Details for: CD47

Gene ID: 961

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: CD47

Ensembl ID: ENSG00000196776

Description: CD47 molecule

Selected Context(s):  Overall

Cell Significance Landscape

Contexts:

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • fallopian tube secretory epithelial cell CL4030006
    CSI 82.22
    rCSI 79.15%
    PRS 13.16
  • ciliated epithelial cell CL0000067
    CSI 53.78
    rCSI 47.29%
    PRS 9.22
  • lamp5 GABAergic cortical interneuron CL4023011
    CSI 41.23
    rCSI 69.2%
    PRS 7.47
  • L2/3-6 intratelencephalic projecting glutamatergic neuron CL4023040
    CSI 37.72
    rCSI 91.66%
    PRS 7.27
  • Hofbauer cell CL3000001
    CSI 32.62
    rCSI 61.58%
    PRS 15.76
  • CD14-low, CD16-positive monocyte CL0002396
    CSI 31.91
    rCSI 24.59%
    PRS 11.52
  • L6b glutamatergic cortical neuron CL4023038
    CSI 30.28
    rCSI 94.64%
    PRS 7.99
  • pvalb GABAergic cortical interneuron CL4023018
    CSI 29.32
    rCSI 36.47%
    PRS 6.95
  • pancreatic ductal cell CL0002079
    CSI 28.59
    rCSI 55.61%
    PRS 12.98
  • megakaryocyte-erythroid progenitor cell CL0000050
    CSI 26.95
    rCSI 24.34%
    PRS 11.24
  • retina horizontal cell CL0000745
    CSI 26.28
    rCSI 40.06%
    PRS 11.89
  • near-projecting glutamatergic cortical neuron CL4023012
    CSI 24.61
    rCSI 93.02%
    PRS 7.61
  • pancreatic acinar cell CL0002064
    CSI 24.23
    rCSI 32.21%
    PRS 13.89
  • chandelier pvalb GABAergic cortical interneuron CL4023036
    CSI 24.01
    rCSI 75.1%
    PRS 8.57
  • L5 extratelencephalic projecting glutamatergic cortical neuron CL4023041
    CSI 23.9
    rCSI 86%
    PRS 6.92
  • pancreatic A cell CL0000171
    CSI 22.52
    rCSI 23.59%
    PRS 13.59
  • CD4-positive helper T cell CL0000492
    CSI 18.59
    rCSI 14.06%
    PRS 17.57
  • sst GABAergic cortical interneuron CL4023017
    CSI 17.89
    rCSI 23.06%
    PRS 7.82
  • VIP GABAergic cortical interneuron CL4023016
    CSI 15.85
    rCSI 18.93%
    PRS 7.33
  • corticothalamic-projecting glutamatergic cortical neuron CL4023013
    CSI 15.72
    rCSI 92.54%
    PRS 7.81
  • L2/3 intratelencephalic projecting glutamatergic neuron CL4030059
    CSI 15.44
    rCSI 33.49%
    PRS 6.97
  • mammary gland epithelial cell CL0002327
    CSI 14.9
    rCSI 52.27%
    PRS 23.03
  • promyelocyte CL0000836
    CSI 14.43
    rCSI 20.81%
    PRS 17.68
  • pancreatic D cell CL0000173
    CSI 14.36
    rCSI 14.12%
    PRS 13.82
  • basal cell of prostate epithelium CL0002341
    CSI 14.18
    rCSI 41.03%
    PRS 28.2
  • neuron CL0000540
    CSI 13.43
    rCSI 35.77%
    PRS 10.01
  • common dendritic progenitor CL0001029
    CSI 13.28
    rCSI 16.67%
    PRS 16.18
  • L5/6 near-projecting glutamatergic neuron CL4030067
    CSI 13.09
    rCSI 43.03%
    PRS 6.54
  • transitional stage B cell CL0000818
    CSI 13.05
    rCSI 42.73%
    PRS 35.47
  • peripheral nervous system neuron CL2000032
    CSI 12.55
    rCSI 17.1%
    PRS 11.34
  • H2 horizontal cell CL0004218
    CSI 11.3
    rCSI 56.17%
    PRS 13.84
  • hematopoietic stem cell CL0000037
    CSI 10.74
    rCSI 7.14%
    PRS 15.15
  • endothelial cell of placenta CL0009092
    CSI 10.49
    rCSI 51.7%
    PRS 17.3
  • placental villous trophoblast CL2000060
    CSI 10.37
    rCSI 16.03%
    PRS 11.9
  • elicited macrophage CL0000861
    CSI 10.27
