Details for: pax5

Gene ID: 60636

Symbol: pax5

Ensembl ID: ENSDARG00000037383

Description: paired box 5

Associated with

  • Anatomical structure development
    (GO:0048856)
  • Dna-binding transcription factor activity, rna polymerase ii-specific
    (GO:0000981)
  • Dna binding
    (GO:0003677)
  • Nucleus
    (GO:0005634)
  • Regulation of dna-templated transcription
    (GO:0006355)
  • Regulation of transcription by rna polymerase ii
    (GO:0006357)
  • Rna polymerase ii cis-regulatory region sequence-specific dna binding
    (GO:0000978)
  • Vestibular receptor cell development
    (GO:0060118)
  • Vestibular reflex
    (GO:0060005)

Other Information

Genular Protein ID: 54038897

Symbol: A0A8M2BI63_DANRE

Name: N/A

UniProtKB Accession Codes:

A0A8M2BI63

Database IDs:

ARBA 6 CDD 1 CTD 1 GO 4 Gene3D 1 InterPro 6 NCBI Taxonomy 1 PANTHER 2 PRINTS 1 PROSITE 3 Pfam 2 Proteomes 2 RefSeq 2 SAM 1 SMART 1 SUPFAM 1 ZFIN 2

Citations:

PubMed ID: 23594743

Title: The zebrafish reference genome sequence and its relationship to the human genome.

PubMed ID: 23594743

DOI: 10.1038/nature12111

Sequence Information:

  • Length: 423
  • Mass: 45120
  • Checksum: A25A47091DB51E96
  • Sequence:
    • MDLDQKGPSL RIGRSGHGGV NQLGGVFVNG RPLPDVVRQR IVELAHQGVR PCDISRQLRV 
SHGCVSKILG RYYETGSIRP GVIGGSKPKV ATPKVVDKIA DYKRQNPTMF AWEIRDRLLA 
ERVCDNDSVP SVSSINRIIR TKVQQPPGQS GAVSAHNLAS TVAVTQVSAV TSDAAGSSYS 
ISGILGISSP ADASKRKRDD PLQDSPLANG HSHSGRDFLR KQMRGELFTP QQLEVLDHVF 
DRQPFPDIYP IPDSISYKPS QTTDYSAMAS LAGGLEEMKN SLANQTGAEL GSTVAGPQSY 
PLVSGRDLAS TTLPGYPPHV PPTGQGSYST PSLTGMVPGG DFSGSPYSHP QYSTYNESWR 
FANPSLLVFQ QEYGSLLGSE RAASSGLFPG QTPQPTGSPY YYSAATRGAG TAATATASAY 
DRH

Genular Protein ID: 1707748717

Symbol: A0A8M2BI96_DANRE

Name: N/A

UniProtKB Accession Codes:

A0A8M2BI96

Database IDs:

ARBA 6 CDD 1 CTD 1 GO 4 Gene3D 1 InterPro 6 NCBI Taxonomy 1 PANTHER 2 PRINTS 1 PROSITE 3 Pfam 2 Proteomes 2 RefSeq 2 SAM 1 SMART 1 SUPFAM 1 ZFIN 2

Citations:

PubMed ID: 23594743

Title: The zebrafish reference genome sequence and its relationship to the human genome.

PubMed ID: 23594743

DOI: 10.1038/nature12111

Sequence Information:

  • Length: 422
  • Mass: 45214
  • Checksum: 37866D487B306CE5
  • Sequence:
    • MEIHCKHDPF AAMHRHGGVN QLGGVFVNGR PLPDVVRQRI VELAHQGVRP CDISRQLRVS 
HGCVSKILGR YYETGSIRPG VIGGSKPKVA TPKVVDKIAD YKRQNPTMFA WEIRDRLLAE 
RVCDNDSVPS VSSINRIIRT KVQQPPGQSG AVSAHNLAST VAVTQVSAVT SDAAGSSYSI 
SGILGISSPA DASKRKRDDP LQDSPLANGH SHSGRDFLRK QMRGELFTPQ QLEVLDHVFD 
RQPFPDIYPI PDSISYKPSQ TTDYSAMASL AGGLEEMKNS LANQTGAELG STVAGPQSYP 
LVSGRDLAST TLPGYPPHVP PTGQGSYSTP SLTGMVPGGD FSGSPYSHPQ YSTYNESWRF 
ANPSLLVFQQ EYGSLLGSER AASSGLFPGQ TPQPTGSPYY YSAATRGAGT AATATASAYD 
RH

