Details for: CAPN1

Gene ID: 823

Symbol: CAPN1

Ensembl ID: ENSG00000014216

Description: calpain 1

Associated with

Cells (max top 100)

(Marker Score score is uniquely calculated using our advanced thresholding algorithms to reveal cell-specific gene markers)

  • Cell Name: epithelial cell of esophagus (CL0002252)
    Fold Change: 2.49
    Marker Score: 21474
  • Cell Name: conjunctival epithelial cell (CL1000432)
    Fold Change: 2.23
    Marker Score: 2348
  • Cell Name: stratified epithelial cell (CL0000079)
    Fold Change: 2.2
    Marker Score: 17144
  • Cell Name: basal cell of epithelium of trachea (CL1000348)
    Fold Change: 2.18
    Marker Score: 16244
  • Cell Name: placental villous trophoblast (CL2000060)
    Fold Change: 2.11
    Marker Score: 8299
  • Cell Name: squamous epithelial cell (CL0000076)
    Fold Change: 2.09
    Marker Score: 1425
  • Cell Name: bladder urothelial cell (CL1001428)
    Fold Change: 2.04
    Marker Score: 3009
  • Cell Name: epithelial cell of urethra (CL1000296)
    Fold Change: 1.99
    Marker Score: 1564
  • Cell Name: basal cell (CL0000646)
    Fold Change: 1.95
    Marker Score: 2511
  • Cell Name: nasal mucosa goblet cell (CL0002480)
    Fold Change: 1.82
    Marker Score: 1218
  • Cell Name: megakaryocyte-erythroid progenitor cell (CL0000050)
    Fold Change: 1.81
    Marker Score: 756
  • Cell Name: corneal epithelial cell (CL0000575)
    Fold Change: 1.8
    Marker Score: 1986.5
  • Cell Name: enterocyte (CL0000584)
    Fold Change: 1.72
    Marker Score: 8275
  • Cell Name: early pro-B cell (CL0002046)
    Fold Change: 1.71
    Marker Score: 17285
  • Cell Name: colon epithelial cell (CL0011108)
    Fold Change: 1.66
    Marker Score: 5209.5
  • Cell Name: OFF retinal ganglion cell (CL4023033)
    Fold Change: 1.61
    Marker Score: 675
  • Cell Name: respiratory goblet cell (CL0002370)
    Fold Change: 1.56
    Marker Score: 450
  • Cell Name: pancreatic ductal cell (CL0002079)
    Fold Change: 1.56
    Marker Score: 1617
  • Cell Name: cell in vitro (CL0001034)
    Fold Change: 1.55
    Marker Score: 53685.5
  • Cell Name: myeloid leukocyte (CL0000766)
    Fold Change: 1.52
    Marker Score: 1830
  • Cell Name: luminal epithelial cell of mammary gland (CL0002326)
    Fold Change: 1.5
    Marker Score: 2665
  • Cell Name: basal cell of prostate epithelium (CL0002341)
    Fold Change: 1.48
    Marker Score: 3611
  • Cell Name: bronchial goblet cell (CL1000312)
    Fold Change: 1.46
    Marker Score: 719
  • Cell Name: keratinocyte (CL0000312)
    Fold Change: 1.45
    Marker Score: 1212
  • Cell Name: kidney collecting duct principal cell (CL1001431)
    Fold Change: 1.45
    Marker Score: 3658
  • Cell Name: acinar cell of salivary gland (CL0002623)
    Fold Change: 1.44
    Marker Score: 3287
  • Cell Name: basal epithelial cell of tracheobronchial tree (CL0002329)
    Fold Change: 1.43
    Marker Score: 1625
  • Cell Name: epithelial cell of stratum germinativum of esophagus (CL1000447)
    Fold Change: 1.43
    Marker Score: 344
  • Cell Name: glandular cell of esophagus (CL0002657)
    Fold Change: 1.38
    Marker Score: 436
  • Cell Name: decidual natural killer cell, human (CL0002343)
    Fold Change: 1.35
    Marker Score: 3737
  • Cell Name: peripheral nervous system neuron (CL2000032)
    Fold Change: 1.35
    Marker Score: 1513
  • Cell Name: intestinal crypt stem cell (CL0002250)
    Fold Change: 1.34
    Marker Score: 503
  • Cell Name: duct epithelial cell (CL0000068)
    Fold Change: 1.34
    Marker Score: 624
  • Cell Name: ON retinal ganglion cell (CL4023032)
    Fold Change: 1.33
    Marker Score: 364
  • Cell Name: fraction A pre-pro B cell (CL0002045)
    Fold Change: 1.32
    Marker Score: 1334
  • Cell Name: secretory cell (CL0000151)
    Fold Change: 1.31
    Marker Score: 2394
  • Cell Name: epithelial cell (CL0000066)
    Fold Change: 1.31
    Marker Score: 2084
  • Cell Name: blood cell (CL0000081)
    Fold Change: 1.28
    Marker Score: 14894
  • Cell Name: mammary gland epithelial cell (CL0002327)
    Fold Change: 1.28
    Marker Score: 455
  • Cell Name: cortical thymic epithelial cell (CL0002364)
    Fold Change: 1.28
    Marker Score: 4733
  • Cell Name: ciliated columnar cell of tracheobronchial tree (CL0002145)
    Fold Change: 1.28
    Marker Score: 11086
  • Cell Name: kidney collecting duct cell (CL1001225)
    Fold Change: 1.27
    Marker Score: 249
  • Cell Name: papillary tips cell (CL1000597)
    Fold Change: 1.27
    Marker Score: 256
  • Cell Name: ciliated cell (CL0000064)
    Fold Change: 1.27
    Marker Score: 4358
  • Cell Name: erythroid progenitor cell, mammalian (CL0001066)
    Fold Change: 1.26
    Marker Score: 405
  • Cell Name: stem cell (CL0000034)
    Fold Change: 1.25
    Marker Score: 2972
  • Cell Name: Hofbauer cell (CL3000001)
    Fold Change: 1.25
    Marker Score: 689
  • Cell Name: pro-T cell (CL0000827)
    Fold Change: 1.25
    Marker Score: 5117
  • Cell Name: medullary thymic epithelial cell (CL0002365)
    Fold Change: 1.25
    Marker Score: 2047.5
