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Raw Database JSON for Gene ID: 2056

{
    "geneID": 2056,
    "tax": {
        "id": 9606,
        "name": [
            {
                "name": "Homo sapiens Linnaeus 1758"
            },
            {
                "name": "Homo sapiens",
                "type": 0
            },
            {
                "name": "human",
                "type": 4
            }
        ]
    },
    "accession": {
        "gene": [
            "CP068271.2"
        ]
    },
    "genePos": {
        "start": 4669,
        "end": 7901
    },
    "orientation": true,
    "symbol": "EPO",
    "created": {
        "$date": {
            "$numberLong": "1738333348791"
        }
    },
    "crossReference": {
        "enseGeneID": "ENSG00000130427",
        "enseRnaID": [
            "ENST00000252723.3"
        ],
        "enseProtID": [
            "ENSP00000252723.2"
        ]
    },
    "chrom": {
        "pos": "7",
        "type": 1,
        "loc": "7q22.1"
    },
    "desc": "erythropoietin",
    "geneType": 5,
    "mim": [
        {
            "id": 133170,
            "relation": 0
        }
    ],
    "ontology": [
        {
            "id": "R-HSA-162582",
            "term": "Signal Transduction",
            "cat": 10
        },
        {
            "id": "R-HSA-8953897",
            "term": "Cellular responses to stimuli",
            "cat": 10
        },
        {
            "id": "R-HSA-2262752",
            "term": "Cellular responses to stress",
            "cat": 11
        },
        {
            "id": "R-HSA-9006335",
            "term": "Signaling by Erythropoietin",
            "cat": 11
        },
        {
            "id": "R-HSA-1234174",
            "term": "Cellular response to hypoxia",
            "cat": 12
        },
        {
            "id": "R-HSA-9027276",
            "term": "Erythropoietin activates Phosphoinositide-3-kinase (PI3K)",
            "cat": 12
        },
        {
            "id": "R-HSA-9027277",
            "term": "Erythropoietin activates Phospholipase C gamma (PLCG)",
            "cat": 12
        },
        {
            "id": "R-HSA-9027283",
            "term": "Erythropoietin activates STAT5",
            "cat": 12
        },
        {
            "id": "R-HSA-9027284",
            "term": "Erythropoietin activates RAS",
            "cat": 12
        },
        {
            "id": "R-HSA-1234158",
            "term": "Regulation of gene expression by Hypoxia-inducible Factor",
            "cat": 13
        },
        {
            "id": "GO:0005125",
            "term": "cytokine activity",
            "cat": 0
        },
        {
            "id": "GO:0005125",
            "term": "cytokine activity",
            "pubMed": [
                9774108,
                28283061
            ],
            "cat": 0
        },
        {
            "id": "GO:0005128",
            "term": "erythropoietin receptor binding",
            "cat": 0
        },
        {
            "id": "GO:0005128",
            "term": "erythropoietin receptor binding",
            "pubMed": [
                28283061
            ],
            "cat": 0
        },
        {
            "id": "GO:0005179",
            "term": "hormone activity",
            "pubMed": [
                9722506
            ],
            "cat": 0
        },
        {
            "id": "GO:0005515",
            "term": "protein binding",
            "pubMed": [
                9774108,
                26481148,
                29997244,
                33961781
            ],
            "cat": 0
        },
        {
            "id": "GO:0030295",
            "term": "protein kinase activator activity",
            "cat": 0
        },
        {
            "id": "GO:0000122",
            "term": "negative regulation of transcription by RNA polymerase II",
            "pubMed": [
                16497104
            ],
            "cat": 1
        },
        {
            "id": "GO:0001666",
            "term": "response to hypoxia",
            "cat": 1
        },
        {
            "id": "GO:0006953",
            "term": "acute-phase response",
            "cat": 1
        },
        {
            "id": "GO:0007165",
            "term": "signal transduction",
            "pubMed": [
                3838366
            ],
            "cat": 1
        },
        {
            "id": "GO:0007566",
            "term": "embryo implantation",
            "cat": 1
        },
        {
            "id": "GO:0008015",
            "term": "blood circulation",
            "pubMed": [
                3838366
            ],
            "cat": 1
        },
        {
            "id": "GO:0008284",
            "term": "positive regulation of cell population proliferation",
            "cat": 1
        },
        {
            "id": "GO:0008284",
            "term": "positive regulation of cell population proliferation",
            "pubMed": [
                9722506
            ],
            "cat": 1
        },
        {
            "id": "GO:0009651",
            "term": "response to salt stress",
            "cat": 1
