Details for: CCNP

Gene ID: 79935

Gene Type:  Protein-coding  - A gene that serves as a template for producing a messenger RNA (mRNA) molecule, which is then translated into a functional protein.

Symbol: CCNP

Ensembl ID: ENSG00000105219

Description: cyclin P

Cell Significance Landscape

Associated with

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • kidney loop of Henle thin descending limb epithelial cell CL1001111
    CSI 4.3
    rCSI 6.09%
    PRS 99.92
  • ciliated epithelial cell CL0000067
    CSI 4.3
    rCSI 3.78%
    PRS 99.77
  • kidney loop of Henle thin ascending limb epithelial cell CL1001107
    CSI 2.84
    rCSI 7.33%
    PRS 99.95

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

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  • Node Color (Target Cell CSI, relative to current network):
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    • High
    • Medium
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    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [CCNP](/details-gene/79935) (Cyclin P), also known as CNTD2, is a protein-coding gene located on chromosome 19q13.2. It functions as an atypical cyclin, playing a key role as a regulator of cyclin-dependent protein kinases involved in the [G1/S transition of the mitotic cell cycle](/details-go/GO:0000082). Its protein product is localized to the nucleus, cytoplasm, and microtubule organizing center, indicating its integral role in controlling cell division. **Overall**, expression of [CCNP](/details-gene/79935) is most significant in specialized epithelial cells, particularly [kidney loop of Henle thin descending limb epithelial cells](/details-cell/CL1001111) and [ciliated epithelial cells](/details-cell/CL0000067). Notably, studies have identified [CCNP](/details-gene/79935) as an oncogenic driver in certain malignancies, such as lung and colon cancer, by promoting cell proliferation and migration [Link](https://doi.org/10.1038/s41598-017-10770-8), [Link](https://doi.org/10.1038/s41598-018-30307-x). ## Cellular Roles and Expression Landscape **Overall**, the expression profile of [CCNP](/details-gene/79935) points to a specialized role in epithelial cell biology. The gene shows its highest significance in [kidney loop of Henle thin descending limb epithelial cell](/details-cell/CL1001111) (CSI: 4.30) and [ciliated epithelial cell](/details-cell/CL0000067) (CSI: 4.30), with significant expression also noted in [kidney loop of Henle thin ascending limb epithelial cell](/details-cell/CL1001107) (CSI: 2.84). This distinct expression pattern suggests that [CCNP](/details-gene/79935) is involved in the physiological maintenance and cell turnover of these specific tissues. Its prominence in the kidney's loop of Henle may indicate a function related to the unique metabolic or transport activities of these nephron segments, potentially linking cell cycle control to cellular function. The high significance in ciliated cells, which are critical for mucociliary clearance in the respiratory tract and other organs, suggests a role for [CCNP](/details-gene/79935) in the regeneration and repair of these essential barrier tissues. ## Pathways and Molecular Function [CCNP](/details-gene/79935) is functionally annotated as a core component of the cell cycle regulatory machinery. Its molecular function is defined as [cyclin-dependent protein serine/threonine kinase regulator activity](/details-go/GO:0016538), and it operates within the [cyclin-dependent protein kinase holoenzyme complex](/details-go/GO:0000307). The primary biological process it governs is the [G1/s transition of mitotic cell cycle](/details-go/GO:0000082), a critical checkpoint that commits a cell to DNA replication and division. The protein is broadly distributed within the cell, with localizations in the [nucleus](/details-go/GO:0005634), [cytoplasm](/details-go/GO:0005737), and the [microtubule organizing center](/details-go/GO:0005815). This distribution is consistent with a role in both nuclear events (e.g., transcription factor regulation for S-phase entry) and cytoplasmic processes, while its presence at the microtubule organizing center may imply a function in mitotic spindle assembly. This fundamental role in promoting cell division aligns with findings that its dysregulation can drive oncogenesis in epithelial-derived cancers [Link](https://doi.org/10.1038/s41598-017-10770-8). ## Research Directions The established role of [CCNP](/details-gene/79935) in cell cycle control, combined with its specific expression pattern and implication in cancer, opens several avenues for future investigation. **Testable Hypotheses:** 1. Given its high significance in kidney epithelial cells, dysregulation of [CCNP](/details-gene/79935) in [kidney loop of Henle epithelial cells](/details-cell/CL1001111) may be an early event in the pathogenesis of certain subtypes of renal cell carcinoma, driving hyperproliferation. 2. The high expression of [CCNP](/details-gene/79935) in [ciliated epithelial cells](/details-cell/CL0000067) is critical for the regenerative response of respiratory epithelia following damage (e.g., from viral infection or pollutants), and its impairment could lead to chronic respiratory diseases. 3. [CCNP](/details-gene/79935) may form a functional complex with a specific, yet-to-be-identified cyclin-dependent kinase (CDK) partner in epithelial cells, and this complex could phosphorylate substrates essential for maintaining epithelial cell identity or function, in addition to its role in cell proliferation. **Proposed Experimental Approach:** To test the hypothesis that [CCNP](/details-gene/79935) is a driver of renal cell carcinoma, one could perform a multi-step investigation. First, analyze [CCNP](/details-gene/79935) mRNA and protein expression in a cohort of renal cancer patient samples using qPCR and immunohistochemistry, correlating its levels with tumor grade, stage, and patient survival. Concurrently, using CRISPR-Cas9 to knock out or siRNA to knockdown [CCNP](/details-gene/79935) in renal carcinoma cell lines, one could assess the impact on cell cycle progression via flow cytometry, proliferation using cell counting assays, and migratory capacity using transwell migration assays. **Therapeutic Potential:** Based on its function as a pro-proliferative cyclin and its validated role as an oncogenic driver in lung and colon cancer [Link](https://doi.org/10.1038/s41598-017-10770-8), [Link](https://doi.org/10.1038/s41598-018-30307-x), [CCNP](/details-gene/79935) is a compelling candidate for therapeutic **inhibition**. Its role in regulating CDK activity suggests that small molecule inhibitors designed to specifically disrupt the CCNP-CDK interaction could be a viable strategy. Such an approach could offer a targeted therapy to halt the proliferation of tumors that are dependent on [CCNP](/details-gene/79935) signaling, potentially including specific subtypes of renal, lung, or colon cancer.

