Details for: USP10

Gene ID: 9100

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: USP10

Ensembl ID: ENSG00000103194

Description: ubiquitin specific peptidase 10

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • erythroblast CL0000765
    CSI 14.58
    rCSI 38.7%
    PRS 42.87
  • transit amplifying cell of colon CL0009011
    CSI 11.68
    rCSI 13.72%
    PRS 33.63
  • placental villous trophoblast CL2000060
    CSI 9.81
    rCSI 15.16%
    PRS 28.21
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 8.43
    rCSI 14.88%
    PRS 18.08
  • type B pancreatic cell CL0000169
    CSI 7.75
    rCSI 17.15%
    PRS 27.65
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 7.64
    rCSI 6.9%
    PRS 27.38
  • Schwann cell CL0002573
    CSI 7.17
    rCSI 20.37%
    PRS 31.77
  • GABAergic neuron CL0000617
    CSI 6.62
    rCSI 22.19%
    PRS 22.12
  • retinal cone cell CL0000573
    CSI 6.4
    rCSI 10.3%
    PRS 23.14
  • cardiac neuron CL0010022
    CSI 6.26
    rCSI 20.04%
    PRS 26.59
  • hepatic stellate cell CL0000632
    CSI 6.23
    rCSI 23.34%
    PRS 25.31
  • lung neuroendocrine cell CL1000223
    CSI 6.04
    rCSI 8.94%
    PRS 33.85
  • pulmonary alveolar type 1 cell CL0002062
    CSI 5.96
    rCSI 34.37%
    PRS 34.64
  • luminal cell of prostate epithelium CL0002340
    CSI 5.44
    rCSI 29.25%
    PRS 46.63
  • ionocyte CL0005006
    CSI 5.41
    rCSI 5.8%
    PRS 27.8
  • myeloid dendritic cell CL0000782
    CSI 5.15
    rCSI 7.46%
    PRS 43.85
  • L4 intratelencephalic projecting glutamatergic neuron CL4030063
    CSI 4.9
    rCSI 11.73%
    PRS 21.9
  • myeloid leukocyte CL0000766
    CSI 4.71
    rCSI 4.35%
    PRS 31.04
  • CD4-positive helper T cell CL0000492
    CSI 4.62
    rCSI 3.5%
    PRS 40.25
  • myelocyte CL0002193
    CSI 4.54
    rCSI 29.79%
    PRS 67.77
  • choroid plexus epithelial cell CL0000706
    CSI 4.53
    rCSI 7.41%
    PRS 23.35
  • Kupffer cell CL0000091
    CSI 4.48
    rCSI 10.24%
    PRS 29.43
  • podocyte CL0000653
    CSI 4.48
    rCSI 19.89%
    PRS 28.83
  • hematopoietic multipotent progenitor cell CL0000837
    CSI 4.4
    rCSI 10.59%
    PRS 45.22
  • sncg GABAergic cortical interneuron CL4023015
    CSI 4.3
    rCSI 6.91%
    PRS 20.29
  • lung pericyte CL0009089
    CSI 4.3
    rCSI 11.34%
    PRS 35.41
  • CD14-positive, CD16-positive monocyte CL0002397
    CSI 4.26
    rCSI 5.58%
    PRS 41.31
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 4.04
    rCSI 14.55%
    PRS 17.71
  • paneth cell CL0000510
    CSI 3.98
    rCSI 5.88%
    PRS 44.87
  • unswitched memory B cell CL0000970
    CSI 3.85
    rCSI 3.24%
    PRS 45.13
  • blood vessel smooth muscle cell CL0019018
    CSI 3.82
    rCSI 31.06%
    PRS 27.7
  • CD4-positive, alpha-beta thymocyte CL0000810
    CSI 3.8
    rCSI 3.05%
    PRS 49.7
  • effector CD4-positive, alpha-beta T cell CL0001044
    CSI 3.69
    rCSI 10.58%
    PRS 44
  • respiratory hillock cell CL4030023
    CSI 3.51
    rCSI 6.27%
    PRS 45.45
  • alpha-beta T cell CL0000789
    CSI 3.51
    rCSI 4.12%
    PRS 41.7
  • squamous epithelial cell CL0000076
    CSI 3.45
    rCSI 8.18%
    PRS 35.71
  • kidney connecting tubule epithelial cell CL1000768
    CSI 3.38
    rCSI 8.58%
    PRS 23.19
  • L6b glutamatergic cortical neuron CL4023038
    CSI 3.38
    rCSI 10.55%
    PRS 19.51
  • effector CD8-positive, alpha-beta T cell CL0001050
    CSI 3.35
    rCSI 2.54%
    PRS 38.98
  • cerebellar granule cell CL0001031
    CSI 3.34
    rCSI 4.92%
    PRS 27.74
  • IgG plasma cell CL0000985
    CSI 3.26
    rCSI 3.91%
    PRS 47.99
  • small pre-B-II cell CL0000954
    CSI 3.25
    rCSI 3.13%
    PRS 54.01
  • mesodermal cell CL0000222
    CSI 3.23
    rCSI 3.88%
    PRS 28.86
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 3.14
    rCSI 7.63%
    PRS 18.15
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 2.93
    rCSI 9.15%
    PRS 21.22
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 2.89
    rCSI 17%
    PRS 19.63
  • fibroblast of cardiac tissue CL0002548
    CSI 2.7
    rCSI 12.93%
    PRS 27.19
  • pulmonary ionocyte CL0017000
    CSI 2.7
    rCSI 3.28%
    PRS 36.49
  • neuroblast (sensu Vertebrata) CL0000031