  • Cell Name: taste receptor cell (CL0000209)
    Fold Change: 1.24
    Marker Score: 1070
  • Cell Name: club cell (CL0000158)
    Fold Change: 1.24
    Marker Score: 1445
  • Cell Name: common dendritic progenitor (CL0001029)
    Fold Change: 1.24
    Marker Score: 427
  • Cell Name: hematopoietic stem cell (CL0000037)
    Fold Change: 1.23
    Marker Score: 649
  • Cell Name: ovarian surface epithelial cell (CL2000064)
    Fold Change: 1.22
    Marker Score: 3323
  • Cell Name: eukaryotic cell (CL0000255)
    Fold Change: 1.22
    Marker Score: 628
  • Cell Name: CD14-positive, CD16-negative classical monocyte (CL0002057)
    Fold Change: 1.22
    Marker Score: 68168
  • Cell Name: small pre-B-II cell (CL0000954)
    Fold Change: 1.21
    Marker Score: 1459.5
  • Cell Name: foveolar cell of stomach (CL0002179)
    Fold Change: 1.21
    Marker Score: 7746
  • Cell Name: decidual cell (CL2000002)
    Fold Change: 1.21
    Marker Score: 5217
  • Cell Name: epithelial cell of lung (CL0000082)
    Fold Change: 1.21
    Marker Score: 6358
  • Cell Name: lung ciliated cell (CL1000271)
    Fold Change: 1.2
    Marker Score: 571
  • Cell Name: large pre-B-II cell (CL0000957)
    Fold Change: 1.2
    Marker Score: 3256
  • Cell Name: kidney loop of Henle thin ascending limb epithelial cell (CL1001107)
    Fold Change: 1.17
    Marker Score: 1186
  • Cell Name: platelet (CL0000233)
    Fold Change: 1.17
    Marker Score: 529
  • Cell Name: mucous neck cell (CL0000651)
    Fold Change: 1.17
    Marker Score: 2648
  • Cell Name: progenitor cell of mammary luminal epithelium (CL0009116)
    Fold Change: 1.17
    Marker Score: 4494
  • Cell Name: kidney epithelial cell (CL0002518)
    Fold Change: 1.16
    Marker Score: 1228
  • Cell Name: enterocyte of colon (CL1000347)
    Fold Change: 1.16
    Marker Score: 1785
  • Cell Name: respiratory epithelial cell (CL0002368)
    Fold Change: 1.15
    Marker Score: 632
  • Cell Name: multi-ciliated epithelial cell (CL0005012)
    Fold Change: 1.15
    Marker Score: 2180
  • Cell Name: pneumocyte (CL0000322)
    Fold Change: 1.14
    Marker Score: 1839
  • Cell Name: kidney loop of Henle thin descending limb epithelial cell (CL1001111)
    Fold Change: 1.14
    Marker Score: 1231
  • Cell Name: CD34-positive, CD38-negative hematopoietic stem cell (CL0001024)
    Fold Change: 1.14
    Marker Score: 824
  • Cell Name: type I pneumocyte (CL0002062)
    Fold Change: 1.13
    Marker Score: 1361
  • Cell Name: kidney collecting duct intercalated cell (CL1001432)
    Fold Change: 1.13
    Marker Score: 1871
  • Cell Name: microfold cell of epithelium of small intestine (CL1000353)
    Fold Change: 1.12
    Marker Score: 267
  • Cell Name: hematopoietic precursor cell (CL0008001)
    Fold Change: 1.12
    Marker Score: 391
  • Cell Name: Unknown (CL0000548)
    Fold Change: 1.11
    Marker Score: 811
  • Cell Name: CD4-positive, alpha-beta memory T cell, CD45RO-positive (CL0001204)
    Fold Change: 1.11
    Marker Score: 7113
  • Cell Name: tonsil germinal center B cell (CL2000006)
    Fold Change: 1.11
    Marker Score: 3300
  • Cell Name: enterocyte of epithelium of large intestine (CL0002071)
    Fold Change: 1.11
    Marker Score: 1105
  • Cell Name: Bergmann glial cell (CL0000644)
    Fold Change: 1.09
    Marker Score: 446
  • Cell Name: oocyte (CL0000023)
    Fold Change: 1.09
    Marker Score: 270
  • Cell Name: nephron tubule epithelial cell (CL1000494)
    Fold Change: 1.09
    Marker Score: 256
  • Cell Name: primary sensory neuron (sensu Teleostei) (CL0000531)
    Fold Change: 1.09
    Marker Score: 366
  • Cell Name: primitive red blood cell (CL0002355)
    Fold Change: 1.07
    Marker Score: 802
  • Cell Name: proerythroblast (CL0000547)
    Fold Change: 1.06
    Marker Score: 718
  • Cell Name: lung secretory cell (CL1000272)
    Fold Change: 1.06
    Marker Score: 942
  • Cell Name: kidney cell (CL1000497)
    Fold Change: 1.05
    Marker Score: 704
  • Cell Name: adventitial cell (CL0002503)
    Fold Change: 1.05
    Marker Score: 260
  • Cell Name: ependymal cell (CL0000065)
    Fold Change: 1.04
    Marker Score: 364
  • Cell Name: hematopoietic multipotent progenitor cell (CL0000837)
    Fold Change: 1.04
    Marker Score: 508
  • Cell Name: intestine goblet cell (CL0019031)
    Fold Change: 1.04
    Marker Score: 995
  • Cell Name: adipocyte of epicardial fat of left ventricle (CL1000311)
    Fold Change: 1.02
    Marker Score: 268
  • Cell Name: mucus secreting cell (CL0000319)
    Fold Change: 1.02
    Marker Score: 259
  • Cell Name: elicited macrophage (CL0000861)
    Fold Change: 1.01
    Marker Score: 6143
  • Cell Name: endothelial cell of hepatic sinusoid (CL1000398)
    Fold Change: 1.01
    Marker Score: 221
  • Cell Name: kidney loop of Henle thick ascending limb epithelial cell (CL1001106)
    Fold Change: 1
    Marker Score: 2693
  • Cell Name: cerebral cortex GABAergic interneuron (CL0010011)
    Fold Change: 0.99
    Marker Score: 71570
  • Cell Name: forebrain radial glial cell (CL0013000)
    Fold Change: 0.99
    Marker Score: 47794