    rCSI 9.43%
    PRS 14.54
  • pulmonary alveolar type 2 cell CL0002063
    CSI 10.27
    rCSI 15.93%
    PRS 19.32
  • retinal rod cell CL0000604
    CSI 10.11
    rCSI 17.81%
    PRS 12.55
  • fraction A pre-pro B cell CL0002045
    CSI 9.98
    rCSI 11.43%
    PRS 26.07
  • H1 horizontal cell CL0004217
    CSI 9.84
    rCSI 38.98%
    PRS 18
  • myeloid lineage restricted progenitor cell CL0000839
    CSI 9.81
    rCSI 50.67%
    PRS 24.97
  • large pre-B-II cell CL0000957
    CSI 9.08
    rCSI 25.92%
    PRS 21.94
  • plasmacytoid dendritic cell, human CL0001058
    CSI 8.83
    rCSI 6.17%
    PRS 13.32
  • CD4-positive, alpha-beta cytotoxic T cell CL0000934
    CSI 8.23
    rCSI 11.31%
    PRS 26.18
  • CD16-positive, CD56-dim natural killer cell, human CL0000939
    CSI 8.2
    rCSI 5.46%
    PRS 33.05
  • intrahepatic cholangiocyte CL0002538
    CSI 7.91
    rCSI 18.97%
    PRS 23.05
  • megakaryocyte CL0000556
    CSI 7.79
    rCSI 33.79%
    PRS 22.82
  • central nervous system neuron CL2000029
    CSI 7.68
    rCSI 56.49%
    PRS 6.48
  • eye photoreceptor cell CL0000287
    CSI 7.39
    rCSI 83.15%
    PRS 31.95
  • retinal cone cell CL0000573
    CSI 7.17
    rCSI 11.54%
    PRS 9.77
  • pulmonary alveolar type 1 cell CL0002062
    CSI 6.97
    rCSI 40.19%
    PRS 16.91
  • syncytiotrophoblast cell CL0000525
    CSI 6.92
    rCSI 19.92%
    PRS 24.67
  • L4 intratelencephalic projecting glutamatergic neuron CL4030063
    CSI 6.23
    rCSI 14.9%
    PRS 6.98
  • lung ciliated cell CL1000271
    CSI 6.16
    rCSI 7.12%
    PRS 9.31
  • M cell of gut CL0000682
    CSI 6.06
    rCSI 6.44%
    PRS 22.59
  • double negative thymocyte CL0002489
    CSI 6.01
    rCSI 4.18%
    PRS 14.88
  • activated CD8-positive, alpha-beta T cell, human CL0001049
    CSI 5.69
    rCSI 9.73%
    PRS 25.33
  • extravillous trophoblast CL0008036
    CSI 5.61
    rCSI 6.94%
    PRS 11.15
  • epithelial cell of lower respiratory tract CL0002632
    CSI 5.58
    rCSI 4.32%
    PRS 12.11
  • T follicular helper cell CL0002038
    CSI 5.57
    rCSI 4.17%
    PRS 20.6
  • neural crest cell CL0011012
    CSI 5.2
    rCSI 4.11%
    PRS 8.73
  • eosinophil CL0000771
    CSI 5.05
    rCSI 33.15%
    PRS 32.76
  • club cell CL0000158
    CSI 4.6
    rCSI 6.74%
    PRS 14.85
  • hematopoietic precursor cell CL0008001
    CSI 4.49
    rCSI 4.62%
    PRS 20.72
  • hepatic stellate cell CL0000632
    CSI 4.31
    rCSI 16.15%
    PRS 10.77
  • invaginating midget bipolar cell CL4033034
    CSI 4.24
    rCSI 25.02%
    PRS 13.26
  • blood vessel smooth muscle cell CL0019018
    CSI 4.17
    rCSI 33.88%
    PRS 13.15
  • lymphoid lineage restricted progenitor cell CL0000838
    CSI 4.11
    rCSI 16%
    PRS 20.83
  • perivascular cell CL4033054
    CSI 4.1
    rCSI 5.61%
    PRS 14.42
  • stem cell CL0000034
    CSI 4.09
    rCSI 3.94%
    PRS 8.75
  • common myeloid progenitor CL0000049
    CSI 4.07
    rCSI 3.29%
    PRS 12.54
  • cerebellar granule cell CL0001031
    CSI 4.07
    rCSI 5.99%
    PRS 11.64
  • transit amplifying cell of colon CL0009011
    CSI 4.05
    rCSI 4.75%
    PRS 14.96
  • caudal ganglionic eminence derived cortical interneuron CL4023064
    CSI 4.04
    rCSI 7.13%
    PRS 7.43
  • class switched memory B cell CL0000972
    CSI 3.9
    rCSI 2.91%
    PRS 21.31
  • double-positive, alpha-beta thymocyte CL0000809