    CSI 2.69
    rCSI 3.46%
    PRS 28.52
  • pro-B cell CL0000826
    CSI 2.65
    rCSI 2.19%
    PRS 30.4
  • pancreatic A cell CL0000171
    CSI 2.64
    rCSI 2.77%
    PRS 31.64
  • effector memory CD8-positive, alpha-beta T cell CL0000913
    CSI 2.58
    rCSI 2.35%
    PRS 43.56
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 2.57
    rCSI 4.31%
    PRS 18.64
  • pancreatic D cell CL0000173
    CSI 2.55
    rCSI 2.51%
    PRS 31.98
  • direct pathway medium spiny neuron CL4023026
    CSI 2.55
    rCSI 60.96%
    PRS 17.81
  • inhibitory interneuron CL0000498
    CSI 2.53
    rCSI 5.85%
    PRS 24.54
  • hematopoietic stem cell CL0000037
    CSI 2.53
    rCSI 1.68%
    PRS 34.36
  • S cone cell CL0003050
    CSI 2.53
    rCSI 11.11%
    PRS 28.1
  • myoepithelial cell CL0000185
    CSI 2.5
    rCSI 6.32%
    PRS 36.49
  • forebrain radial glial cell CL0013000
    CSI 2.47
    rCSI 7.93%
    PRS 39.05
  • CD4-positive, alpha-beta memory T cell CL0000897
    CSI 2.46
    rCSI 1.76%
    PRS 40.25
  • renal alpha-intercalated cell CL0005011
    CSI 2.45
    rCSI 3.28%
    PRS 37.01
  • luminal epithelial cell of mammary gland CL0002326
    CSI 2.44
    rCSI 4.44%
    PRS 44.14
  • indirect pathway medium spiny neuron CL4023029
    CSI 2.43
    rCSI 58.62%
    PRS 18.57
  • blood vessel endothelial cell CL0000071
    CSI 2.42
    rCSI 5.02%
    PRS 29.3
  • double negative thymocyte CL0002489
    CSI 2.39
    rCSI 1.66%
    PRS 36.05
  • central memory CD4-positive, alpha-beta T cell CL0000904
    CSI 2.37
    rCSI 1.4%
    PRS 41.48
  • mucus secreting cell CL0000319
    CSI 2.37
    rCSI 3.76%
    PRS 38.23
  • naive T cell CL0000898
    CSI 2.35
    rCSI 1.63%
    PRS 40.94
  • pancreatic ductal cell CL0002079
    CSI 2.32
    rCSI 4.52%
    PRS 30.95
  • intestine goblet cell CL0019031
    CSI 2.31
    rCSI 2.05%
    PRS 29.81
  • neutrophil CL0000775
    CSI 2.31
    rCSI 12.92%
    PRS 45.39
  • glioblast CL0000030
    CSI 2.3
    rCSI 3.68%
    PRS 25.51
  • melanocyte CL0000148
    CSI 2.26
    rCSI 1.67%
    PRS 25.71
  • keratinocyte CL0000312
    CSI 2.21
    rCSI 1.85%
    PRS 34.73
  • basal cell of prostate epithelium CL0002341
    CSI 2.19
    rCSI 6.33%
    PRS 52.34
  • class switched memory B cell CL0000972
    CSI 2.16
    rCSI 1.61%
    PRS 47.06
  • neural crest cell CL0011012
    CSI 2.15
    rCSI 1.7%
    PRS 20.85
  • interstitial cell of Cajal CL0002088
    CSI 2.12
    rCSI 2.7%
    PRS 34.23
  • enteric smooth muscle cell CL0002504
    CSI 2.1
    rCSI 3%
    PRS 32.6
  • erythroid progenitor cell CL0000038
    CSI 2.09
    rCSI 12%
    PRS 40.97
  • basal cell CL0000646
    CSI 2.08
    rCSI 2.77%
    PRS 31.96
  • glutamatergic neuron CL0000679
    CSI 2.06
    rCSI 4.24%
    PRS 27.97
  • cerebral cortex GABAergic interneuron CL0010011
    CSI 2.04
    rCSI 6.01%
    PRS 34.61
  • alveolar type 1 fibroblast cell CL4028004
    CSI 2.03
    rCSI 2.22%
    PRS 33.16
  • CD4-positive, CD25-positive, alpha-beta regulatory T cell CL0000792
    CSI 2.02
    rCSI 1.99%
    PRS 43.91
  • endothelial cell of pericentral hepatic sinusoid CL0019022
    CSI 2
    rCSI 6.17%
    PRS 41.79
  • epithelial cell of lower respiratory tract CL0002632
    CSI 1.97
    rCSI 1.53%
    PRS 29.37
  • macroglial cell CL0000126
    CSI 1.95
    rCSI 5.02%
    PRS 35.37
  • conjunctival epithelial cell CL1000432
    CSI 1.94
    rCSI 2.97%
    PRS 30.22
  • activated CD4-positive, alpha-beta T cell CL0000896
    CSI 1.94
    rCSI 1.79%
    PRS 49.51
  • endothelial cell of placenta CL0009092
    CSI 1.92
    rCSI 9.48%
    PRS 39.44
  • medium spiny neuron CL1001474
    CSI 1.92
    rCSI 16.55%
    PRS 19.12
  • interneuron CL0000099
    CSI 1.92
    rCSI 3.85%
    PRS 22.46
  • adipocyte CL0000136
    CSI 1.91
    rCSI 2.45%
    PRS 28.35
  • secretory cell CL0000151
    CSI 1.9
    rCSI 1.98%
    PRS 30.59
  • vascular associated smooth muscle cell CL0000359
    CSI 1.89
    rCSI 6.15%
    PRS 34.29
  • ciliated cell CL0000064
    CSI 1.89
    rCSI 3.07%
    PRS 29.62
  • enteroendocrine cell of small intestine CL0009006
    CSI 1.85
    rCSI 4.08%
    PRS 43.37
  • CD14-low, CD16-positive monocyte CL0002396
