Details for: PLSCR2

Gene ID: 57047

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: PLSCR2

Ensembl ID: ENSG00000163746

Description: phospholipid scramblase 2

Cell Significance Landscape

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • kidney loop of Henle thin ascending limb epithelial cell CL1001107
    CSI 2.3
    rCSI 5.95%
    PRS 99.91
  • kidney connecting tubule epithelial cell CL1000768
    CSI 1.9
    rCSI 4.81%
    PRS 99.79

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

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  • Node Color (Target Cell CSI, relative to current network):
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    • High
    • Medium
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    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary Phospholipid scramblase 2 ([PLSCR2](/details-gene/57047)) is a protein-coding gene located on chromosome 3q24. As a member of the phospholipid scramblase family, it functions as a calcium-dependent enzyme that facilitates the bidirectional movement of phospholipids across cell membranes, thereby disrupting lipid asymmetry ([GO:0017128](https://www.ebi.ac.uk/QuickGO/term/GO:0017128), [GO:0005509](https://www.ebi.ac.uk/QuickGO/term/GO:0005509)). Initial characterization identified it as part of a larger family of scramblase proteins ([Link](https://pubmed.ncbi.nlm.nih.gov/10930526/)). While localized to various cellular compartments including the [plasma membrane](/details-go/GO:0005886) and [endoplasmic reticulum](/details-go/GO:0005783), expression analysis indicates that **Overall**, [PLSCR2](/details-gene/57047) shows its most significant expression in specialized epithelial cells of the kidney, particularly within the loop of Henle and connecting tubules, suggesting a specialized role in renal physiology. ## Cellular Roles and Expression Landscape The expression profile of [PLSCR2](/details-gene/57047) points towards a highly specific function within the renal system. **Overall**, its significance is most pronounced in cell types critical for ion and water balance in the kidney. * **Kidney Epithelial Cells:** The highest significance scores are observed in '[kidney loop of Henle thin ascending limb epithelial cell](/details-cell/CL1001107)' (CSI: 2.30) and '[kidney connecting tubule epithelial cell](/details-cell/CL1000768)' (CSI: 1.90). These cells are involved in the fine-tuning of electrolyte and water reabsorption. The prominent role of [PLSCR2](/details-gene/57047) in these specific locations suggests its phospholipid scrambling activity may be integral to maintaining membrane integrity, fluidity, or the function of embedded transport proteins under the demanding osmotic conditions of the renal medulla. The focused expression pattern suggests that [PLSCR2](/details-gene/57047) is not a broadly expressed housekeeping gene but rather a specialist protein whose function is particularly important for the unique physiological environment of specific kidney tubule segments. ## Pathways and Molecular Function The functional annotations for [PLSCR2](/details-gene/57047) center on its role in membrane biology. Its primary molecular function is '[phospholipid scramblase activity](/details-go/GO:0017128)', which is directly involved in the biological process of '[plasma membrane phospholipid scrambling](/details-go/GO:0017121)'. This process neutralizes the charge difference between the inner and outer leaflets of the plasma membrane by redistributing phospholipids, a key step in cellular processes such as apoptosis and blood coagulation. The activity of [PLSCR2](/details-gene/57047) is dependent on '[calcium ion binding](/details-go/GO:0005509)', indicating that its function is tightly regulated by intracellular calcium signaling. This is consistent with the dynamic cellular processes occurring in kidney tubules, where ion fluxes can lead to rapid changes in intracellular calcium concentrations. Furthermore, its annotation for '[protein binding](/details-go/GO:0005515)' suggests it may act as part of a larger protein complex to exert its function. While it is active at the '[plasma membrane](/details-go/GO:0005886)', its presence in the '[endoplasmic reticulum](/details-go/GO:0005783)' and '[nucleoplasm](/details-go/GO:0005654)' suggests potential additional roles in intracellular membrane dynamics or even nuclear functions, which remain less characterized. ## Research Directions The highly specific expression of [PLSCR2](/details-gene/57047) in renal tubular epithelial cells, coupled with its fundamental role in membrane biology, provides a strong basis for further investigation into its physiological and potential pathological roles. **Testable Hypotheses:** 1. **Role in Renal Osmotic Stress Response:** The high expression of [PLSCR2](/details-gene/57047) in the loop of Henle and connecting tubules suggests it is essential for cell survival and function under conditions of high osmotic stress. We hypothesize that [PLSCR2](/details-gene/57047)-mediated phospholipid scrambling is a protective mechanism that helps maintain membrane fluidity and the integrity of ion channels and transporters in the hypertonic environment of the renal medulla. 2. **Nuclear Function in Renal Cells:** The documented nuclear localization of [PLSCR2](/details-gene/57047) suggests a non-canonical function beyond membrane scrambling. We hypothesize that in the nucleus of kidney epithelial cells, [PLSCR2](/details-gene/57047) interacts with chromatin-modifying proteins or transcription factors to regulate the expression of genes involved in ion transport and cell survival in response to physiological cues. **Proposed Experiment:** To test the first hypothesis regarding the role of [PLSCR2](/details-gene/57047) in the renal osmotic stress response, a conditional knockout mouse model could be generated, specifically deleting [PLSCR2](/details-gene/57047) in the epithelial cells of the kidney tubules (e.g., using a Ksp1.3-Cre driver). These mice and their wild-type littermates would be subjected to a dehydration challenge or a high-salt diet to induce osmotic stress. The physiological outcome could be assessed by monitoring urine volume and osmolality, serum electrolyte levels, and markers of kidney injury. Furthermore, primary tubular epithelial cells isolated from these mice could be cultured *in vitro* and exposed to hypertonic media, followed by analysis of cell viability, apoptosis (via Annexin V staining, which detects exposed phosphatidylserine), and the functional activity of key ion transporters. **Therapeutic Potential:** At present, the therapeutic potential of targeting [PLSCR2](/details-gene/57047) is speculative, as no clear disease association has been established. However, if its dysfunction were implicated in genetic or acquired tubulopathies characterized by impaired ion and water balance, it could become a relevant target. Given its highly restricted expression in specific kidney segments, therapeutic modulation of [PLSCR2](/details-gene/57047) could theoretically offer high specificity with minimal off-target effects in other organ systems. As an enzyme, it is a druggable target, though it remains to be determined whether inhibition or activation would be the desired therapeutic strategy.