    CSI 3.8
    rCSI 3.87%
    PRS 18.16
  • direct pathway medium spiny neuron CL4023026
    CSI 3.8
    rCSI 90.93%
    PRS 5.75
  • indirect pathway medium spiny neuron CL4023029
    CSI 3.75
    rCSI 90.44%
    PRS 6.63
  • podocyte CL0000653
    CSI 3.7
    rCSI 16.44%
    PRS 12.54
  • duct epithelial cell CL0000068
    CSI 3.7
    rCSI 5.41%
    PRS 13.43
  • intestinal tuft cell CL0019032
    CSI 3.68
    rCSI 5.63%
    PRS 14.55
  • respiratory epithelial cell CL0002368
    CSI 3.68
    rCSI 22.72%
    PRS 41.09
  • myofibroblast cell CL0000186
    CSI 3.64
    rCSI 5.04%
    PRS 18.29
  • epithelial cell of lung CL0000082
    CSI 3.6
    rCSI 2.98%
    PRS 11.99
  • mature B cell CL0000785
    CSI 3.57
    rCSI 3.11%
    PRS 15.68
  • alpha-beta T cell CL0000789
    CSI 3.53
    rCSI 4.14%
    PRS 16.96
  • naive thymus-derived CD8-positive, alpha-beta T cell CL0000900
    CSI 3.52
    rCSI 2.47%
    PRS 32.74
  • secretory cell CL0000151
    CSI 3.44
    rCSI 3.58%
    PRS 13.02
  • melanocyte CL0000148
    CSI 3.35
    rCSI 2.48%
    PRS 11.28
  • thymocyte CL0000893
    CSI 3.33
    rCSI 11.83%
    PRS 39.37
  • activated type II NK T cell CL0000931
    CSI 3.26
    rCSI 3.67%
    PRS 20.33
  • CD4-positive, alpha-beta memory T cell CL0000897
    CSI 3.2
    rCSI 2.3%
    PRS 17.26
  • pancreatic PP cell CL0002275
    CSI 3.19
    rCSI 12.69%
    PRS 22.37
  • mesenchymal stem cell CL0000134
    CSI 3.1
    rCSI 33.93%
    PRS 22.94
  • memory T cell CL0000813
    CSI 3.09
    rCSI 5.95%
    PRS 28.41
  • naive T cell CL0000898
    CSI 3.08
    rCSI 2.14%
    PRS 18.05
  • Cajal-Retzius cell CL0000695
    CSI 3.06
    rCSI 23.97%
    PRS 27.59
  • naive B cell CL0000788
    CSI 2.93
    rCSI 2.51%
    PRS 22.31
  • epithelial cell of urethra CL1000296
    CSI 2.93
    rCSI 73.82%
    PRS 40.16
  • mature NK T cell CL0000814
    CSI 2.8
    rCSI 3.59%
    PRS 49.77
  • chondrocyte CL0000138
    CSI 2.8
    rCSI 4.45%
    PRS 10.9
  • colonocyte CL1000347
    CSI -9.5
    rCSI -13.7%
    PRS 17.4%
  • dopaminergic neuron CL0000700
    CSI -3.8
    rCSI -21.5%
    PRS 5.2%
  • late pro-B cell CL0002048
    CSI -3.6
    rCSI -9.1%
    PRS 36.8%
  • fibroblast of cardiac tissue CL0002548
    CSI -2.9
    rCSI -14.0%
    PRS 8.4%
  • retinal pigment epithelial cell CL0002586
    CSI -2.9
    rCSI -5.8%
    PRS 13.5%
  • lung neuroendocrine cell CL1000223
    CSI -2.5
    rCSI -3.7%
    PRS 14.7%
  • pulmonary capillary endothelial cell CL4028001
    CSI -2.0
    rCSI -3.9%
    PRS 20.2%
  • alveolar adventitial fibroblast CL4028006
    CSI -1.7
    rCSI -2.7%
    PRS 12.7%
  • exhausted T cell CL0011025
    CSI -1.5
    rCSI -25.6%
    PRS 48.5%
  • adventitial cell CL0002503
    CSI -1.3
    rCSI -3.1%
    PRS 19.8%
  • CD14-positive, CD16-positive monocyte CL0002397
    CSI -1.1
    rCSI -1.4%
    PRS 17.8%
  • vein endothelial cell of respiratory system CL4033008
    CSI -0.9
    rCSI -6.0%
    PRS 24.9%
  • inflammatory macrophage CL0000863
    CSI -0.8
    rCSI -1.3%
    PRS 25.5%
  • glioblast CL0000030
    CSI -0.4
    rCSI -0.6%
    PRS 10.9%
  • serous secreting cell CL0000313
    CSI -0.3
    rCSI -1.7%
    PRS 49.7%
  • neural cell CL0002319
    CSI -0.1
    rCSI -0.5%
    PRS 19.3%
  • endothelial cell of uterus CL0009095
    CSI -0.1
    rCSI -0.8%
    PRS 34.5%
  • tracheobronchial serous cell CL0019001