        },
        {
            "id": "GO:0010523",
            "term": "negative regulation of calcium ion transport into cytosol",
            "pubMed": [
                14569084
            ],
            "cat": 1
        },
        {
            "id": "GO:0010976",
            "term": "positive regulation of neuron projection development",
            "cat": 1
        },
        {
            "id": "GO:0018105",
            "term": "peptidyl-serine phosphorylation",
            "cat": 1
        },
        {
            "id": "GO:0030218",
            "term": "erythrocyte differentiation",
            "pubMed": [
                15084469
            ],
            "cat": 1
        },
        {
            "id": "GO:0030218",
            "term": "erythrocyte differentiation",
            "pubMed": [
                28283061
            ],
            "cat": 1
        },
        {
            "id": "GO:0032496",
            "term": "response to lipopolysaccharide",
            "cat": 1
        },
        {
            "id": "GO:0033028",
            "term": "myeloid cell apoptotic process",
            "cat": 1
        },
        {
            "id": "GO:0033189",
            "term": "response to vitamin A",
            "cat": 1
        },
        {
            "id": "GO:0033574",
            "term": "response to testosterone",
            "cat": 1
        },
        {
            "id": "GO:0038162",
            "term": "erythropoietin-mediated signaling pathway",
            "cat": 1
        },
        {
            "id": "GO:0038162",
            "term": "erythropoietin-mediated signaling pathway",
            "pubMed": [
                9722506,
                9774108
            ],
            "cat": 1
        },
        {
            "id": "GO:0038162",
            "term": "erythropoietin-mediated signaling pathway",
            "pubMed": [
                28283061
            ],
            "cat": 1
        },
        {
            "id": "GO:0042104",
            "term": "positive regulation of activated T cell proliferation",
            "cat": 1
        },
        {
            "id": "GO:0042541",
            "term": "hemoglobin biosynthetic process",
            "cat": 1
        },
        {
            "id": "GO:0043249",
            "term": "erythrocyte maturation",
            "cat": 1
        },
        {
            "id": "GO:0043627",
            "term": "response to estrogen",
            "cat": 1
        },
        {
            "id": "GO:0045666",
            "term": "positive regulation of neuron differentiation",
            "cat": 1
        },
        {
            "id": "GO:0045860",
            "term": "positive regulation of protein kinase activity",
            "cat": 1
        },
        {
            "id": "GO:0045893",
            "term": "positive regulation of DNA-templated transcription",
            "pubMed": [
                9722506
            ],
            "cat": 1
        },
        {
            "id": "GO:0046579",
            "term": "positive regulation of Ras protein signal transduction",
            "cat": 1
        },
        {
            "id": "GO:0046579",
            "term": "positive regulation of Ras protein signal transduction",
            "pubMed": [
                9722506
            ],
            "cat": 1
        },
        {
            "id": "GO:0048678",
            "term": "response to axon injury",
            "cat": 1
        },
        {
            "id": "GO:0051602",
            "term": "response to electrical stimulus",
            "cat": 1
        },
        {
            "id": "GO:0055093",
            "term": "response to hyperoxia",
            "cat": 1
        },
        {
            "id": "GO:0070374",
            "term": "positive regulation of ERK1 and ERK2 cascade",
            "cat": 1
        },
        {
            "id": "GO:0070555",
            "term": "response to interleukin-1",
            "cat": 1
        },
        {
            "id": "GO:0071474",
            "term": "cellular hyperosmotic response",
            "pubMed": [
                14569084
            ],
            "cat": 1
        },
        {
            "id": "GO:0071548",
            "term": "response to dexamethasone",
            "cat": 1
        },
        {
            "id": "GO:0097696",
            "term": "cell surface receptor signaling pathway via STAT",
            "pubMed": [
                9722506
            ],
            "cat": 1
        },
        {
            "id": "GO:1902219",
            "term": "negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress",
            "pubMed": [
                14569084
            ],
            "cat": 1
        },
        {
            "id": "GO:1902251",
            "term": "negative regulation of erythrocyte apoptotic process",
            "pubMed": [
                14569084
            ],
            "cat": 1
        },
        {
            "id": "GO:2001258",
            "term": "negative regulation of cation channel activity",
            "pubMed": [
                14569084
            ],
            "cat": 1
        },
        {
