Details for: hoxc6b

Gene ID: 58045

Symbol: hoxc6b

Ensembl ID: ENSDARG00000101954

Description: homeobox C6b

Associated with

  • Anterior/posterior pattern specification
    (GO:0009952)
  • Dna-binding transcription factor activity
    (GO:0003700)
  • Dna-binding transcription factor activity, rna polymerase ii-specific
    (GO:0000981)
  • Dna binding
    (GO:0003677)
  • Nucleus
    (GO:0005634)
  • Regulation of dna-templated transcription
    (GO:0006355)
  • Regulation of transcription by rna polymerase ii
    (GO:0006357)
  • Rna polymerase ii cis-regulatory region sequence-specific dna binding
    (GO:0000978)

Other Information

Genular Protein ID: 1627746445

Symbol: A0A2R8QUV2_DANRE

Name: N/A

UniProtKB Accession Codes:

A0A2R8QUV2 A0A8M2BK36

Database IDs:

ARBA 7 Bgee 1 CDD 1 CTD 1 EMBL 1 Ensembl 3 GO 3 Gene3D 1 InterPro 5 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PRINTS 1 PROSITE 4 PROSITE-ProRule 1 Pfam 1 Proteomes 2 RefSeq 2 RuleBase 1 SAM 1 SMART 1 SUPFAM 1 ZFIN 2

Citations:

PubMed ID: 23594743

Title: The zebrafish reference genome sequence and its relationship to the human genome.

PubMed ID: 23594743

DOI: 10.1038/nature12111

Sequence Information:

  • Length: 228
  • Mass: 26367
  • Checksum: 2D1D351879484815
  • Sequence:
    • MNSYFTNPSL SCHLNSGQEV LPSVAISSTN YDPVRHFSPY GAAVAQNRIY SNPFYSHQEN 
VMFGSSRPYD YGSNMFYQDK DVLPSCRQGF GQTQGSLTQD YASDQGKTME PKGSVQIYPW 
MQRMNSHSGV GYGSDRRRGR QIYSRYQTLE LEKEFHYNRY LTRRRRIEIA NTLCLSERQI 
KIWFQNRRMK WKKESNLTSI LNDNGSVGAG QDTDKEETGE TAEKDEHD

Genular Protein ID: 1740116810

Symbol: A0A8M1P8V2_DANRE

Name: N/A

UniProtKB Accession Codes:

A0A8M1P8V2

Database IDs:

ARBA 7 CDD 1 CTD 1 GO 3 Gene3D 1 InterPro 5 KEGG 1 NCBI Taxonomy 1 PANTHER 2 PRINTS 1 PROSITE 4 PROSITE-ProRule 1 Pfam 1 Proteomes 2 RefSeq 2 RuleBase 1 SAM 1 SMART 1 SUPFAM 1 ZFIN 2

Citations:

PubMed ID: 15385162

Title: Differences in expression pattern and function between zebrafish hoxc13 orthologs: recruitment of Hoxc13b into an early embryonic role.

PubMed ID: 15385162

DOI: 10.1016/j.ydbio.2004.07.018

PubMed ID: 15105502

Title: MicroRNA-directed cleavage of HOXB8 mRNA.

PubMed ID: 15105502

PubMed ID: 16174031

Title: Genomic annotation and transcriptome analysis of the zebrafish (Danio rerio) hox complex with description of a novel member, hoxb13a.

PubMed ID: 16174031

DOI: 10.1111/j.1525-142X.2005.05042.x

PubMed ID: 15716008

Title: Organization and base composition of tilapia Hox genes: implications for the evolution of Hox clusters in fish.

PubMed ID: 15716008

DOI: 10.1016/j.gene.2004.10.027

PubMed ID: 16472944

Title: Organization and structure of hox gene loci in medaka genome and comparison with those of pufferfish and zebrafish genomes.

PubMed ID: 16472944

DOI: 10.1016/j.gene.2005.11.015

PubMed ID: 23594743

Title: The zebrafish reference genome sequence and its relationship to the human genome.

PubMed ID: 23594743

DOI: 10.1038/nature12111

PubMed ID: 26335559

Title: Spatiotemporal analysis of zebrafish hox gene regulation by Cdx4.

PubMed ID: 26335559

PubMed ID: 27189481

Title: Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

PubMed ID: 27189481

PubMed ID: 29225029

Title: Vagus Motor Neuron Topographic Map Determined by Parallel Mechanisms of hox5 Expression and Time of Axon Initiation.