    CSI 1.84
    rCSI 1.42%
    PRS 28.31
  • mesenchymal stem cell CL0000134
    CSI 0.1
    rCSI 1.0%
    PRS 47.7%
  • ON midget ganglion cell CL4033046
    CSI 0.2
    rCSI 4.0%
    PRS 25.1%
  • parietal epithelial cell CL1000452
    CSI 0.2
    rCSI 0.5%
    PRS 25.2%
  • OFF midget ganglion cell CL4033047
    CSI 0.2
    rCSI 4.2%
    PRS 26.5%
  • GABAergic interneuron CL0011005
    CSI 0.3
    rCSI 4.6%
    PRS 31.3%
  • regular ventricular cardiac myocyte CL0002131
    CSI 0.3
    rCSI 2.0%
    PRS 24.3%
  • CD14-positive, CD16-negative classical monocyte CL0002057
    CSI 0.3
    rCSI 1.9%
    PRS 56.5%
  • lymphoid lineage restricted progenitor cell CL0000838
    CSI 0.5
    rCSI 1.9%
    PRS 47.5%
  • large pre-B-II cell CL0000957
    CSI 0.5
    rCSI 1.4%
    PRS 45.3%
  • megakaryocyte CL0000556
    CSI 0.5
    rCSI 2.2%
    PRS 46.4%
  • deuterosomal cell CL4033044
    CSI 0.5
    rCSI 1.8%
    PRS 42.3%
  • pluripotent stem cell CL0002248
    CSI 0.5
    rCSI 16.2%
    PRS 55.6%
  • dopaminergic neuron CL0000700
    CSI 0.6
    rCSI 3.2%
    PRS 19.5%
  • myeloid lineage restricted progenitor cell CL0000839
    CSI 0.6
    rCSI 2.9%
    PRS 52.9%
  • transit amplifying cell of small intestine CL0009012
    CSI 0.6
    rCSI 2.5%
    PRS 49.8%
  • central nervous system neuron CL2000029
    CSI 0.6
    rCSI 4.2%
    PRS 20.3%
  • intestinal crypt stem cell of colon CL0009043
    CSI 0.7
    rCSI 5.0%
    PRS 49.9%
  • innate lymphoid cell CL0001065
    CSI 0.7
    rCSI 1.4%
    PRS 39.9%
  • intestinal crypt stem cell of small intestine CL0009017
    CSI 0.7
    rCSI 1.9%
    PRS 38.1%
  • enterocyte of epithelium of large intestine CL0002071
    CSI 0.7
    rCSI 3.6%
    PRS 46.1%
  • respiratory goblet cell CL0002370
    CSI 0.7
    rCSI 7.5%
    PRS 51.2%
  • paneth cell of epithelium of small intestine CL1000343
    CSI 0.7
    rCSI 2.0%
    PRS 44.2%
  • promyelocyte CL0000836
    CSI 0.7
    rCSI 1.0%
    PRS 39.5%
  • retinal ganglion cell CL0000740
    CSI 0.7
    rCSI 1.6%
    PRS 21.6%
  • dendritic cell, human CL0001056
    CSI 0.7
    rCSI 1.1%
    PRS 35.4%
  • IgA plasma cell CL0000987
    CSI 0.8
    rCSI 0.8%
    PRS 48.7%
  • lung macrophage CL1001603
    CSI 0.8
    rCSI 1.9%
    PRS 34.9%
  • cerebral cortex endothelial cell CL1001602
    CSI 0.8
    rCSI 1.5%
    PRS 23.1%
  • eye photoreceptor cell CL0000287
    CSI 0.9
    rCSI 9.6%
    PRS 59.5%
  • peripheral nervous system neuron CL2000032
    CSI 0.9
    rCSI 1.2%
    PRS 25.9%
  • skeletal muscle satellite stem cell CL0008011
    CSI 0.9
    rCSI 3.9%
    PRS 58.8%
  • ciliated columnar cell of tracheobronchial tree CL0002145
    CSI 0.9
    rCSI 2.0%
    PRS 29.9%
  • small intestine goblet cell CL1000495
    CSI 0.9
    rCSI 1.9%
    PRS 38.9%
  • L2/3 intratelencephalic projecting glutamatergic neuron CL4030059
    CSI 0.9
    rCSI 2.0%
    PRS 22.9%
  • neuroendocrine cell CL0000165
    CSI 0.9
    rCSI 3.5%
    PRS 50.5%
  • glycinergic amacrine cell CL4030028
    CSI 0.9
    rCSI 2.4%
    PRS 30.0%
  • cardiac muscle cell CL0000746
    CSI 1.0
    rCSI 1.4%
    PRS 23.6%
  • neural progenitor cell CL0011020
    CSI 1.0
    rCSI 4.3%
    PRS 26.3%
  • CD1c-positive myeloid dendritic cell CL0002399
    CSI 1.0
    rCSI 1.2%
    PRS 35.7%
  • keratocyte CL0002363
    CSI 1.0
    rCSI 2.5%
    PRS 41.1%
  • corneal epithelial cell CL0000575
    CSI 1.0
    rCSI 2.9%
    PRS 47.7%
  • chondrocyte CL0000138
    CSI 1.0
    rCSI 1.7%
    PRS 25.3%
  • retina horizontal cell CL0000745
    CSI 1.0
    rCSI 1.6%
    PRS 27.6%
  • respiratory basal cell CL0002633
    CSI 1.1
    rCSI 1.1%
    PRS 34.9%
  • effector memory CD8-positive, alpha-beta T cell, terminally differentiated CL0001062
    CSI 1.1
    rCSI 5.4%
    PRS 38.8%
  • alveolar macrophage CL0000583
    CSI 1.1
    rCSI 1.8%
    PRS 34.7%
  • acinar cell CL0000622
    CSI 1.1
    rCSI 1.6%
    PRS 38.7%
  • tracheobronchial smooth muscle cell CL0019019
    CSI 1.1
    rCSI 1.9%
    PRS 37.5%
  • intermediate monocyte CL0002393
    CSI 1.1
    rCSI 1.7%
    PRS 30.8%
  • ciliated epithelial cell CL0000067
    CSI 1.1
    rCSI 1.0%
    PRS 22.1%