Genular Protein ID: 1777226342

Symbol: PLS2_HUMAN

Name: Phospholipid scramblase 2

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 10930526

Title: Identification of three new members of the phospholipid scramblase gene family.

PubMed ID: 10930526

DOI: 10.1016/s0005-2736(00)00236-4

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 16641997

Title: The DNA sequence, annotation and analysis of human chromosome 3.

PubMed ID: 16641997

DOI: 10.1038/nature04728

PubMed ID: 15489334

Title: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

PubMed ID: 15489334

DOI: 10.1101/gr.2596504

PubMed ID: 24648509

Title: N-terminal proline-rich domain is required for scrambling activity of human phospholipid scramblases.

PubMed ID: 24648509

DOI: 10.1074/jbc.m113.522953

Sequence Information:

  • Length: 297
  • Mass: 33504
  • Checksum: 58F50C24AB438729
  • Sequence:
  • MRSWNSLFCL NSSRPPGHIV YPKHQAGHTG KQADHLGSQA FYPGRQHDYL VPPAGTAGIP 
    VQNQPGRPEG VPWMPAPPPP LNCPPGLEYL SQIDMILIHQ QIELLEVLFS FESSNMYEIK 
    NSFGQRIYFA AEDTNFCIRN CCGRSRPFTL RITDNVGREV ITLERPLRCN CCCCPCCLQE 
    IEIQAPPGVP VGYVTQTWHP CLTKFTIKNQ KREDVLKISG PCIVCSCIAG VDFEITSLDE 
    QIVVGRISKH WSGFLREAFT DADNFGIQFP RDLDVKMKAV MIGACFLIDY MFFERTR