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Other Information

**Key characteristics:** * The CAPN1 gene is located on chromosome 17q23.1. * It is a member of the CAPN family of endopeptidases. * It is expressed in high levels in epithelial cells, including those in the skin, mouth, and eyes. * It is also expressed in neurons and other cell types. **Pathways and functions:** * The CAPN1 gene is involved in a number of cellular processes, including cell migration, differentiation, and apoptosis. * In cell migration, CAPN1 is responsible for the disassembly of cell adhesion complexes and the activation of the cell migration machinery. * In differentiation, CAPN1 is involved in the regulation of epithelial cell differentiation. * In apoptosis, CAPN1 is a key regulator of cell death. It is involved in the activation of the cdk5 pathway, which is a major pathway of apoptosis. **Clinical significance:** * Mutations in the CAPN1 gene have been linked to a number of human diseases, including Alzheimer's disease. * In Alzheimer's disease, CAPN1 mutations are thought to contribute to the development of amyloid plaques and neurofibrillary tangles, which are two hallmark features of the disease. * Targeting CAPN1 has been investigated as a potential therapeutic strategy for Alzheimer's disease. **Additional information:** * The CAPN1 gene is also involved in a number of other cellular processes, including cell growth, proliferation, and differentiation. * It is a highly conserved gene, with a similar gene found in mammals, birds, and reptiles.