  • Hofbauer cell CL3000001
    CSI 1.1
    rCSI 2.1%
    PRS 37.7%
  • progenitor cell CL0011026
    CSI 1.1
    rCSI 2.4%
    PRS 38.9%
  • transit amplifying cell CL0009010
    CSI 1.1
    rCSI 1.7%
    PRS 45.6%
  • amacrine cell CL0000561
    CSI 1.1
    rCSI 3.3%
    PRS 23.8%
  • renal interstitial pericyte CL1001318
    CSI 1.1
    rCSI 3.1%
    PRS 28.0%
  • colonocyte CL1000347
    CSI 1.1
    rCSI 1.6%
    PRS 38.1%
  • CD8-positive, alpha-beta cytotoxic T cell CL0000794
    CSI 1.1
    rCSI 1.4%
    PRS 48.5%
  • alveolar adventitial fibroblast CL4028006
    CSI 1.2
    rCSI 1.8%
    PRS 30.4%
  • lung ciliated cell CL1000271
    CSI 1.2
    rCSI 1.3%
    PRS 22.4%
  • epithelial cell of proximal tubule CL0002306
    CSI 1.2
    rCSI 2.8%
    PRS 28.4%
  • regular atrial cardiac myocyte CL0002129
    CSI 1.2
    rCSI 3.8%
    PRS 30.7%
  • differentiation-committed oligodendrocyte precursor CL4023059
    CSI 1.2
    rCSI 2.2%
    PRS 25.8%
  • respiratory suprabasal cell CL4033048
    CSI 1.2
    rCSI 1.6%
    PRS 34.3%
  • duct epithelial cell CL0000068
    CSI 1.3
    rCSI 1.8%
    PRS 31.8%
  • periportal region hepatocyte CL0019026
    CSI 1.3
    rCSI 4.9%
    PRS 39.3%
  • lung secretory cell CL1000272
    CSI 1.3
    rCSI 3.1%
    PRS 28.1%
  • rod bipolar cell CL0000751
    CSI 1.3
    rCSI 2.3%
    PRS 25.0%
  • pancreatic acinar cell CL0002064
    CSI 1.3
    rCSI 1.8%
    PRS 32.9%
  • VIP GABAergic cortical interneuron CL4023016
    CSI 1.3
    rCSI 1.6%
    PRS 18.4%
  • glial cell CL0000125
    CSI 1.3
    rCSI 5.1%
    PRS 27.2%
  • stem cell CL0000034
    CSI 1.3
    rCSI 1.3%
    PRS 22.6%
  • hepatocyte CL0000182
    CSI 1.4
    rCSI 2.4%
    PRS 28.1%
  • promonocyte CL0000559
    CSI 1.4
    rCSI 2.4%
    PRS 38.8%
  • granulocyte monocyte progenitor cell CL0000557
    CSI 1.4
    rCSI 1.2%
    PRS 33.3%
  • neuroblast (sensu Nematoda and Protostomia) CL0000338
    CSI 1.4
    rCSI 1.6%
    PRS 26.0%
  • renal beta-intercalated cell CL0002201
    CSI 1.4
    rCSI 3.3%
    PRS 32.9%
  • granulocyte CL0000094
    CSI 1.4
    rCSI 2.1%
    PRS 37.8%
  • fallopian tube secretory epithelial cell CL4030006
    CSI 1.4
    rCSI 1.3%
    PRS 30.8%
  • retinal rod cell CL0000604
    CSI 1.4
    rCSI 2.5%
    PRS 29.1%
  • common dendritic progenitor CL0001029
    CSI 1.4
    rCSI 1.8%
    PRS 38.1%
  • radial glial cell CL0000681
    CSI 1.4
    rCSI 2.0%
    PRS 30.1%
  • group 3 innate lymphoid cell CL0001071
    CSI 1.4
    rCSI 1.1%
    PRS 32.0%
  • erythrocyte CL0000232
    CSI 1.4
    rCSI 3.3%
    PRS 36.8%
  • ependymal cell CL0000065
    CSI 1.5
    rCSI 3.0%
    PRS 17.1%
  • mononuclear phagocyte CL0000113
    CSI 1.5
    rCSI 3.2%
    PRS 33.5%
  • extravillous trophoblast CL0008036
    CSI 1.5
    rCSI 1.8%
    PRS 26.6%
  • intestinal epithelial cell CL0002563
    CSI 1.5
    rCSI 1.5%
    PRS 30.6%
  • intrahepatic cholangiocyte CL0002538
    CSI 1.5
    rCSI 3.5%
    PRS 47.6%
  • colon goblet cell CL0009039
    CSI 1.5
    rCSI 3.5%
    PRS 42.1%
  • bronchus fibroblast of lung CL2000093
    CSI 1.5
    rCSI 1.2%
    PRS 30.9%
  • multi-ciliated epithelial cell CL0005012
    CSI 1.5
    rCSI 1.5%
    PRS 25.6%
  • central memory CD8-positive, alpha-beta T cell CL0000907
    CSI 1.5
    rCSI 1.0%
    PRS 37.3%
  • astrocyte of the cerebral cortex CL0002605
    CSI 1.5
    rCSI 3.4%
    PRS 19.3%
  • kidney interstitial alternatively activated macrophage CL1000695
    CSI 1.5
    rCSI 4.0%
    PRS 28.7%
  • kidney loop of Henle thin descending limb epithelial cell CL1001111
    CSI 1.5
    rCSI 2.2%
    PRS 27.8%
  • epithelial cell of lung CL0000082
    CSI 1.5
    rCSI 1.3%
    PRS 28.5%
  • retinal bipolar neuron CL0000748
    CSI 1.5
    rCSI 2.9%
    PRS 22.3%
  • near-projecting glutamatergic cortical neuron CL4023012
    CSI 1.6
    rCSI 5.9%
    PRS 19.4%
  • cerebral cortex neuron CL0010012
    CSI 1.6
    rCSI 6.3%
    PRS 30.0%
  • microcirculation associated smooth muscle cell CL0008035
    CSI 1.6
    rCSI 4.6%