    CSI 0.1
    rCSI 0.2%
    PRS 24.3%
  • regular ventricular cardiac myocyte CL0002131
    CSI 0.1
    rCSI 0.3%
    PRS 9.9%
  • megakaryocyte progenitor cell CL0000553
    CSI 0.1
    rCSI 1.1%
    PRS 36.2%
  • intestinal crypt stem cell of small intestine CL0009017
    CSI 0.1
    rCSI 0.3%
    PRS 16.4%
  • cytotoxic T cell CL0000910
    CSI 0.1
    rCSI 0.6%
    PRS 18.6%
  • CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human CL0001074
    CSI 0.1
    rCSI 1.2%
    PRS 47.4%
  • pre-conventional dendritic cell CL0002010
    CSI 0.1
    rCSI 1.8%
    PRS 40.8%
  • cone retinal bipolar cell CL0000752
    CSI 0.1
    rCSI 1.8%
    PRS 46.9%
  • macroglial cell CL0000126
    CSI 0.1
    rCSI 0.4%
    PRS 17.9%
  • regular atrial cardiac myocyte CL0002129
    CSI 0.1
    rCSI 0.5%
    PRS 13.6%
  • parietal cell CL0000162
    CSI 0.1
    rCSI 1.2%
    PRS 60.5%
  • group 2 innate lymphoid cell CL0001069
    CSI 0.2
    rCSI 0.8%
    PRS 42.4%
  • myeloid dendritic cell CL0000782
    CSI 0.2
    rCSI 0.2%
    PRS 18.7%
  • kidney connecting tubule epithelial cell CL1000768
    CSI 0.2
    rCSI 0.4%
    PRS 9.7%
  • glycinergic amacrine cell CL4030028
    CSI 0.2
    rCSI 0.4%
    PRS 12.5%
  • enterocyte of epithelium of small intestine CL1000334
    CSI 0.2
    rCSI 2.5%
    PRS 31.4%
  • bronchiolar smooth muscle cell CL4033017
    CSI 0.2
    rCSI 2.6%
    PRS 39.4%
  • germinal center B cell CL0000844
    CSI 0.2
    rCSI 0.5%
    PRS 31.4%
  • interstitial cell of Cajal CL0002088
    CSI 0.2
    rCSI 0.2%
    PRS 14.8%
  • ON midget ganglion cell CL4033046
    CSI 0.2
    rCSI 3.8%
    PRS 9.8%
  • hepatocyte CL0000182
    CSI 0.2
    rCSI 0.4%
    PRS 11.9%
  • bronchial goblet cell CL1000312
    CSI 0.2
    rCSI 0.8%
    PRS 27.8%
  • mucus secreting cell CL0000319
    CSI 0.2
    rCSI 0.3%
    PRS 16.4%
  • parietal epithelial cell CL1000452
    CSI 0.2
    rCSI 0.7%
    PRS 10.8%
  • cerebral cortex pyramidal neuron CL4023111
    CSI 0.3
    rCSI 1.6%
    PRS 34.9%
  • differentiation-committed oligodendrocyte precursor CL4023059
    CSI 0.3
    rCSI 0.5%
    PRS 10.4%
  • erythroid progenitor cell CL0000038
    CSI 0.3
    rCSI 1.5%
    PRS 19.6%
  • colon macrophage CL0009038
    CSI 0.3
    rCSI 1.2%
    PRS 26.3%
  • myelocyte CL0002193
    CSI 0.3
    rCSI 1.7%
    PRS 40.3%
  • foveolar cell of stomach CL0002179
    CSI 0.3
    rCSI 0.6%
    PRS 20.5%
  • tracheobronchial smooth muscle cell CL0019019
    CSI 0.3
    rCSI 0.5%
    PRS 16.8%
  • intestinal crypt stem cell of colon CL0009043
    CSI 0.3
    rCSI 2.1%
    PRS 23.3%
  • stromal cell of ovary CL0002132
    CSI 0.3
    rCSI 0.8%
    PRS 20.9%
  • peptic cell CL0000155
    CSI 0.3
    rCSI 2.8%
    PRS 37.2%
  • lung pericyte CL0009089
    CSI 0.3
    rCSI 0.8%
    PRS 15.2%
  • colon goblet cell CL0009039
    CSI 0.3
    rCSI 0.7%
    PRS 19.2%
  • B-2 B cell CL0000822
    CSI 0.3
    rCSI 6.5%
    PRS 60.6%
  • erythroblast CL0000765
    CSI 0.3
    rCSI 0.9%
    PRS 20.9%
  • cardiac muscle cell CL0000746
    CSI 0.3
    rCSI 0.5%
    PRS 9.9%
  • alveolar type 1 fibroblast cell CL4028004
    CSI 0.3
    rCSI 0.4%
    PRS 14.5%
  • type B pancreatic cell CL0000169
    CSI 0.3
    rCSI 0.8%
    PRS 11.8%
  • cardiac neuron CL0010022
    CSI 0.3
    rCSI 1.1%
    PRS 9.1%
  • microcirculation associated smooth muscle cell CL0008035