Genular Protein ID: 3003816363

Symbol: CAN1_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 3017764

Title: Complete amino acid sequence of the large subunit of the low-Ca2+-requiring form of human Ca2+-activated neutral protease (muCANP) deduced from its cDNA sequence.

PubMed ID: 3017764

DOI: 10.1016/0014-5793(86)80919-x

PubMed ID: 2400579

Title: A novel member of the calcium-dependent cysteine protease family.

PubMed ID: 2400579

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 8954105

Title: Modulation of the calpain autoproteolysis by calpastatin and phospholipids.

PubMed ID: 8954105

DOI: 10.1006/bbrc.1996.1779

PubMed ID: 8769305

Title: Autolysis of human erythrocyte calpain produces two active enzyme forms with different cell localization.

PubMed ID: 8769305

DOI: 10.1016/0014-5793(96)00775-2

PubMed ID: 9271093

Title: Calcium-binding properties of human erythrocyte calpain.

PubMed ID: 9271093

DOI: 10.1042/bj3250721

PubMed ID: 19413330

Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.

PubMed ID: 19413330

DOI: 10.1021/ac9004309

PubMed ID: 19617626

Title: Calpain-1 cleaves and activates caspase-7.

PubMed ID: 19617626

DOI: 10.1074/jbc.m109.038174

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 21531719

Title: Deimination of human filaggrin-2 promotes its proteolysis by calpain 1.

PubMed ID: 21531719

DOI: 10.1074/jbc.m110.197400

PubMed ID: 22223895

Title: Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.

PubMed ID: 22223895

DOI: 10.1074/mcp.m111.015131

PubMed ID: 22814378

Title: N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB.

PubMed ID: 22814378

DOI: 10.1073/pnas.1210303109

PubMed ID: 23707407

Title: PLEIAD/SIMC1/C5orf25, a novel autolysis regulator for a skeletal-muscle-specific calpain, CAPN3, scaffolds a CAPN3 substrate, CTBP1.

PubMed ID: 23707407

DOI: 10.1016/j.jmb.2013.05.009

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 27153400

Title: Mutations in CAPN1 cause autosomal-recessive hereditary spastic paraplegia.

PubMed ID: 27153400

DOI: 10.1016/j.ajhg.2016.04.002

PubMed ID: 16411745

Title: Molecular mode of action of a covalently inhibiting peptidomimetic on the human calpain protease core.

PubMed ID: 16411745

DOI: 10.1021/bi052077b

Sequence Information:

  • Length: 714
  • Mass: 81890
  • Checksum: 1CB6D7C56D063498
  • Sequence:
  • MSEEIITPVY CTGVSAQVQK QRARELGLGR HENAIKYLGQ DYEQLRVRCL QSGTLFRDEA 
    FPPVPQSLGY KDLGPNSSKT YGIKWKRPTE LLSNPQFIVD GATRTDICQG ALGDCWLLAA 
    IASLTLNDTL LHRVVPHGQS FQNGYAGIFH FQLWQFGEWV DVVVDDLLPI KDGKLVFVHS 
    AEGNEFWSAL LEKAYAKVNG SYEALSGGST SEGFEDFTGG VTEWYELRKA PSDLYQIILK 
    ALERGSLLGC SIDISSVLDM EAITFKKLVK GHAYSVTGAK QVNYRGQVVS LIRMRNPWGE 
    VEWTGAWSDS SSEWNNVDPY ERDQLRVKME DGEFWMSFRD FMREFTRLEI CNLTPDALKS 
    RTIRKWNTTL YEGTWRRGST AGGCRNYPAT FWVNPQFKIR LDETDDPDDY GDRESGCSFV 
    LALMQKHRRR ERRFGRDMET IGFAVYEVPP ELVGQPAVHL KRDFFLANAS RARSEQFINL 
    REVSTRFRLP PGEYVVVPST FEPNKEGDFV LRFFSEKSAG TVELDDQIQA NLPDEQVLSE 
    EEIDENFKAL FRQLAGEDME ISVKELRTIL NRIISKHKDL RTKGFSLESC RSMVNLMDRD 
    GNGKLGLVEF NILWNRIRNY LSIFRKFDLD KSGSMSAYEM RMAIESAGFK LNKKLYELII 
    TRYSEPDLAV DFDNFVCCLV RLETMFRFFK TLDTDLDGVV TFDLFKWLQL TMFA