    PRS 32.9%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [USP10](/details-gene/9100) (Ubiquitin Specific Peptidase 10) is a protein-coding gene that encodes a cysteine-type deubiquitinating enzyme (DUB). This enzyme plays a crucial role in post-translational regulation by cleaving ubiquitin from target proteins, thereby influencing their stability, localization, and function. Functionally, [USP10](/details-gene/9100) is implicated in multiple fundamental cellular processes, including the [DNA damage response](/details-go/GO:0006974), [autophagy](/details-go/GO:0006914), and the regulation of protein stability, notably through its interaction with the tumor suppressor p53 ([GO:0002039](/details-go/GO:0002039)). Its expression is significant across a wide array of metabolically active and highly proliferative cell types. **Overall**, its highest significance is observed in [erythroblast](/details-cell/CL0000765), [transit amplifying cell of colon](/details-cell/CL0009011), and [placental villous trophoblast](/details-cell/CL2000060), suggesting a housekeeping role in maintaining protein homeostasis and genomic integrity in cells with high turnover rates. ## Cellular Roles and Expression Landscape The expression profile of [USP10](/details-gene/9100) suggests it is a broadly important enzyme rather than a specific lineage marker. Its significance is highest in functionally diverse cell types that share characteristics of high metabolic activity, rapid proliferation, or complex protein trafficking. The top-ranked cell types can be grouped into several functional categories: * **Hematopoietic Progenitors:** [USP10](/details-gene/9100) shows the highest significance in [erythroblast](/details-cell/CL0000765) (CSI: 14.58) and is also prominent in [megakaryocyte-erythroid progenitor cell](/details-cell/CL0000050). This points to a critical role in regulating the extensive protein synthesis and turnover required during red blood cell development. * **Proliferative Epithelial Cells:** High significance in [transit amplifying cell of colon](/details-cell/CL0009011) and [placental villous trophoblast](/details-cell/CL2000060) indicates a role in tissues with continuous cell division, likely related to its function in DNA damage repair and cell cycle control. * **Specialized Secretory and Neuronal Cells:** Significant expression in [type B pancreatic cell](/details-cell/CL0000169), various neuronal subtypes such as [caudal ganglionic eminence derived cortical interneuron](/details-cell/CL4023064) and [GABAergic neuron](/details-cell/CL0000617), and sensory cells like [retinal cone cell](/details-cell/CL0000573) suggests a role in maintaining protein homeostasis in cells with high secretory loads or complex proteomes. This is consistent with published work demonstrating its role in regulating the surface expression of transmembrane proteins like the cystic fibrosis transmembrane conductance regulator (CFTR) ([Link](https://doi.org/10.1074/jbc.m109.001685)). **Overall**, the broad but significant expression of [USP10](/details-gene/9100) across these varied cell types highlights its function as a key regulator of core cellular machinery involved in protein quality control and stress responses. ## Pathways and Molecular Function The functional annotations for [USP10](/details-gene/9100) confirm its role as a deubiquitinase with broad substrate specificity and impact. Its primary molecular function is [cysteine-type deubiquitinase activity](/details-go/GO:0004843), placing it within the larger family of [Ub-specific processing proteases](/details-reactome/R-HSA-5689880). This enzymatic activity is central to its involvement in numerous biological processes. Key functional pathways include: * **Protein Homeostasis and Degradation:** [USP10](/details-gene/9100) is a central player in [Protein deubiquitination](/details-go/GO:0016579) and the [Regulation of protein stability](/details-go/GO:0031647). This explains its importance in highly active cells by preventing the premature degradation of essential proteins. It also participates in the [Regulation of autophagy](/details-go/GO:0010506), a critical process for cellular recycling and stress adaptation. * **DNA Damage Response (DDR):** The gene is heavily implicated in the [Dna damage response](/details-go/GO:0006974) and is a component of