Details for: BBS4
Gene ID: 585
Gene Type: Protein-coding - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.
Symbol: BBS4
Ensembl ID: ENSG00000140463
Description: Bardet-Biedl syndrome 4
Selected Context(s): Overall
Cell Significance Landscape
Associated with
Significant Cells
Cell Significance Index (CSI) scores for the chosen context(s)
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CSI 4.41rCSI 7.41%PRS 71.66
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CSI 3.93rCSI 4.71%PRS 85.24
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CSI 3.86rCSI 8.54%PRS 86.71
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CSI 3.51rCSI 3.46%PRS 88.57
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CSI 3.21rCSI 20.07%PRS 79.75
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CSI 3.13rCSI 3.28%PRS 89.33
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CSI 3.09rCSI 3.94%PRS 90.93
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CSI 3.06rCSI 2.49%PRS 86.39
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CSI 2.88rCSI 2.13%PRS 82.1
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CSI 2.88rCSI 2.27%PRS 78.15
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CSI 2.87rCSI 2.67%PRS 87.91
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CSI 2.7rCSI 3.36%PRS 69.51
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CSI 2.69rCSI 2.69%PRS 81.16
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CSI 2.69rCSI 5.4%PRS 79.38
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CSI 2.68rCSI 4.38%PRS 78.35
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CSI 2.59rCSI 3.83%PRS 89.25
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CSI 2.59rCSI 3.85%PRS 86.25
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CSI 2.45rCSI 9.17%PRS 81.05
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CSI 2.35rCSI 4.07%PRS 80.25
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CSI 2.32rCSI 4.07%PRS 82.24
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CSI 2.29rCSI 5.23%PRS 79.57
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CSI 2.29rCSI 3.71%PRS 81.49
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CSI 2.29rCSI 4.54%PRS 83.02
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CSI 2.24rCSI 2.4%PRS 88.81
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CSI 2.19rCSI 1.93%PRS 77.5
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CSI 2.19rCSI 6.99%PRS 85.04
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CSI 2.1rCSI 3.7%PRS 82.35
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CSI 2.08rCSI 3.73%PRS 81.23
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CSI 2.07rCSI 5.12%PRS 87.2
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CSI 2.06rCSI 3.31%PRS 78.23
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CSI 2.05rCSI 2.9%PRS 84.05
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CSI 2.04rCSI 2.35%PRS 80.6
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CSI 1.99rCSI 3.16%PRS 81.36
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CSI 1.99rCSI 5.75%PRS 86.13
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CSI 1.98rCSI 5.13%PRS 83.3
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CSI 1.93rCSI 3.92%PRS 67.64
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CSI 1.92rCSI 3.07%PRS 78.9
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CSI 1.91rCSI 3.58%PRS 77.16
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CSI 1.9rCSI 2.45%PRS 72.82
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CSI 1.88rCSI 2.61%PRS 85.19
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CSI 1.84rCSI 2.36%PRS 83.27
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CSI 1.83rCSI 4.11%PRS 72.39
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CSI 1.83rCSI 3.32%PRS 79.57
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CSI 1.73rCSI 2%PRS 79.38
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CSI 1.69rCSI 2.02%PRS 71.82
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CSI 1.62rCSI 4.12%PRS 79.11
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CSI 1.61rCSI 2.2%PRS 79.73
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CSI 1.49rCSI 2.4%PRS 72.89
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CSI 1.46rCSI 2.57%PRS 71.15
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CSI 1.39rCSI 2%PRS 78.03
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CSI 1.39rCSI 4.02%PRS 77.55
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CSI 1.18rCSI 5.2%PRS 81.48
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CSI 1.13rCSI 2.5%PRS 74.69
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CSI 1.06rCSI 2.84%PRS 80.18
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CSI 1.06rCSI 6.22%PRS 72.07
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CSI 1.02rCSI 7.5%PRS 76.42
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CSI 0.99rCSI 2.41%PRS 69.43
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CSI 0.96rCSI 3.64%PRS 79.31
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CSI 0.94rCSI 4.17%PRS 87.49
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CSI 0.92rCSI 2.11%PRS 80.05
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CSI 0.92rCSI 4.06%PRS 75.56
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CSI 0.74rCSI 4.2%PRS 74.64
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CSI 0.62rCSI 2.36%PRS 71.95
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CSI 0.62rCSI 1.95%PRS 75.15
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CSI 0.56rCSI 1.76%PRS 72.99
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CSI 0.48rCSI 3.9%PRS 82.84
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CSI 0.43rCSI 1.54%PRS 69.63
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CSI 0.23rCSI 2.02%PRS 77.02
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration
Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.
Legend:
- Query Gene
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Node Color (Target Cell CSI, relative to current network):
- Very High
- High
- Medium
- Low
- Very Low
- CSI N/A
- Node Size: Proportional to Target Cell CSI magnitude
- STRING PPI Edge
- Shared Pathway Edge (ONTOLOGY)
Other Information
This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.