            "id": "GO:0005576",
            "term": "extracellular region",
            "cat": 2
        },
        {
            "id": "GO:0005615",
            "term": "extracellular space",
            "cat": 2
        },
        {
            "id": "GO:0005615",
            "term": "extracellular space",
            "pubMed": [
                32989016
            ],
            "cat": 2
        },
        {
            "id": "GO:0005615",
            "term": "extracellular space",
            "pubMed": [
                14569084
            ],
            "cat": 2
        },
        {
            "id": "GO:0009986",
            "term": "cell surface",
            "pubMed": [
                14569084
            ],
            "cat": 2
        },
        {
            "id": "GO:0044297",
            "term": "cell body",
            "cat": 2
        }
    ],
    "protein": [
        {
            "symbol": "EPO_HUMAN",
            "accession": [
                "P01588",
                "Q2M2L6",
                "Q549U2",
                "Q9UDZ0",
                "Q9UEZ5",
                "Q9UHA0"
            ],
            "databaseIDs": {
                "NCBI Taxonomy": [
                    "9606"
                ],
                "MIM": [
                    "612623",
                    "617907",
                    "617911",
                    "133170",
                    "612623",
                    "617907",
                    "617911"
                ],
                "EMBL": [
                    "X02158",
                    "X02157",
                    "M11319",
                    "AF053356",
                    "AF202308",
                    "AF202306",
                    "AF202307",
                    "AH009004",
                    "AF202311",
                    "AF202314",
                    "AF202312",
                    "AF202313",
                    "AC009488",
                    "BC093628",
                    "BC111937",
                    "S65458"
                ],
                "CCDS": [
                    "CCDS5705.1"
                ],
                "PIR": [
                    "A01855"
                ],
                "RefSeq": [
                    "NP_000790.2"
                ],
                "PDB": [
                    "1BUY",
                    "1CN4",
                    "1EER"
                ],
                "PDBsum": [
                    "1BUY",
                    "1CN4",
                    "1EER"
                ],
                "AlphaFoldDB": [
                    "P01588"
                ],
                "SMR": [
                    "P01588"
                ],
                "BioGRID": [
                    "108370"
                ],
                "CORUM": [
                    "P01588"
                ],
                "DIP": [
                    "DIP-5731N"
                ],
                "IntAct": [
                    "P01588"
                ],
                "MINT": [
                    "P01588"
                ],
                "STRING": [
                    "9606.ENSP00000252723"
                ],
                "ChEMBL": [
                    "CHEMBL5837"
                ],
                "Allergome": [
                    "11697"
                ],
                "GlyConnect": [
                    "140"
                ],
                "GlyCosmos": [
                    "P01588"
                ],
                "GlyGen": [
                    "P01588"
                ],
                "iPTMnet": [
                    "P01588"
                ],
                "MetOSite": [
                    "P01588"
                ],
                "PhosphoSitePlus": [
                    "P01588"
                ],
                "BioMuta": [
                    "EPO"
                ],
                "DMDM": [
                    "119526"
                ],
                "MassIVE": [
                    "P01588"
                ],
                "PaxDb": [
                    "9606-ENSP00000252723"
                ],
                "PeptideAtlas": [
                    "P01588"
                ],
                "Antibodypedia": [
                    "4151"
                ],
                "DNASU": [
                    "2056"
                ],
                "Ensembl": [
                    "ENST00000252723.3"
                ],
                "KEGG": [
                    "hsa:2056"
                ],
                "MANE-Select": [
                    "ENST00000252723.3"
                ],
                "UCSC": [
                    "uc003uwi.5"
                ],
                "AGR": [
                    "HGNC:3415"
                ],
                "CTD": [
                    "2056"
                ],
                "DisGeNET": [
                    "2056"
                ],
                "GeneCards": [
                    "EPO"
                ],
                "HGNC": [
                    "HGNC:3415"
                ],
                "HPA": [
                    "ENSG00000130427"
                ],
                "MalaCards": [