the Reactome pathways for [Dna repair](/details-reactome/R-HSA-73894) and [Translesion synthesis](/details-reactome/R-HSA-110313). This is particularly relevant for its high expression in proliferative cells like [transit amplifying cell of colon](/details-cell/CL0009011), where maintaining genomic integrity is paramount. * **p53 Signaling:** A critical function of [USP10](/details-gene/9100) is its ability to directly bind ([GO:0002039](/details-go/GO:0002039)) and deubiquitinate the tumor suppressor p53, thereby stabilizing it and promoting its function in response to cellular stress. This places [USP10](/details-gene/9100) as a key regulator in the [Dna damage response, signal transduction by p53 class mediator](/details-go/GO:0030330) pathway. * **Regulation of Signaling Pathways:** [USP10](/details-gene/9100) also modulates other key pathways, including the [Negative regulation of canonical nf-kappab signal transduction](/details-go/GO:0043124) and the [Cellular response to interleukin-1](/details-go/GO:0071347), indicating a role in inflammatory signaling. Its interaction with Ras-GAP SH3 domain binding protein (G3BP) also suggests a role in stress granule dynamics ([Link](https://doi.org/10.1038/sj.onc.1204553)). ## Research Directions The widespread importance of [USP10](/details-gene/9100) in fundamental cellular processes makes it a compelling subject for further investigation, particularly in the context of disease. **Proposed Testable Hypotheses:** 1. Given its high significance in [erythroblast](/details-cell/CL0000765) and its role in protein stability, **[USP10](/details-gene/9100) is essential for normal erythropoiesis by stabilizing key transcription factors (e.g., GATA1) or enzymes required for heme synthesis.** Its loss of function could lead to ineffective erythropoiesis and contribute to certain forms of congenital anemia. 2. Based on its function in the [Dna damage response](/details-go/GO:0006974) and p53 stabilization, coupled with high expression in [transit amplifying cell of colon](/details-cell/CL0009011), **[USP10](/details-gene/9100) acts as a tumor suppressor in the colon.** Its downregulation or mutation in these progenitor cells may increase susceptibility to DNA damage, leading to accelerated tumor initiation and progression. **Suggested Experimental Approach:** To test the hypothesis that [USP10](/details-gene/9100) is a tumor suppressor in the colon (Hypothesis 2), a robust experimental model could be employed. One could generate a conditional knockout mouse model with *Usp10* flanked by LoxP sites (*Usp10*fl/fl) and cross it with a Villin-CreERT2 line to allow for tamoxifen-inducible, intestine-specific deletion of the gene in adult mice. Following gene deletion, these mice and their wild-type littermates would be subjected to a colitis-associated colorectal cancer model (e.g., AOM/DSS treatment). The prediction is that *Usp10*-deficient mice will exhibit a significantly higher tumor burden (number and size) compared to controls. Subsequent analysis of colonic crypts and tumors via immunohistochemistry for DNA damage markers (γH2AX), proliferation (Ki67), and apoptosis (cleaved caspase-3), alongside western blotting for p53 stability, would directly assess the mechanistic consequences of [USP10](/details-gene/9100) loss. **Therapeutic Potential:** As an enzyme, [USP10](/details-gene/9100) is a druggable target. Its role as a p53 stabilizer suggests that it could function as a tumor suppressor. Therefore, the development of **small-molecule activators** of [USP10](/details-gene/9100) could represent a novel therapeutic strategy for cancers that retain wild-type p53, potentially enhancing the cell's intrinsic tumor-suppressive capacity. Conversely, in specific cancer contexts where [USP10](/details-gene/9100) might stabilize oncoproteins, **inhibition** could be beneficial. The broad expression of [USP10](/details-gene/9100) poses a potential challenge for systemic therapies due to the risk of on-target, off-tumor toxicity. A more nuanced approach might involve targeting specific [USP10](/details-gene/9100)-substrate interactions or developing delivery systems that target tumors.