PubMed ID: 29225029

PubMed ID: 28756106

Title: Comprehensive analysis of target genes in zebrafish embryos reveals gbx2 involvement in neurogenesis.

PubMed ID: 28756106

PubMed ID: 29684203

Title: The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes.

PubMed ID: 29684203

Sequence Information:

  • Length: 214
  • Mass: 24848
  • Checksum: 01A2791C7E192E94
  • Sequence:
    • MFGQEVLPSV AISSTNYDPV RHFSPYGAAV AQNRIYSNPF YSHQENVMFG SSRPYDYGSN 
MFYQDKDVLP SCRQGFGQTQ GSLTQDYASD QGKTMEPKGS VQIYPWMQRM NSHSGVGYGS 
DRRRGRQIYS RYQTLELEKE FHYNRYLTRR RRIEIANTLC LSERQIKIWF QNRRMKWKKE 
SNLTSILNDN GSVGAGQDTD KEETGETAEK DEHD

Genular Protein ID: 3910987257

Symbol: A0A2R8Q006_DANRE

Name: N/A

UniProtKB Accession Codes:

A0A2R8Q006 A0A8M1PC79

Database IDs:

ARBA 7 Bgee 1 CDD 1 CTD 1 EMBL 1 Ensembl 3 GO 3 Gene3D 1 InterPro 5 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PRINTS 1 PROSITE 4 PROSITE-ProRule 1 Pfam 1 Proteomes 2 RefSeq 2 RuleBase 1 SAM 1 SMART 1 SUPFAM 1 ZFIN 2

Citations:

PubMed ID: 15385162

Title: Differences in expression pattern and function between zebrafish hoxc13 orthologs: recruitment of Hoxc13b into an early embryonic role.

PubMed ID: 15385162

DOI: 10.1016/j.ydbio.2004.07.018

PubMed ID: 15105502

Title: MicroRNA-directed cleavage of HOXB8 mRNA.

PubMed ID: 15105502

PubMed ID: 16174031

Title: Genomic annotation and transcriptome analysis of the zebrafish (Danio rerio) hox complex with description of a novel member, hoxb13a.

PubMed ID: 16174031

DOI: 10.1111/j.1525-142X.2005.05042.x

PubMed ID: 15716008

Title: Organization and base composition of tilapia Hox genes: implications for the evolution of Hox clusters in fish.

PubMed ID: 15716008

DOI: 10.1016/j.gene.2004.10.027

PubMed ID: 16472944

Title: Organization and structure of hox gene loci in medaka genome and comparison with those of pufferfish and zebrafish genomes.

PubMed ID: 16472944

DOI: 10.1016/j.gene.2005.11.015

PubMed ID: 23594743

Title: The zebrafish reference genome sequence and its relationship to the human genome.

PubMed ID: 23594743

DOI: 10.1038/nature12111

PubMed ID: 26335559

Title: Spatiotemporal analysis of zebrafish hox gene regulation by Cdx4.

PubMed ID: 26335559

PubMed ID: 27189481

Title: Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

PubMed ID: 27189481

PubMed ID: 29225029

Title: Vagus Motor Neuron Topographic Map Determined by Parallel Mechanisms of hox5 Expression and Time of Axon Initiation.

PubMed ID: 29225029

PubMed ID: 28756106

Title: Comprehensive analysis of target genes in zebrafish embryos reveals gbx2 involvement in neurogenesis.

PubMed ID: 28756106

PubMed ID: 29684203

Title: The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes.

PubMed ID: 29684203

Sequence Information:

  • Length: 227
  • Mass: 26379
  • Checksum: 77BC18C73420BC4D
  • Sequence:
    • MNSYFTNPSL SCHLNSGQEV LPSVAISSTN YDPVRHFSPY GAAVAQNRIY SNPFYSHQEN 
VMFGSSRPYD YGSNMFYQDK DVLPSCRQGF GQTQGSLTQD YASDQGKTME PKGSVQIYPW 
MQRMNSHRVG YGSDRRRGRQ IYSRYQTLEL EKEFHYNRYL TRRRRIEIAN TLCLSERQIK 
IWFQNRRMKW KKESNLTSIL NDNGSVGAGQ DTDKEETGET AEKDEHD

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.