Genular Protein ID: 3235100806

Symbol: CCNP_HUMAN

Name: Cyclin N-terminal domain-containing protein 2

UniProtKB Accession Codes:

Database IDs:

Citations:

PubMed ID: 14702039

Title: Complete sequencing and characterization of 21,243 full-length human cDNAs.

PubMed ID: 14702039

DOI: 10.1038/ng1285

PubMed ID: 15057824

Title: The DNA sequence and biology of human chromosome 19.

PubMed ID: 15057824

DOI: 10.1038/nature02399

PubMed ID: 28860486

Title: A systematic analysis of orphan cyclins reveals CNTD2 as a new oncogenic driver in lung cancer.

PubMed ID: 28860486

DOI: 10.1038/s41598-017-10770-8

PubMed ID: 30087414

Title: The atypical cyclin CNTD2 promotes colon cancer cell proliferation and migration.

PubMed ID: 30087414

DOI: 10.1038/s41598-018-30307-x

Sequence Information:

  • Length: 307
  • Mass: 33574
  • Checksum: 9A5E71ADCE0D63E0
  • Sequence:
  • MLVRGRDQGS GSRLGPIVRR WAPRPSPLQS LAASLDAEPS SAAVPDGFPA GPTVSPRRLA 
    RPPGLEEALS ALGLQGEREY AGDIFAEVMV CRVLPLRALP RAVTPEMRAL VVDWLVQVHE 
    YLGLAGDTLY LAVHLLDSYL SAGRVRLHRL QLLGVACLFV ACKMEECVLP EPAFLCLLSA 
    DSFSRAELLR AERRILSRLD FRLHHPGPLL CLGLLAALAG SSPQVMLLAT YFLELSLLEA 
    EAAGWEPGRR AAAALSLAHR LLDGAGSRLQ PELYRCSLGG GSVWGHRSFR DLPSWSFLRS 
    RRMRDNY