                    "EPO"
                ],
                "neXtProt": [
                    "NX_P01588"
                ],
                "OpenTargets": [
                    "ENSG00000130427"
                ],
                "Orphanet": [
                    "247511"
                ],
                "PharmGKB": [
                    "PA27833"
                ],
                "VEuPathDB": [
                    "HostDB:ENSG00000130427"
                ],
                "eggNOG": [
                    "ENOG502RXRC"
                ],
                "GeneTree": [
                    "ENSGT00390000017226"
                ],
                "HOGENOM": [
                    "CLU_110946_0_0_1"
                ],
                "InParanoid": [
                    "P01588"
                ],
                "OMA": [
                    "AMEFPRL"
                ],
                "OrthoDB": [
                    "4338688at2759"
                ],
                "PhylomeDB": [
                    "P01588"
                ],
                "TreeFam": [
                    "TF333413"
                ],
                "PathwayCommons": [
                    "P01588"
                ],
                "Reactome": [
                    "R-HSA-1234158",
                    "R-HSA-9006335",
                    "R-HSA-9027276",
                    "R-HSA-9027277",
                    "R-HSA-9027283",
                    "R-HSA-9027284"
                ],
                "SignaLink": [
                    "P01588"
                ],
                "SIGNOR": [
                    "P01588"
                ],
                "BioGRID-ORCS": [
                    "2056"
                ],
                "EvolutionaryTrace": [
                    "P01588"
                ],
                "GeneWiki": [
                    "Erythropoietin"
                ],
                "GenomeRNAi": [
                    "2056"
                ],
                "Pharos": [
                    "P01588"
                ],
                "PRO": [
                    "PR:P01588"
                ],
                "Proteomes": [
                    "UP000005640"
                ],
                "RNAct": [
                    "P01588"
                ],
                "Bgee": [
                    "ENSG00000130427"
                ],
                "ExpressionAtlas": [
                    "P01588"
                ],
                "GO": [
                    "GO:0044297",
                    "GO:0009986",
                    "GO:0005576",
                    "GO:0005615",
                    "GO:0005125",
                    "GO:0005128",
                    "GO:0005179",
                    "GO:0030295",
                    "GO:0006953",
                    "GO:0008015",
                    "GO:0071474",
                    "GO:0007566",
                    "GO:0030218",
                    "GO:0043249",
                    "GO:0038162",
                    "GO:0042541",
                    "GO:0033028",
                    "GO:0010523",
                    "GO:2001258",
                    "GO:1902251",
                    "GO:1902219",
                    "GO:0000122",
                    "GO:0042104",
                    "GO:0008284",
                    "GO:0045893",
                    "GO:0070374",
                    "GO:0045666",
                    "GO:0010976",
                    "GO:0046579",
                    "GO:0042531",
                    "GO:0048678",
                    "GO:0071548",
                    "GO:0051602",
                    "GO:0043627",
                    "GO:0055093",
                    "GO:0001666",
                    "GO:0070555",
                    "GO:0032496",
                    "GO:0009651",
                    "GO:0033574",
                    "GO:0033189",
                    "GO:0007165"
                ],
                "Gene3D": [
                    "1.20.1250.10"
                ],
                "InterPro": [
                    "IPR009079",
                    "IPR019767",
                    "IPR001323",
                    "IPR003013"
                ],
                "PANTHER": [
                    "PTHR10370",
                    "PTHR10370:SF0"
                ],
                "Pfam": [
                    "PF00758"
                ],
                "PIRSF": [
                    "PIRSF001951"
                ],
                "PRINTS": [
                    "PR00272"
                ],
                "SUPFAM": [
                    "SSF47266"
                ],
                "PROSITE": [
                    "PS00817"
                ]
            },
            "citations": [
                {
                    "title": "Isolation and characterization of genomic and cDNA clones of human erythropoietin.",
                    "pubmedID": "3838366",
                    "doi": "10.1038/313806a0"
                },
                {
                    "title": "Cloning and expression of the human erythropoietin gene.",
                    "pubmedID": "3865178",
                    "doi": "10.1073/pnas.82.22.7580"