    CSI 0.4
    rCSI 1.1%
    PRS 14.4%
  • cord blood hematopoietic stem cell CL2000095
    CSI 0.4
    rCSI 7.2%
    PRS 71.4%
  • intermediate monocyte CL0002393
    CSI 0.4
    rCSI 0.6%
    PRS 12.5%
  • type L enteroendocrine cell CL0002279
    CSI 0.4
    rCSI 0.7%
    PRS 25.1%
  • pancreatic epsilon cell CL0005019
    CSI 0.4
    rCSI 1.9%
    PRS 30.3%
  • deuterosomal cell CL4033044
    CSI 0.4
    rCSI 1.4%
    PRS 21.4%
  • myeloid dendritic cell, human CL0001057
    CSI 0.4
    rCSI 2.3%
    PRS 39.7%
  • OFF midget ganglion cell CL4033047
    CSI 0.4
    rCSI 8.5%
    PRS 10.7%
  • CD8-positive, alpha-beta memory T cell, CD45RO-positive CL0001203
    CSI 0.4
    rCSI 0.5%
    PRS 16.9%
  • respiratory goblet cell CL0002370
    CSI 0.5
    rCSI 5.0%
    PRS 24.5%
  • transit amplifying cell CL0009010
    CSI 0.5
    rCSI 0.7%
    PRS 20.7%
  • colon epithelial cell CL0011108
    CSI 0.5
    rCSI 0.5%
    PRS 11.8%
  • mesodermal cell CL0000222
    CSI 0.5
    rCSI 0.6%
    PRS 12.6%
  • T-helper 17 cell CL0000899
    CSI 0.5
    rCSI 0.4%
    PRS 22.4%
  • skeletal muscle satellite cell CL0000594
    CSI 0.5
    rCSI 1.5%
    PRS 40.6%
  • pancreatic stellate cell CL0002410
    CSI 0.5
    rCSI 3.0%
    PRS 19.1%
  • hematopoietic multipotent progenitor cell CL0000837
    CSI 0.5
    rCSI 1.3%
    PRS 20.1%
  • professional antigen presenting cell CL0000145
    CSI 0.5
    rCSI 1.8%
    PRS 46.7%
  • CD14-positive, CD16-negative classical monocyte CL0002057
    CSI 0.5
    rCSI 3.2%
    PRS 28.2%
  • keratocyte CL0002363
    CSI 0.5
    rCSI 1.3%
    PRS 19.0%
  • respiratory basal cell CL0002633
    CSI 0.5
    rCSI 0.6%
    PRS 14.9%
  • amacrine cell CL0000561
    CSI 0.6
    rCSI 1.6%
    PRS 9.9%
  • ON parasol ganglion cell CL4033052
    CSI 0.6
    rCSI 8.1%
    PRS 8.8%
  • pulmonary ionocyte CL0017000
    CSI 0.6
    rCSI 0.7%
    PRS 16.0%
  • choroid plexus epithelial cell CL0000706
    CSI 0.6
    rCSI 0.9%
    PRS 9.8%
  • neuroendocrine cell CL0000165
    CSI 0.6
    rCSI 2.3%
    PRS 26.2%
  • retinal ganglion cell CL0000740
    CSI 0.6
    rCSI 1.3%
    PRS 9.2%
  • kidney loop of Henle thin descending limb epithelial cell CL1001111
    CSI 0.6
    rCSI 0.8%
    PRS 11.8%
  • paneth cell of epithelium of small intestine CL1000343
    CSI 0.6
    rCSI 1.7%
    PRS 19.6%
  • diffuse bipolar 3b cell CL4033030
    CSI 0.6
    rCSI 4.0%
    PRS 12.9%
  • serous secreting cell of bronchus submucosal gland CL4033005
    CSI 0.6
    rCSI 3.4%
    PRS 46.6%
  • kidney loop of Henle thin ascending limb epithelial cell CL1001107
    CSI 0.6
    rCSI 1.6%
    PRS 11.9%
  • brush cell CL0002204
    CSI 0.6
    rCSI 1.2%
    PRS 33.1%
  • basophil CL0000767
    CSI 0.6
    rCSI 1.3%
    PRS 25.7%
  • IgA plasma cell CL0000987
    CSI 0.6
    rCSI 0.7%
    PRS 23.6%
  • forebrain radial glial cell CL0013000
    CSI 0.6
    rCSI 2.1%
    PRS 18.6%
  • IgM plasma cell CL0000986
    CSI 0.7
    rCSI 3.0%
    PRS 55.5%
  • kidney interstitial alternatively activated macrophage CL1000695
    CSI 0.7
    rCSI 1.7%
    PRS 11.7%
  • stratified epithelial cell CL0000079
    CSI 0.7
    rCSI 4.1%
    PRS 49.1%
  • effector memory CD4-positive, alpha-beta T cell CL0000905
    CSI 0.7
    rCSI 0.9%
    PRS 30.5%
  • endocardial cell CL0002350
    CSI 0.7
    rCSI 3.3%
    PRS 16.3%