Genular Protein ID: 3205072775

Symbol: UBP10_HUMAN

Name: Deubiquitinating enzyme 10

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 11439350

Title: Ras-GAP SH3 domain binding protein (G3BP) is a modulator of USP10, a novel human ubiquitin specific protease.

PubMed ID: 11439350

DOI: 10.1038/sj.onc.1204553

PubMed ID: 8724849

Title: Prediction of the coding sequences of unidentified human genes. V. The coding sequences of 40 new genes (KIAA0161-KIAA0200) deduced by analysis of cDNA clones from human cell line KG-1.

PubMed ID: 8724849

DOI: 10.1093/dnares/3.1.17

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 17974005

Title: The full-ORF clone resource of the German cDNA consortium.

PubMed ID: 17974005

DOI: 10.1186/1471-2164-8-399

PubMed ID: 15616553

Title: The sequence and analysis of duplication-rich human chromosome 16.

PubMed ID: 15616553

DOI: 10.1038/nature03187

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 17081983

Title: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

PubMed ID: 17081983

DOI: 10.1016/j.cell.2006.09.026

PubMed ID: 16964243

Title: A probability-based approach for high-throughput protein phosphorylation analysis and site localization.

PubMed ID: 16964243

DOI: 10.1038/nbt1240

PubMed ID: 17487921

Title: Toward a global characterization of the phosphoproteome in prostate cancer cells: identification of phosphoproteins in the LNCaP cell line.

PubMed ID: 17487921

DOI: 10.1002/elps.200600782

PubMed ID: 17693683

Title: Quantitative phosphoproteome profiling of Wnt3a-mediated signaling network: indicating the involvement of ribonucleoside-diphosphate reductase M2 subunit phosphorylation at residue serine 20 in canonical Wnt signal transduction.

PubMed ID: 17693683

DOI: 10.1074/mcp.m700120-mcp200

PubMed ID: 18632802

Title: Vasopressin-inducible ubiquitin-specific protease 10 increases ENaC cell surface expression by deubiquitylating and stabilizing sorting nexin 3.

PubMed ID: 18632802

DOI: 10.1152/ajprenal.00001.2008

PubMed ID: 18669648

Title: A quantitative atlas of mitotic phosphorylation.

PubMed ID: 18669648

DOI: 10.1073/pnas.0805139105

PubMed ID: 18318008

Title: Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography.

PubMed ID: 18318008

DOI: 10.1002/pmic.200700884

PubMed ID: 19413330

Title: Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.

PubMed ID: 19413330

DOI: 10.1021/ac9004309

PubMed ID: 19398555

Title: The deubiquitinating enzyme USP10 regulates the post-endocytic sorting of cystic fibrosis transmembrane conductance regulator in airway epithelial cells.

PubMed ID: 19398555

DOI: 10.1074/jbc.m109.001685

PubMed ID: 19690332

Title: Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.

PubMed ID: 19690332

DOI: 10.1126/scisignal.2000007

PubMed ID: 20096447

Title: USP10 regulates p53 localization and stability by deubiquitinating p53.

PubMed ID: 20096447

DOI: 10.1016/j.cell.2009.12.032

PubMed ID: 20068231

Title: Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.

PubMed ID: 20068231

DOI: 10.1126/scisignal.2000475

PubMed ID: 21269460

Title: Initial characterization of the human central proteome.

PubMed ID: 21269460

DOI: 10.1186/1752-0509-5-17

PubMed ID: 21962518

Title: Beclin1 controls the levels of p53 by regulating the deubiquitination activity of USP10 and USP13.

PubMed ID: 21962518

DOI: 10.1016/j.cell.2011.08.037

PubMed ID: 21406692

Title: System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.

PubMed ID: 21406692

DOI: 10.1126/scisignal.2001570

PubMed ID: 23186163

Title: Toward a comprehensive characterization of a human cancer cell phosphoproteome.

PubMed ID: 23186163

DOI: 10.1021/pr300630k

PubMed ID: 23279204

Title: Both G3BP1 and G3BP2 contribute to stress granule formation.

PubMed ID: 23279204

DOI: 10.1111/gtc.12023

PubMed ID: 24845384

Title: Deubiquitination and stabilization of T-bet by USP10.

PubMed ID: 24845384

DOI: 10.1016/j.bbrc.2014.05.037

PubMed ID: 24275569

Title: An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

PubMed ID: 24275569

DOI: 10.1016/j.jprot.2013.11.014

PubMed ID: 25861989

Title: TRAF family member-associated NF-kappaB activator (TANK) inhibits genotoxic nuclear factor kappaB activation by facilitating deubiquitinase USP10-dependent deubiquitination of TRAF6 ligase.

PubMed ID: 25861989

DOI: 10.1074/jbc.m115.643767

PubMed ID: 27022092

Title: G3BP-Caprin1-USP10 complexes mediate stress granule condensation and associate with 40S subunits.

PubMed ID: 27022092

DOI: 10.1083/jcb.201508028

PubMed ID: 32302570

Title: Competing protein-RNA interaction networks control multiphase intracellular organization.

PubMed ID: 32302570

DOI: 10.1016/j.cell.2020.03.050

PubMed ID: 32011234

Title: Distinct regulatory ribosomal ubiquitylation events are reversible and hierarchically organized.

PubMed ID: 32011234

DOI: 10.7554/elife.54023

PubMed ID: 31981475

Title: The G3BP1-family-USP10 deubiquitinase complex rescues ubiquitinated 40S subunits of ribosomes stalled in translation from lysosomal degradation.

PubMed ID: 31981475

DOI: 10.1016/j.molcel.2019.12.024

PubMed ID: 34348161

Title: The E3 ubiquitin ligase RNF10 modifies 40S ribosomal subunits of ribosomes compromised in translation.