Genular Protein ID: 3087462350

Symbol: B4DWH5_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Sequence Information:

  • Length: 660
  • Mass: 75835
  • Checksum: D7BE7773AC75929D
  • Sequence:
  • MRMPSSTWAR IMSSCGCDAC RVGPSSVMRP SPRYPRAWVT RTWVPIPPRP MASSGSVPRN 
    CWLLAAIASL TLNDTLLHRV VPHGQSFQNG YAGIFHFQLW QFGEWVDVVV DDLLPIKDGK 
    LVFVHSAEGN EFWSALLEKA YAKVNGSYEA LSGGSTSEGF EDFTGGVTEW YELRKAPSDL 
    YQIILKALER GSLLGCSIDI SSVLDMEAIT FKKLVKGHAY SVTGAKQVNY RGQVVSLIRM 
    RNPWGEVEWT GAWSDSSSEW NNVDPYERDQ LRVKMEDGEF WMSFRDFMRE FTRLEICNLT 
    PDALKSRTIR KWNTTLYEGT WRRGSTAGGC RNYPATFWVN PQFKIRLDET DDPDDYGDRE 
    SGCSFVLALM QKHRRRERRF GRDMETIGFA VYEVPPELVG QPAVHLKRDF FLANASRARS 
    EQFINLREVS TRFRLPPGEY VVVPSTFEPN KEGDFVLRFF SEKSAGTVEL DDQIQANLPD 
    EQVLSEEEID ENFKALFRQL AGEDMEISVK ELRTILNRII SKHKDLRTKG FSLESCRSMV 
    NLMDRDGNGK LGLVEFNILW NRIRNYLSIF RKFDLDKSGS MSAYEMRMAI ESAGFKLNKK 
    LYELIITRYS EPDLAVDFDN FVCCLVRLET MFRFFKTLDT DLDGVVTFDL FKWLQLTMFA

Genular Protein ID: 1092034388

Symbol: B2RDI5_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Sequence Information:

  • Length: 714
  • Mass: 81897
  • Checksum: C583A49958C137CE
  • Sequence:
  • MSEEIITPVY CTGVSAQVQK QRARELGLGR HENAIKYLGQ DYEQLRVRCL QSGTLFRDEA 
    FPPVPQSLGY KDLGPNSSKT YGIKWKRPTE LLSNPQFIVD GATRTDICQG ALGDCWLLAA 
    IASLTLNDTL LHRVVPHGQS FQNGYAGIFH FQLWQFGEWV DVVVDDLLPI KDGKLVFVHS 
    AEGNEFWSAL LEKAYAKVNG SYEALSGGST SEGFEDFTGG VTEWYELRKA PSDLYQIILK 
    ALERGSLLGC SIDISSVLDM EAITFKKLVK GHAYSVTGAK QVNYRGQVVS LIRMRNPWGE 
    VEWTGAWSDS SSEWNNVDPY ERDQLRVKME DGEFWMSFRD FMREFTRLEI CNLTPDALKS 
    RTIRKWNTTL YEGTWRRGST AGGCRNYPAT FWVNPQFKIR LDETDDPDDY GDRESGCSFV 
    LALMQKHRRR ERRFGCDMET IGFTVYEVPP ELVGQPAVHL KRDFFLANAS RARSEQFINL 
    REVSTRFRLP PGEYVVVPST FEPNKEGDFV LRFFSEKSAG TVELDDQIQA NLPDEQVLSE 
    EEIDENFKAL FRQLAGEDME ISVKELRTIL NRIISKHKDL RTKGFSLESC RSMVNLMDRD 
    GNGKLGLVEF NILWNRIWNY LSIFRKFDLD KSGSMSAYEM RMAIESAGFK LNKKLYELII 
    TRYSEPDLAV DFDNFVCCLV RLETMFRFFK TLDTDLDGVV TFDLFKWLQL TMFA

Database document:

This is a preview of the gene's schema. Only a few entries are kept for 'singleCellExpressions,' 'mRNAExpressions,' and other large data arrays for visualization purposes. For the full schema, download it here.