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

Comma-separated if multiple.
Comma-separated if multiple.

Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [CD47](/details-gene/961), also known as Integrin-Associated Protein (IAP), is a multi-spanning transmembrane protein belonging to the immunoglobulin superfamily. It functions as a critical cell surface receptor involved in a wide array of biological processes, including cell adhesion, migration, apoptosis, and immune regulation. Most notably, [CD47](/details-gene/961) acts as a ligand for signal-regulatory protein alpha (SIRPα), an interaction that transmits a "don't eat me" signal to phagocytic cells, thereby protecting host cells from clearance. The gene's expression profile is remarkably broad, showing high significance across diverse cell types including epithelial, neuronal, and hematopoietic cells, underscoring its fundamental role in self-recognition and tissue homeostasis. Its clinical relevance is significant, particularly in oncology, where its overexpression on tumor cells represents a key mechanism of immune evasion ([OMIM: [601028](https://omim.org/entry/601028)]). ## Cellular Roles and Expression Landscape The expression landscape of [CD47](/details-gene/961) highlights its ubiquitous yet differentially regulated nature. **Overall**, the gene shows the highest significance in non-immune cell types, suggesting a broad role beyond its well-characterized immunological functions. * **Epithelial and Secretory Cells:** The most significant expression is observed in `fallopian tube secretory epithelial cell` ([CL4030006](/details-cell/CL4030006)) and `ciliated epithelial cell` ([CL0000067](/details-cell/CL0000067)), as well as `pancreatic ductal cell` ([CL0002079](/details-cell/CL0002079)) and `pancreatic acinar cell` ([CL0002064](/details-cell/CL0002064)). This is consistent with its original identification as an ovarian tumor marker ([Link](https://pubmed.ncbi.nlm.nih.gov/1394148/)) and suggests a critical role in maintaining the integrity and immune privilege of glandular and mucosal tissues. * **Nervous System:** [CD47](/details-gene/961) is highly significant in multiple neuronal subtypes, including `lamp5 GABAergic cortical interneuron` ([CL4023011](/details-cell/CL4023011)), `L2/3-6 intratelencephalic projecting glutamatergic neuron` ([CL4023040](/details-cell/CL4023040)), and `retina horizontal cell` ([CL0000745](/details-cell/CL0000745)). This pattern suggests a potential role in neuronal self-recognition, synaptic organization, and protection against aberrant microglial phagocytosis during development and homeostasis. * **Myeloid and Hematopoietic Cells:** The gene is also a significant marker for myeloid cells such as `Hofbauer cell` ([CL3000001](/details-cell/CL3000001)) and `CD14-low, CD16-positive monocyte` ([CL0002396](/details-cell/CL0002396)), as well as `megakaryocyte-erythroid progenitor cell` ([CL0000050](/details-cell/CL0000050)). This is in line with its established function in regulating phagocytosis and its role as a receptor for thrombospondin ([Link](https://doi.org/10.1074/jbc.271.1.21)). * **Specificity and Anti-Markers:** Notably, [CD47](/details-gene/961) shows low to negative significance in certain differentiated or specialized cell types, such as `colonocyte` ([CL1000347](/details-cell/CL1000347)), `late pro-B cell` ([CL0002048](/details-cell/CL0002048)), and `exhausted T cell` ([CL0011025](/details-cell/CL0011025)). This suggests its expression is dynamically regulated during cellular differentiation and exhaustion, potentially lowering the threshold for clearance of senescent or terminally differentiated cells. ## Pathways and Molecular Function Functional annotations reveal [CD47](/details-gene/961) as a pleiotropic cell surface molecule with extensive roles in cell-cell communication and immune regulation. * **Immune Checkpoint and Phagocytosis:** The primary function of [CD47](/details-gene/961) is the `Negative regulation of phagocytosis` ([GO:0050765](https://www.ebi.ac.uk/QuickGO/term/GO:0050765)) through its interaction with SIRP family proteins, a key axis in the `Innate immune system` ([R-HSA-168249](https://reactome.org/content/detail/R-HSA-168249)) pathway `Signal regulatory protein family interactions` ([R-HSA-391160](https://reactome.org/content/detail/R-HSA-391160)). However, it is also implicated in the `Positive regulation of phagocytosis` ([GO:0050766](https://www.ebi.ac.uk/QuickGO/term/GO:0050766)) under different contexts, highlighting its complex regulatory roles. * **Cell Adhesion and