PubMed ID: 34348161

DOI: 10.1016/j.celrep.2021.109468

PubMed ID: 34469731

Title: iRQC, a surveillance pathway for 40S ribosomal quality control during mRNA translation initiation.

PubMed ID: 34469731

DOI: 10.1016/j.celrep.2021.109642

PubMed ID: 36183834

Title: Tryptophan mutations in G3BP1 tune the stability of a cellular signaling hub by weakening transient interactions with Caprin1 and USP10.

PubMed ID: 36183834

DOI: 10.1016/j.jbc.2022.102552

PubMed ID: 37582970

Title: MAVS-loaded unanchored Lys63-linked polyubiquitin chains activate the RIG-I-MAVS signaling cascade.

PubMed ID: 37582970

DOI: 10.1038/s41423-023-01065-2

PubMed ID: 36279435

Title: Yin and yang regulation of stress granules by Caprin-1.

PubMed ID: 36279435

DOI: 10.1073/pnas.2207975119

Sequence Information:

  • Length: 798
  • Mass: 87134
  • Checksum: E6BA77E2B5CE2B3F
  • Sequence:
  • MALHSPQYIF GDFSPDEFNQ FFVTPRSSVE LPPYSGTVLC GTQAVDKLPD GQEYQRIEFG 
    VDEVIEPSDT LPRTPSYSIS STLNPQAPEF ILGCTASKIT PDGITKEASY GSIDCQYPGS 
    ALALDGSSNV EAEVLENDGV SGGLGQRERK KKKKRPPGYY SYLKDGGDDS ISTEALVNGH 
    ANSAVPNSVS AEDAEFMGDM PPSVTPRTCN SPQNSTDSVS DIVPDSPFPG ALGSDTRTAG 
    QPEGGPGADF GQSCFPAEAG RDTLSRTAGA QPCVGTDTTE NLGVANGQIL ESSGEGTATN 
    GVELHTTESI DLDPTKPESA SPPADGTGSA SGTLPVSQPK SWASLFHDSK PSSSSPVAYV 
    ETKYSPPAIS PLVSEKQVEV KEGLVPVSED PVAIKIAELL ENVTLIHKPV SLQPRGLINK 
    GNWCYINATL QALVACPPMY HLMKFIPLYS KVQRPCTSTP MIDSFVRLMN EFTNMPVPPK 
    PRQALGDKIV RDIRPGAAFE PTYIYRLLTV NKSSLSEKGR QEDAEEYLGF ILNGLHEEML 
    NLKKLLSPSN EKLTISNGPK NHSVNEEEQE EQGEGSEDEW EQVGPRNKTS VTRQADFVQT 
    PITGIFGGHI RSVVYQQSSK ESATLQPFFT LQLDIQSDKI RTVQDALESL VARESVQGYT 
    TKTKQEVEIS RRVTLEKLPP VLVLHLKRFV YEKTGGCQKL IKNIEYPVDL EISKELLSPG 
    VKNKNFKCHR TYRLFAVVYH HGNSATGGHY TTDVFQIGLN GWLRIDDQTV KVINQYQVVK 
    PTAERTAYLL YYRRVDLL

Genular Protein ID: 2302780509

Symbol: A0A7G6J4N4_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Sequence Information:

  • Length: 802
  • Mass: 87533
  • Checksum: CBA33D0F268AEF5A
  • Sequence:
  • MPWLPSPGIG QYIFGDFSPD EFNQFFVTPR SSVELPPYSG TVLCGTQAVD KLPDGQEYQR 
    IEFGVDEVIE PSDTLPRTPS YSISSTLNPQ APEFILGCTA SKITPDGITK EASYGSIDCQ 
    YPGSALALDG SSNVEAEVLE NDGVSGGLGQ RERKKKKKRP PGYYSYLKDG GDDSISTEAL 
    VNGHANSAVP NSVSAEDAEF MGDMPPSVTP RTCNSPQNST DSVSDIVPDS PFPGALGSDT 
    RTAGQPEGGP GADFGQSCFP AEAGRDTLSR TAGAQPCVGT DTTENLGVAN GQILESSGEG 
    TATNGVELHT TESIDLDPTK PESASPPADG TGSASGTLPV SQPKSWASLF HDSKPSSSSP 
    VAYVETKYSP PAISPLVSEK QVEVKEGLVP VSEDPVAIKI AELLENVTLI HKPVSLQPRG 
    LINKGNWCYI NATLQALVAC PPMYHLMKFI PLYSKVQRPC TSTPMIDSFV RLMNEFTNMP 
    VPPKPRQALG DKIVRDIRPG AAFEPTYIYR LLTVNKSSLS EKGRQEDAEE YLGFILNGLH 
    EEMLNLKKLL SPSNEKLTIS NGPKNHSVNE EEQEEQGEGS EDEWEQVGPR NKTSVTRQAD 
    FVQTPITGIF GGHIRSVVYQ QSSKESATLQ PFFTLQLDIQ SDKIRTVQDA LESLVARESV 
    QGYTTKTKQE VEISRRVTLE KLPPVLVLHL KRFVYEKTGG CQKLIKNIEY PVDLEISKEL 
    LSPGVKNKNF KCHRTYRLFA VVYHHGNSAT GGHYTTDVFQ IGLNGWLRID DQTVKVINQY 
    QVVKPTAERT AYLLYYRRVD LL