Details for: six5

Gene ID: 65235

Symbol: six5

Ensembl ID: ENSDARG00000068406

Description: SIX homeobox 5

Associated with

  • Dna-binding transcription factor activity, rna polymerase ii-specific
    (GO:0000981)
  • Dna binding
    (GO:0003677)
  • Nucleus
    (GO:0005634)
  • Regulation of dna-templated transcription
    (GO:0006355)
  • Regulation of transcription by rna polymerase ii
    (GO:0006357)
  • Rna polymerase ii cis-regulatory region sequence-specific dna binding
    (GO:0000978)
  • Transcription regulator complex
    (GO:0005667)

Other Information

Genular Protein ID: 3273122655

Symbol: Q9DEC0_DANRE

Name: N/A

UniProtKB Accession Codes:

Q9DEC0

Database IDs:

ARBA 3 CDD 1 CTD 1 EMBL 2 GO 5 Gene3D 1 InterPro 4 KEGG 1 NCBI Taxonomy 1 OrthoDB 1 PANTHER 2 PROSITE 3 PROSITE-ProRule 1 PeptideAtlas 1 Pfam 2 Proteomes 3 RefSeq 2 RuleBase 1 SAM 1 SMART 1 SUPFAM 1 ZFIN 2

Citations:

PubMed ID: 11044620

Title: Expression of three zebrafish Six4 genes in the cranial sensory placodes and the developing somites.

PubMed ID: 11044620

DOI: 10.1016/S0925-4773(00)00451-2

PubMed ID: 23594743

Title: The zebrafish reference genome sequence and its relationship to the human genome.

PubMed ID: 23594743

DOI: 10.1038/nature12111

PubMed ID: 26469318

Title: RFX transcription factors are essential for hearing in mice.

PubMed ID: 26469318

PubMed ID: 26180064

Title: Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish.

PubMed ID: 26180064

PubMed ID: 27189481

Title: Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

PubMed ID: 27189481

PubMed ID: 28347272

Title: Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach.

PubMed ID: 28347272

Sequence Information:

  • Length: 797
  • Mass: 83635
  • Checksum: 94DBD582AC7ABA16
  • Sequence:
    • MASLSLESTE QTENGPKESA QNEAKVKEET DPDEVSEQLL QSFQNSALSF STDQVACLCE 
ALLQAGNVDR LWRFLATIPP SADLLRGNET LLKAQALVAF HRDEFKELYA ILDSHDFHPS 
NHGFLQDLYL KARYKEAERS RGRSLGAVDK YRLRKKFPLP KTIWDGEETV YCFKEKSRNA 
LKECYKINRY PTPAEKKNLA KVTGLSLTQV SNWFKNRRQR DRTPSGTNSK SESDGNHSTE 
DEASKGDLED ITDKPAAQET GSSNASLISV PGAPCGTGQL VLNSPGGFLT SPHPLLLNGS 
PILSGAGTGV IINGLTLSDG HTVTLSPVTA NAPLLLNGAQ VISKDERGIS DLEAQGSLTT 
VVLNPQASLT STIPLSLSED TKSTSSNVSP LDFISLPEAL KNTDNTHPVP ANSISLPTIS 
TSVISSTSLS SGILAPNSIS ASIPGSVSSV ISSPVVPLQP TQPPEIVVLG KAEPLSSTCS 
SFSSPQVLSL PQVVPSIQGV PVSQLMQPPS GTTVSSRPQL VPVSPVNPQL SQVSIPQFPT 
QTFHMGPRLA QAQPQNGSVT LNTSSALTLP QIADGQVTQV LTPQLGNESN LASLPQIQTS 
LGTQVIPISS PTQVVPISQT KDSSQMVPLS LPQLMPVSSI TGTTGTFSFP QVVPATPSLS 
IPSHGGAFQI LTSGAGTGLS VAQGPIRLSP IGPPQSVPTG TIPGVQLLNS GVIKLPTASP 
GNILLAGGIG SSPILSVQNG KLILTIPAGI QFASMPVKSV PDNSVSSNSN LDSQISTVHS 
LENQPAPPLI ARNSQTL

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.