Details for: LIMD1
Gene ID: 8994
Gene Type: Protein-coding - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.
Symbol: LIMD1
Ensembl ID: ENSG00000144791
Description: LIM domain containing 1
Selected Context(s): Overall
Cell Significance Landscape
Associated with
Significant Cells
Cell Significance Index (CSI) scores for the chosen context(s)
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CSI 11rCSI 9.56%PRS 79.78
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CSI 7.52rCSI 9.09%PRS 78.12
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CSI 6.08rCSI 10.01%PRS 74.44
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CSI 5.27rCSI 8.05%PRS 73.61
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CSI 4.99rCSI 3.84%PRS 70.79
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CSI 4.67rCSI 5.39%PRS 61.78
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CSI 4.6rCSI 10.96%PRS 69.45
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CSI 4.27rCSI 6.8%PRS 61
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CSI 4.09rCSI 3.51%PRS 76.94
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CSI 3.9rCSI 9.08%PRS 78.59
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CSI 3.62rCSI 10.18%PRS 65.33
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CSI 3.46rCSI 13.55%PRS 46.2
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CSI 3.42rCSI 6.65%PRS 72.42
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CSI 3.34rCSI 5.32%PRS 61.8
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CSI 3.34rCSI 7.49%PRS 51.06
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CSI 3.32rCSI 6.59%PRS 65.74
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CSI 2.96rCSI 5.37%PRS 82.8
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CSI 2.95rCSI 5.35%PRS 60.37
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CSI 2.8rCSI 10.9%PRS 87.35
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CSI 2.79rCSI 6.56%PRS 71.86
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CSI 2.75rCSI 11.09%PRS 68.36
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CSI 2.74rCSI 4.9%PRS 68.48
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CSI 2.71rCSI 4.44%PRS 58.22
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CSI 2.67rCSI 1.98%PRS 62.01
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CSI 2.66rCSI 2.11%PRS 56.38
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CSI 2.63rCSI 2.3%PRS 78.03
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CSI 2.61rCSI 2.47%PRS 68.45
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CSI 2.58rCSI 5.9%PRS 60.61
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CSI 2.57rCSI 2.68%PRS 69.25
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CSI 2.5rCSI 3.21%PRS 73.56
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CSI 2.46rCSI 2.04%PRS 69.09
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CSI 2.41rCSI 5.31%PRS 73.24
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CSI 2.39rCSI 1.85%PRS 72.21
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CSI 2.35rCSI 1.64%PRS 72.16
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CSI 2.32rCSI 5.31%PRS 69.69
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CSI 2.29rCSI 2.64%PRS 60.05
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CSI 2.27rCSI 1.88%PRS 71.63
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CSI 2.23rCSI 2.78%PRS 79.64
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CSI 2.21rCSI 2.13%PRS 60.81
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CSI 2.2rCSI 1.73%PRS 75.74
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CSI 2.19rCSI 2.4%PRS 72.53
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CSI 2.15rCSI 2%PRS 69.94
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CSI 2.14rCSI 2.24%PRS 72.74
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CSI 2.12rCSI 7.92%PRS 61.16
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CSI 2.1rCSI 2.1%PRS 62.65
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CSI 2.06rCSI 6.1%PRS 78.87
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CSI 2.02rCSI 3.09%PRS 69.8
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CSI 1.98rCSI 4.09%PRS 68.8
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CSI 1.93rCSI 4.78%PRS 67.92
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CSI 1.89rCSI 3.93%PRS 66.14
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CSI 1.86rCSI 2.22%PRS 83.74
-
CSI 1.84rCSI 2.42%PRS 81.92
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CSI 1.84rCSI 2.28%PRS 48.4
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CSI 1.82rCSI 3.18%PRS 61.55
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CSI 1.81rCSI 4.72%PRS 69.41
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CSI 1.81rCSI 3.12%PRS 59.55
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CSI 1.78rCSI 2.76%PRS 75.53
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CSI 1.76rCSI 6.83%PRS 71.63
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CSI 1.74rCSI 5.14%PRS 67.98
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CSI 1.73rCSI 4.56%PRS 77.6
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CSI 1.69rCSI 2.42%PRS 58.62
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CSI 1.63rCSI 2.02%PRS 66.09
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CSI 1.63rCSI 1.95%PRS 50.12
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CSI 1.59rCSI 2.26%PRS 65.31
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CSI 1.56rCSI 2.26%PRS 84.17
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CSI 1.55rCSI 1.94%PRS 79.37
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CSI 1.46rCSI 2.45%PRS 50.33
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CSI 1.42rCSI 2.81%PRS 82.56
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CSI 1.41rCSI 3.44%PRS 62.16
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CSI 1.38rCSI 3.6%PRS 70.62
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CSI 1.37rCSI 3.79%PRS 64.11
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CSI 1.33rCSI 4.27%PRS 66.66
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CSI 1.29rCSI 1.95%PRS 74.18
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CSI 1.25rCSI 7.48%PRS 74.22
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CSI 1.23rCSI 5.9%PRS 69.04
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CSI 1.21rCSI 6.99%PRS 66.93
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CSI 1.18rCSI 1.81%PRS 78.44
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CSI 1.14rCSI 2.15%PRS 79.07
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CSI 1.03rCSI 2.76%PRS 60.08
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CSI 1.02rCSI 2.74%PRS 75.41
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CSI 0.99rCSI 1.75%PRS 49.46
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CSI 0.86rCSI 2.19%PRS 58.75
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CSI 0.85rCSI 1.32%PRS 67.88
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CSI 0.78rCSI 1.91%PRS 48.74
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CSI 0.68rCSI 2.59%PRS 59.56
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CSI 0.64rCSI 3.2%PRS 65.33
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CSI 0.64rCSI 3.98%PRS 60.64
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CSI 0.56rCSI 4.58%PRS 62.65
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration
Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.