Genular Protein ID: 3787677986
Symbol: BBS4_HUMAN
Name: Bardet-Biedl syndrome 4 protein
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 11381270
Title: Identification of the gene that, when mutated, causes the human obesity syndrome BBS4.
PubMed ID: 11381270
DOI: 10.1038/88925
PubMed ID: 15497446
Title: Cloning and characterization of a splice variant of human Bardet-Biedl syndrome 4 gene (BBS4).
PubMed ID: 15497446
PubMed ID: 14702039
Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.
PubMed ID: 14702039
DOI: 10.1038/ng1285
PubMed ID: 16572171
Title: Analysis of the DNA sequence and duplication history of human chromosome 15.
PubMed ID: 16572171
DOI: 10.1038/nature04601
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 16327777
Title: Dissection of epistasis in oligogenic Bardet-Biedl syndrome.
PubMed ID: 16327777
DOI: 10.1038/nature04370
PubMed ID: 17574030
Title: A core complex of BBS proteins cooperates with the GTPase Rab8 to promote ciliary membrane biogenesis.
PubMed ID: 17574030
PubMed ID: 18000879
Title: Novel interaction partners of Bardet-Biedl syndrome proteins.
PubMed ID: 18000879
DOI: 10.1002/cm.20250
PubMed ID: 23943788
Title: BBS mutations modify phenotypic expression of CEP290-related ciliopathies.
PubMed ID: 23943788
DOI: 10.1093/hmg/ddt394
PubMed ID: 24939912
Title: Bardet-Biedl syndrome proteins 1 and 3 regulate the ciliary trafficking of polycystic kidney disease 1 protein.
PubMed ID: 24939912
DOI: 10.1093/hmg/ddu267
PubMed ID: 15107855
Title: The Bardet-Biedl protein BBS4 targets cargo to the pericentriolar region and is required for microtubule anchoring and cell cycle progression.
PubMed ID: 15107855
DOI: 10.1038/ng1352
PubMed ID: 22072986
Title: A novel protein LZTFL1 regulates ciliary trafficking of the BBSome and Smoothened.
PubMed ID: 22072986
PubMed ID: 33144677
Title: Dlec1 is required for spermatogenesis and male fertility in mice.
PubMed ID: 33144677
PubMed ID: 12016587
Title: BBS4 is a minor contributor to Bardet-Biedl syndrome and may also participate in triallelic inheritance.
PubMed ID: 12016587
DOI: 10.1086/341031
PubMed ID: 12677556
Title: Genetic interaction of BBS1 mutations with alleles at other BBS loci can result in non-Mendelian Bardet-Biedl syndrome.
PubMed ID: 12677556
DOI: 10.1086/375178
PubMed ID: 12872256
Title: Evaluation of multiplex capillary heteroduplex analysis: a rapid and sensitive mutation screening technique.
PubMed ID: 12872256
DOI: 10.1002/humu.10241
PubMed ID: 12920096
Title: Further support for digenic inheritance in Bardet-Biedl syndrome.
PubMed ID: 12920096
PubMed ID: 15666242
Title: Antenatal presentation of Bardet-Biedl syndrome may mimic Meckel syndrome.
PubMed ID: 15666242
DOI: 10.1086/428679
PubMed ID: 15770229
Title: Testing for triallelism: analysis of six BBS genes in a Bardet-Biedl syndrome family cohort.
PubMed ID: 15770229
PubMed ID: 21344540
Title: BBS genotype-phenotype assessment of a multiethnic patient cohort calls for a revision of the disease definition.
PubMed ID: 21344540
DOI: 10.1002/humu.21480
Sequence Information:
- Length: 519
- Mass: 58282
- Checksum: 59BC9B29355C8E3C
- Sequence:
MAEERVATRT QFPVSTESQK PRQKKAPEFP ILEKQNWLIH LHYIRKDYEA CKAVIKEQLQ ETQGLCEYAI YVQALIFRLE GNIQESLELF QTCAVLSPQS ADNLKQVARS LFLLGKHKAA IEVYNEAAKL NQKDWEISHN LGVCYIYLKQ FNKAQDQLHN ALNLNRHDLT YIMLGKIHLL EGDLDKAIEV YKKAVEFSPE NTELLTTLGL LYLQLGIYQK AFEHLGNALT YDPTNYKAIL AAGSMMQTHG DFDVALTKYR VVACAVPESP PLWNNIGMCF FGKKKYVAAI SCLKRANYLA PFDWKILYNL GLVHLTMQQY ASAFHFLSAA INFQPKMGEL YMLLAVALTN LEDIENAKRA YAEAVHLDKC NPLVNLNYAV LLYNQGEKKN ALAQYQEMEK KVSLLKDNSS LEFDSEMVEM AQKLGAALQV GEALVWTKPV KDPKSKHQTT STSKPASFQQ PLGSNQALGQ AMSSAAAYRT LPSGAGGTSQ FTKPPSLPLE PEPAVESSPT ETSEQIREK