Genular Protein ID: 3057292111

Symbol: F1QGF8_DANRE

Name: N/A

UniProtKB Accession Codes:

F1QGF8 A0A8M1PBT6

Database IDs:

ARBA 6 Bgee 1 CDD 1 CTD 1 EMBL 1 Ensembl 3 GO 7 Gene3D 1 InterPro 6 KEGG 1 NCBI Taxonomy 1 OMA 1 OrthoDB 1 PANTHER 2 PRINTS 1 PROSITE 3 PaxDb 1 Pfam 2 Proteomes 2 Reactome 1 RefSeq 2 SAM 1 SMART 1 STRING 1 SUPFAM 1 ZFIN 2 eggNOG 1

Citations:

PubMed ID: 1811936

Title: Expression of the zebrafish paired box gene pax[zf-b] during early neurogenesis.

PubMed ID: 1811936

PubMed ID: 9671579

Title: A series of no isthmus (noi) alleles of the zebrafish pax2.1 gene reveals multiple signaling events in development of the midbrain-hindbrain boundary.

PubMed ID: 9671579

PubMed ID: 11641225

Title: The zebrafish buttonhead-like factor Bts1 is an early regulator of pax2.1 expression during mid-hindbrain development.

PubMed ID: 11641225

PubMed ID: 12917294

Title: Engrailed and Fgf8 act synergistically to maintain the boundary between diencephalon and mesencephalon.

PubMed ID: 12917294

PubMed ID: 15378083

Title: The 'definitive' (and 'primitive') guide to zebrafish hematopoiesis.

PubMed ID: 15378083

PubMed ID: 23594743

Title: The zebrafish reference genome sequence and its relationship to the human genome.

PubMed ID: 23594743

DOI: 10.1038/nature12111

PubMed ID: 29355523

Title: sox2 and sox3 Play unique roles in development of hair cells and neurons in the zebrafish inner ear.

PubMed ID: 29355523

PubMed ID: 29911973

Title: TALE factors use two distinct functional modes to control an essential zebrafish gene expression program.

PubMed ID: 29911973

PubMed ID: 30045885

Title: Loss of runx1 function results in B cell immunodeficiency but not T cell in adult zebrafish.

PubMed ID: 30045885

DOI: 10.1098/rsob.180043

PubMed ID: 30111845

Title: Simultaneous B and T cell acute lymphoblastic leukemias in zebrafish driven by transgenic MYC: implications for oncogenesis and lymphopoiesis.

PubMed ID: 30111845

PubMed ID: 31022185

Title: Anteroposterior patterning of the zebrafish ear through Fgf- and Hh-dependent regulation of hmx3a expression.

PubMed ID: 31022185

Sequence Information:

  • Length: 396
  • Mass: 41964
  • Checksum: E4A1BAD3439A6595
  • Sequence:
    • MDLDQKGPSL RIGRSGHGGV NQLGGVFVNG RPLPDVVRQR IVELAHQGVR PCDISRQLRV 
SHGCVSKILG RYYETGSIRP GVIGGSKPKV ATPKVVDKIA DYKRQNPTMF AWEIRDRLLA 
ERVCDNDSVP SVSSINRIIR TKVQQPPGQS GAVSAHNLAS TVAVTQVSAV TSDAAGSSYS 
ISGILGISSP ADASKRKRDD PLQDSPLANG HSHSGRDFLR KQMRGELFTP QQLETTDYSA 
MASLAGGLEE MKNSLANQTG AELGSTVAGP QSYPLVSGRD LASTTLPGYP PHVPPTGQGS 
YSTPSLTGMV PGGDFSGSPY SHPQYSTYNE SWRFANPSLL VFQQEYGSLL GSERAASSGL 
FPGQTPQPTG SPYYYSAATR GAGTAATATA SAYDRH

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.