Upf3b | ENSMUSG00000036572 | NCBI 68134

Details for: Upf3b

Gene ID: 68134

Symbol: Upf3b

Ensembl ID: ENSMUSG00000036572

Description: UPF3 regulator of nonsense transcripts homolog B (yeast)

Associated with

Gene expression (transcription)
(R-MMU-74160)
Metabolism of rna
(R-MMU-8953854)
Mrna 3'-end processing
(R-MMU-72187)
Mrna splicing
(R-MMU-72172)
Mrna splicing - major pathway
(R-MMU-72163)
Nonsense-mediated decay (nmd)
(R-MMU-927802)
Nonsense mediated decay (nmd) enhanced by the exon junction complex (ejc)
(R-MMU-975957)
Processing of capped intron-containing pre-mrna
(R-MMU-72203)
Rna polymerase ii transcription
(R-MMU-73857)
Rna polymerase ii transcription termination
(R-MMU-73856)
Transport of mature mrna derived from an intron-containing transcript
(R-MMU-159236)
Transport of mature transcript to cytoplasm
(R-MMU-72202)
Brain development
(GO:0007420)
Centriolar satellite
(GO:0034451)
Cytoplasm
(GO:0005737)
Cytosol
(GO:0005829)
Exon-exon junction complex
(GO:0035145)
Mrna binding
(GO:0003729)
Neuronal cell body
(GO:0043025)
Neuron projection development
(GO:0031175)
Nuclear-transcribed mrna catabolic process, nonsense-mediated decay
(GO:0000184)
Nucleolus
(GO:0005730)
Nucleoplasm
(GO:0005654)
Nucleus
(GO:0005634)
Positive regulation of mrna cis splicing, via spliceosome
(GO:1905746)
Positive regulation of neuron differentiation
(GO:0045666)
Positive regulation of translation
(GO:0045727)

Other Information

Proteins

Q3ULL6_MOUSE
Q80UI8_MOUSE

Genular Protein ID: 1138583715

Symbol: Q3ULL6_MOUSE

Name: N/A

UniProtKB Accession Codes:

Q3ULL6

Database IDs:

Citations:

PubMed ID: 10349636

Title: High-efficiency full-length cDNA cloning.

PubMed ID: 10349636

DOI: 10.1016/S0076-6879(99)03004-9

PubMed ID: 11042159

Title: Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.

PubMed ID: 11042159

DOI: 10.1101/gr.145100

PubMed ID: 11076861

Title: RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.

PubMed ID: 11076861

DOI: 10.1101/gr.152600

PubMed ID: 11217851

Title: Functional annotation of a full-length mouse cDNA collection.

PubMed ID: 11217851

DOI: 10.1038/35055500

PubMed ID: 12466851

Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.

PubMed ID: 12466851

DOI: 10.1038/nature01266

PubMed ID: 16141073

Title: Antisense Transcription in the Mammalian Transcriptome.

PubMed ID: 16141073

DOI: 10.1126/science.1112009

PubMed ID: 19468303

Title: Lineage-specific biology revealed by a finished genome assembly of the mouse.

PubMed ID: 19468303

DOI: 10.1371/journal.pbio.1000112

Sequence Information:

Length: 472
Mass: 57065
Checksum: 352BB365348FB7DE
Sequence:

MKEEKDHRPK EKRVTLFTPQ GATGGCIGAT AEGAKGDDRQ DRNRDKKEAL SKVVIRRLPP 
TLTKEQLQEH LQPMPEHDYF EFFSNDTSLY PHMYARAYIN FKNQEDILLF RDRFDGYVFL 
DNKGQEYHAI VEFAPFQKAA KKKIKKRDTK VGTIEDDPEY RKFLESYATD NEKMTSTPET 
LLEEIEAKNR ELIAKRTTPL LSFLKNKQRM REEKREERRR REIERKRQRE EERRKWKEEE 
KRKRKDIEKL KKIERIPERE KIRDEPKIKL LRKPEKGDEK ELDKRDKTKR LDKENLNEER 
ASGHSYTLPR RSDVELKDEK PKRLDDEGVR DYRDRDRDYE RDQERMIRER ERLKRQEEER 
RRQQQKERYE KEKAFKRKEE EMKREKEALR DKGKKSENTE SICSLEKIEK KEEVVKRDRI 
RNKDRPAMQL YQPGARSRSR LCPADDSIKP GDSPVDKKQE SGISHRKEGG EE

Genular Protein ID: 2060916081

Symbol: Q80UI8_MOUSE

Name: N/A

UniProtKB Accession Codes:

Q80UI8

Database IDs:

Citations:

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

Sequence Information:

Length: 388
Mass: 47419
Checksum: 3E2B520BBF51DBBD
Sequence:

NDTSLYPHMY ARAYINFKNQ EDILLFRDRF DGYVFLDNKG QEYHAIVEFA PFQKAAKKKI 
KKRDTKVGTI EDDPEYRKFL ESYATDNEKM TSTPETLLEE IEAKNRELIA KRTTPLLSFL 
KNKQRMREEK REERRRREIE RKRQREEERR KWKEEEKRKR KDIEKLKKIE RIPEREKIRD 
EPKIKLLRKP EKGDEKELDK RDKTKRLDKE NLNEERASGH SYTLPRRSDV ELKDEKPKRL 
DDEGVRDYRD RDRDYERDQE RMIRERERLK RQEEERRRQQ QKERYEKEKA FKRKEEEMKR 
EKEALRDKGK KSENTESICS LEKIEKKEEV VKRDRIRNKD RPAMQLYQPG ARSRSRLCPA 
DDSIKPGDSP VDKKQESGIS HRKEGGEE

The gene details are incomplete or unavailable at the moment.

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. You can zoom in with the mouse wheel for a closer view, and the text will adjust automatically if necessary. For the full schema, download it here.

Details for: Upf3b

Associated with

Other Information

High-efficiency full-length cDNA cloning. PubMed ID: 10349636

Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. PubMed ID: 11042159

RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. PubMed ID: 11076861

Functional annotation of a full-length mouse cDNA collection. PubMed ID: 11217851

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. PubMed ID: 12466851

Antisense Transcription in the Mammalian Transcriptome. PubMed ID: 16141073

Lineage-specific biology revealed by a finished genome assembly of the mouse. PubMed ID: 19468303

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). PubMed ID: 15489334