Migration:** As its alias IAP suggests, [CD47](/details-gene/961) is involved in `Integrin-mediated signaling pathway` ([GO:0007229](https://www.ebi.ac.uk/QuickGO/term/GO:0007229)) and `Heterotypic cell-cell adhesion` ([GO:0034113](https://www.ebi.ac.uk/QuickGO/term/GO:0034113)). It functions as a `Thrombospondin receptor` ([GO:0070053](https://www.ebi.ac.uk/QuickGO/term/GO:0070053)) and engages in `Integrin cell surface interactions` ([R-HSA-216083](https://reactome.org/content/detail/R-HSA-216083)), contributing to processes like `Cell migration` ([GO:0016477](https://www.ebi.ac.uk/QuickGO/term/GO:0016477)) and `Hemostasis` ([R-HSA-109582](https://reactome.org/content/detail/R-HSA-109582)). * **T-Cell Regulation:** Beyond its innate immune function, [CD47](/details-gene/961) participates in adaptive immunity. It has been shown to be involved in the `Positive regulation of t cell activation` ([GO:0050870](https://www.ebi.ac.uk/QuickGO/term/GO:0050870)) through interaction with SIRPβ2 ([Link](https://doi.org/10.1182/blood-2004-07-2823)), while also participating in bidirectional negative regulation of T cells and dendritic cells ([Link](https://doi.org/10.4049/jimmunol.167.5.2547)). * **Inflammatory Signaling:** The gene is linked to the regulation of numerous cytokine pathways, including those for interleukin-1, -6, -10, -12, and TNF, as well as type II interferon ([GO:0071347](https://www.ebi.ac.uk/QuickGO/term/GO:0071347), [GO:0032675](https://www.ebi.ac.uk/QuickGO/term/GO:0032675), [GO:0032653](https://www.ebi.ac.uk/QuickGO/term/GO:0032653), [GO:0032655](https://www.ebi.ac.uk/QuickGO/term/GO:0032655), [GO:0032680](https://www.ebi.ac.uk/QuickGO/term/GO:0032680), [GO:0032649](https://www.ebi.ac.uk/QuickGO/term/GO:0032649)), positioning it as a key modulator of the `Inflammatory response` ([GO:0006954](https://www.ebi.ac.uk/QuickGO/term/GO:0006954)). ## Research Directions The widespread expression and multifaceted functions of [CD47](/details-gene/961) present numerous avenues for future investigation, particularly concerning its roles in tissue-specific contexts and disease. * **Proposed Hypotheses:** 1. Given its high significance in a wide range of cortical neurons (`lamp5 GABAergic cortical interneuron`, `L2/3-6 intratelencephalic projecting glutamatergic neuron`, etc.), it is hypothesized that [CD47](/details-gene/961) serves as a critical "don't prune me" signal during neural development and aging, protecting active and healthy synapses from excessive microglial elimination. Downregulation of [CD47](/details-gene/961) on specific neurons or synapses may be a key signal initiating their targeted removal in neurodegenerative diseases. 2. The exceptionally high expression in `fallopian tube secretory epithelial cell` ([CL4030006](/details-cell/CL4030006)), a cell of origin for many high-grade serous ovarian cancers, suggests that baseline [CD47](/details-gene/961) levels in this tissue provide a pre-existing mechanism for immune evasion that can be co-opted and enhanced during malignant transformation. * **Key Experimental Approach:** To test the second hypothesis, an initial study would use spatial transcriptomics and immunohistochemistry to precisely map [CD47](/details-gene/961) expression in healthy fallopian tube tissue, pre-cancerous lesions, and diagnosed ovarian cancer samples. This would establish if expression is universally high in precursor cells and maintained or amplified in tumors. Subsequently, patient-derived organoids from fallopian tube epithelia could be generated and subjected to CRISPR-Cas9-mediated knockdown of [CD47](/details-gene/961). Co-culture of these knockdown organoids with autologous macrophages, followed by time-lapse imaging and flow cytometry-based phagocytosis assays, would directly test whether reducing [CD47](/details-gene/961) levels increases immune-mediated clearance of these cancer-precursor cells. * **Therapeutic Potential:** [CD47](/details-gene/961) is a major therapeutic target in oncology. Its role as a "don't eat me" signal makes it a prime candidate for **inhibition** to promote anti-tumor immunity. Therapeutic strategies focus on blocking the [CD47](/details-gene/961)-SIRPα interaction using monoclonal antibodies, fusion proteins, or small molecules. This approach is designed to "unmask" cancer cells, allowing them to be recognized and eliminated by phagocytes like macrophages and dendritic cells. Such therapies are in clinical development for a variety of hematological and solid tumors, often in combination with other immunotherapies or standard-of-care agents.