Legend:
- Query Gene
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Node Color (Target Cell CSI, relative to current network):
- Very High
- High
- Medium
- Low
- Very Low
- CSI N/A
- Node Size: Proportional to Target Cell CSI magnitude
- STRING PPI Edge
- Shared Pathway Edge (ONTOLOGY)
Other Information
This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.
Genular Protein ID: 1007243786
Symbol: LIMD1_HUMAN
Name: LIM domain-containing protein 1
UniProtKB Accession Codes:
Database IDs:
Citations:
PubMed ID: 10647888
Title: A novel gene containing LIM domains (LIMD1) is located within the common eliminated region 1 (C3CER1) in 3p21.3.
PubMed ID: 10647888
PubMed ID: 11352561
Title: The LZTFL1 gene is a part of a transcriptional map covering 250 kb within the common eliminated region 1 (C3CER1) in 3p21.3.
PubMed ID: 11352561
PubMed ID: 15489334
Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
PubMed ID: 15489334
DOI: 10.1101/gr.2596504
PubMed ID: 15144186
Title: Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry.
PubMed ID: 15144186
DOI: 10.1021/ac035352d
PubMed ID: 15542589
Title: LIM domains-containing protein 1 (LIMD1), a tumor suppressor encoded at chromosome 3p21.3, binds pRB and represses E2F-driven transcription.
PubMed ID: 15542589
PubMed ID: 15870274
Title: The LIM protein Ajuba influences interleukin-1-induced NF-kappaB activation by affecting the assembly and activity of the protein kinase Czeta/p62/TRAF6 signaling complex.
PubMed ID: 15870274
PubMed ID: 18439753
Title: Cell cycle regulated phosphorylation of LIMD1 in cell lines and expression in human breast cancers.
PubMed ID: 18439753
PubMed ID: 18331720
Title: Ajuba LIM proteins are snail/slug corepressors required for neural crest development in Xenopus.
PubMed ID: 18331720
PubMed ID: 18712738
Title: Differential subcellular localisation of the tumour suppressor protein LIMD1 in breast cancer correlates with patient survival.
PubMed ID: 18712738
DOI: 10.1002/ijc.23851
PubMed ID: 18669648
Title: A quantitative atlas of mitotic phosphorylation.
PubMed ID: 18669648
PubMed ID: 19413330
Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.
PubMed ID: 19413330
DOI: 10.1021/ac9004309
PubMed ID: 19690332
Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.
PubMed ID: 19690332
PubMed ID: 20303269
Title: Ajuba LIM proteins are negative regulators of the Hippo signaling pathway.
PubMed ID: 20303269
PubMed ID: 20616046
Title: LIM-domain proteins, LIMD1, Ajuba, and WTIP are required for microRNA-mediated gene silencing.
PubMed ID: 20616046
PubMed ID: 20068231
Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.
PubMed ID: 20068231
PubMed ID: 21834987
Title: Identification and characterization of a set of conserved and new regulators of cytoskeletal organisation, cell morphology and migration.
PubMed ID: 21834987
PubMed ID: 21269460
Title: Initial characterization of the human central proteome.
PubMed ID: 21269460
PubMed ID: 21406692
Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.
PubMed ID: 21406692
PubMed ID: 22286099
Title: The LIMD1 protein bridges an association between the prolyl hydroxylases and VHL to repress HIF-1 activity.
PubMed ID: 22286099
DOI: 10.1038/ncb2424
PubMed ID: 23186163
Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.
PubMed ID: 23186163
DOI: 10.1021/pr300630k
PubMed ID: 24275569
Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.
PubMed ID: 24275569
Sequence Information:
- Length: 676
- Mass: 72190
- Checksum: 085DF06F047B49E6
- Sequence:
MDKYDDLGLE ASKFIEDLNM YEASKDGLFR VDKGAGNNPE FEETRRVFAT KMAKIHLQQQ QQQLLQEETL PRGSRGPVNG GGRLGPQARW EVVGSKLTVD GAAKPPLAAS TGAPGAVTTL AAGQPPYPPQ EQRSRPYLHG TRHGSQDCGS RESLATSEMS AFHQPGPCED PSCLTHGDYY DNLSLASPKW GDKPGVSPSI GLSVGSGWPS SPGSDPPLPK PCGDHPLNHR QLSLSSSRSS EGSLGGQNSG IGGRSSEKPT GLWSTASSQR VSPGLPSPNL ENGAPAVGPV QPRTPSVSAP LALSCPRQGG LPRSNSGLGG EVSGVMSKPN VDPQPWFQDG PKSYLSSSAP SSSPAGLDGS QQGAVPGLGP KPGCTDLGTG PKLSPTSLVH PVMSTLPELS CKEGPLGWSS DGSLGSVLLD SPSSPRVRLP CQPLVPGPEL RPSAAELKLE ALTQRLEREM DAHPKADYFG ACVKCSKGVF GAGQACQAMG NLYHDTCFTC AACSRKLRGK AFYFVNGKVF CEEDFLYSGF QQSADRCFLC GHLIMDMILQ ALGKSYHPGC FRCVICNECL DGVPFTVDSE NKIYCVRDYH KVLAPKCAAC GLPILPPEGS DETIRVVSMD RDYHVECYHC EDCGLELNDE DGHRCYPLED HLFCHSCHVK RLEKRPSSTA LHQHHF