                },
                {
                    "title": "Large-scale sequencing of two regions in human chromosome 7q22: analysis of 650 kb of genomic sequence around the EPO and CUTL1 loci reveals 17 genes.",
                    "pubmedID": "9799793",
                    "doi": "10.1101/gr.8.10.1060"
                },
                {
                    "title": "The DNA sequence of human chromosome 7.",
                    "pubmedID": "12853948",
                    "doi": "10.1038/nature01782"
                },
                {
                    "title": "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).",
                    "pubmedID": "15489334",
                    "doi": "10.1101/gr.2596504"
                },
                {
                    "title": "Gene expression of mutant erythropoietin in hepatocellular carcinoma.",
                    "pubmedID": "8396923",
                    "doi": "10.1006/bbrc.1993.2104"
                },
                {
                    "title": "Structural characterization of human erythropoietin.",
                    "pubmedID": "3949763",
                    "doi": "10.1016/s0021-9258(17)35756-3"
                },
                {
                    "title": "Isolation of human erythropoietin with monoclonal antibodies.",
                    "pubmedID": "6698989",
                    "doi": "10.1016/s0021-9258(17)43202-9"
                },
                {
                    "title": "Comparative study of the asparagine-linked sugar chains of human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.",
                    "pubmedID": "3346214",
                    "doi": "10.1016/s0021-9258(18)68975-6"
                },
                {
                    "title": "Site-specific glycosylation of human recombinant erythropoietin: analysis of glycopeptides or peptides at each glycosylation site by fast atom bombardment mass spectrometry.",
                    "pubmedID": "3219367",
                    "doi": "10.1021/bi00423a017"
                },
                {
                    "title": "Structures and functional roles of the sugar chains of human erythropoietins.",
                    "pubmedID": "1820196",
                    "doi": "10.1093/glycob/1.4.337"
                },
                {
                    "title": "Sugar profiling proves that human serum erythropoietin differs from recombinant human erythropoietin.",
                    "pubmedID": "11739166",
                    "doi": "10.1182/blood.v98.13.3626"
                },
                {
                    "title": "The endoplasmic reticulum cargo receptor SURF4 facilitates efficient erythropoietin secretion.",
                    "pubmedID": "32989016",
                    "doi": "10.1128/mcb.00180-20"
                },
                {
                    "title": "A Gain-of-function mutation in EPO in familial erythrocytosis.",
                    "pubmedID": "29514032",
                    "doi": "10.1056/nejmoa1709064"
                },
                {
                    "title": "Efficiency of signalling through cytokine receptors depends critically on receptor orientation.",
                    "pubmedID": "9774108",
                    "doi": "10.1038/26773"
                },
                {
                    "title": "NMR structure of human erythropoietin and a comparison with its receptor bound conformation.",
                    "pubmedID": "9783743",
                    "doi": "10.1038/2302"
                },
                {
                    "title": "Promoter polymorphism of the erythropoietin gene in severe diabetic eye and kidney complications.",
                    "pubmedID": "18458324",
                    "doi": "10.1073/pnas.0800454105"
                },
                {
                    "title": "Gene panel sequencing improves the diagnostic work-up of patients with idiopathic erythrocytosis and identifies new mutations.",
                    "pubmedID": "27651169",
                    "doi": "10.3324/haematol.2016.144063"
                },
                {
                    "title": "Functional selectivity in cytokine signaling revealed through a pathogenic EPO mutation.",
                    "pubmedID": "28283061",
                    "doi": "10.1016/j.cell.2017.02.026"
                }
            ],
            "sequence": {
                "length": 193,
                "mass": 21307,
                "checksum": "C91F0E4C26A52033",
                "modified": {
                    "$date": {
                        "$numberLong": "522288000000"
                    }
                },
                "version": 1,
                "sequence": "MGVHECPAWLWLLLSLLSLPLGLPVLGAPPRLICDSRVLERYLLEAKEAENITTGCAEHCSLNENITVPDTKVNFYAWKRMEVGQQAVEVWQGLALLSEAVLRGQALLVNSSQPWEPLQLHVDKAVSGLRSLTTLLRALGAQKEAISPPDAASAAPLRTITADTFRKLFRVYSNFLRGKLKLYTGEACRTGDR"
            },
            "existence": 0,
            "relevance": 1,
            "proteinID": 2759517898
        }
    ],
    "singleCellExpressions": {
        "cellSignificanceIndex": []
    }
}