Genular Protein ID: 1440314806

Symbol: CD47_HUMAN

Name: Leukocyte surface antigen CD47

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 1394148

Title: An ovarian tumor marker with homology to vaccinia virus contains an IgV-like region and multiple transmembrane domains.

PubMed ID: 1394148

PubMed ID: 7691831

Title: Molecular cloning of integrin-associated protein: an immunoglobulin family member with multiple membrane spanning domains implicated in alpha-v beta-3-dependent ligand binding.

PubMed ID: 7691831

DOI: 10.1083/jcb.123.2.485

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 7998989

Title: Isolation and characterization of CD47 glycoprotein: a multispanning membrane protein which is the same as integrin-associated protein (IAP) and the ovarian tumour marker OA3.

PubMed ID: 7998989

DOI: 10.1042/bj3040525

PubMed ID: 8550562

Title: Integrin-associated protein is a receptor for the C-terminal domain of thrombospondin.

PubMed ID: 8550562

DOI: 10.1074/jbc.271.1.21

PubMed ID: 10549293

Title: Ubiquitin-related proteins regulate interaction of vimentin intermediate filaments with the plasma membrane.

PubMed ID: 10549293

DOI: 10.1016/s1097-2765(00)80212-9

PubMed ID: 11454874

Title: Normal ligand binding and signaling by CD47 (integrin-associated protein) requires a long range disulfide bond between the extracellular and membrane-spanning domains.

PubMed ID: 11454874

DOI: 10.1074/jbc.m106107200

PubMed ID: 11509594

Title: Bidirectional negative regulation of human T and dendritic cells by CD47 and its cognate receptor signal-regulator protein-alpha: down-regulation of IL-12 responsiveness and inhibition of dendritic cell activation.

PubMed ID: 11509594

DOI: 10.4049/jimmunol.167.5.2547

PubMed ID: 15383453

Title: Adhesion of human T cells to antigen-presenting cells through SIRPbeta2-CD47 interaction costimulates T-cell proliferation.

PubMed ID: 15383453

DOI: 10.1182/blood-2004-07-2823

PubMed ID: 15917238

Title: CD47 augments Fas/CD95-mediated apoptosis.

PubMed ID: 15917238

DOI: 10.1074/jbc.m500922200

PubMed ID: 19004835

Title: Differential interactions of thrombospondin-1, -2, and -4 with CD47 and effects on cGMP signaling and ischemic injury responses.

PubMed ID: 19004835

DOI: 10.1074/jbc.m804860200

PubMed ID: 19159218

Title: Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.

PubMed ID: 19159218

DOI: 10.1021/pr8008012

PubMed ID: 19349973

Title: Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.

PubMed ID: 19349973

DOI: 10.1038/nbt.1532

PubMed ID: 22079249

Title: Integrin-associated protein (CD47) is a putative mediator for soluble fibrinogen interaction with human red blood cells membrane.

PubMed ID: 22079249

DOI: 10.1016/j.bbamem.2011.10.028

PubMed ID: 25944712

Title: N-terminome analysis of the human mitochondrial proteome.

PubMed ID: 25944712

DOI: 10.1002/pmic.201400617

PubMed ID: 27742621

Title: TSP1-CD47 signaling is upregulated in clinical pulmonary hypertension and contributes to pulmonary arterial vasculopathy and dysfunction.

PubMed ID: 27742621

DOI: 10.1093/cvr/cvw218

PubMed ID: 32679764

Title: CD47 Promotes Age-Associated Deterioration in Angiogenesis, Blood Flow and Glucose Homeostasis.

PubMed ID: 32679764

DOI: 10.3390/cells9071695

PubMed ID: 18657508

Title: Paired receptor specificity explained by structures of signal regulatory proteins alone and complexed with CD47.

PubMed ID: 18657508

DOI: 10.1016/j.molcel.2008.05.026

Sequence Information:

  • Length: 323
  • Mass: 35214
  • Checksum: 5D20730A2632D550
  • Sequence:
  • MWPLVAALLL GSACCGSAQL LFNKTKSVEF TFCNDTVVIP CFVTNMEAQN TTEVYVKWKF 
    KGRDIYTFDG ALNKSTVPTD FSSAKIEVSQ LLKGDASLKM DKSDAVSHTG NYTCEVTELT 
    REGETIIELK YRVVSWFSPN ENILIVIFPI FAILLFWGQF GIKTLKYRSG GMDEKTIALL 
    VAGLVITVIV IVGAILFVPG EYSLKNATGL GLIVTSTGIL ILLHYYVFST AIGLTSFVIA 
    ILVIQVIAYI LAVVGLSLCI AACIPMHGPL LISGLSILAL AQLLGLVYMK FVASNQKTIQ 
    PPRKAVEEPL NAFKESKGMM NDE

Genular Protein ID: 272715215

Symbol: A0A0A1TSG4_HUMAN

Name: N/A

UniProtKB Accession Codes:

Database IDs:

Sequence Information:

  • Length: 293
  • Mass: 31872
  • Checksum: E841A2F6696D11F4
  • Sequence:
  • MWPLVAALLL GSACCGSAQL LFNKTKSVEF TFCNDTVVIP CFVTNMEAQN TTEVYVKWKF 
    KGRDIYTFDG ALNKSTVPTD FSSAKIEVSQ LLKGDASLKM DKSDAVSHTG NYTCEVTELT 
    REGETIIELK YRVVSWFSPN ENILIVIFPI FAILLFWGQF GIKTLKYRSG GMDEKTIALL 
    VAGLVITVIV IVGAILFVPG EYSLKNATGL GLIVTSTGIL ILLHYYVFST AIGLTSFVIA 
    ILVIQVIAYI LAVVGLSLCI AACIPMHGPL LISGLSILAL AQLLGLVYMK FVE