCVSELG ELGKVQFRDL NPDVNVFQRK FVNEVRRCEE 
    MDRKLRFVEK EIRKANIPIM DTGENPEVPF PRDMIDLEAN FEKIENELKE INTNQEALKR 
    NFLELTELKF ILRKTQQFFD EAELHHQQMA DPDLLEESSS LLEPSEMGRG TPLRLGFVAG 
    VINRERIPTF ERMLWRVCRG NVFLRQAEIE NPLEDPVTGD YVHKSVFIIF FQGDQLKNRV 
    KKICEGFRAS LYPCPETPQE RKEMASGVST RIDDLQMVLN QMEDHRQRVL QAAAKNIRVW 
    FIKVRKMKAI YHTLNLCNID VTQKCLIAEV WCPVTDLDSI QFALRRGTEH SGSTVPSILN 
    RMQTNQTPPT YNKTNKFTYG FQNIVDAYGI GTYREINPAP YTIITFPFLF AVMFGDFGHG 
    ILMTLFAVWM VLRESRILSQ KNENEMFSTV FSGRYIILLM GVFSMYTGLI YNDCFSKSLN 
    IFGSSWSVRP MFTYNWTEET LRGNPVLQLN PALPGVFGGP YPFGIDPIWN IATNKLTFLN 
    SFKMKMSVIL GIIHMLFGVS LSLFNHIYFK KPLNIYFGFI PEIIFMTSLF GYLVILIFYK 
    WTAYDAHTSE NAPSLLIHFI NMFLFSYPES GYSMLYSGQK GIQCFLVVVA LLCVPWMLLF 
    KPLVLRRQYL RRKHLGTLNF GGIRVGNGPT EEDAEIIQHD QLSTHSEDAD EFDFGDTMVH 
    QAIHTIEYCL GCISNTASYL RLWALSLAHA QLSEVLWTMV IHIGLSVKSL AGGLVLFFFF 
    TAFATLTVAI LLIMEGLSAF LHALRLHWVE FQNKFYSGTG FKFLPFSFEH IREGKFEE