Details for: EPS15 AS1

Gene ID: 105378720

Gene Type:  ncRNA (Non-coding RNA)  - A functional RNA molecule that is transcribed from DNA but not translated into a protein. Includes classes like miRNA and lncRNA.

Symbol: EPS15 AS1

Ensembl ID: ENSG00000227070

Description: EPS15 antisense RNA 1

Cell Significance Landscape

Significant Cells

Cell Significance Index (CSI) scores for the chosen context(s)

  • hepatocyte CL0000182
    CSI 3.8
    rCSI 6.8%
    PRS 99.08
  • BEST4+ enteroycte CL4030026
    CSI 3.03
    rCSI 3.76%
    PRS 99.36
  • epithelial cell of proximal tubule CL0002306
    CSI 2.49
    rCSI 6.09%
    PRS 98.64
  • small intestine goblet cell CL1000495
    CSI 2.12
    rCSI 4.65%
    PRS 99.77
  • intestinal crypt stem cell of small intestine CL0009017
    CSI 1.69
    rCSI 4.54%
    PRS 99.82
  • paneth cell of epithelium of small intestine CL1000343
    CSI 1.47
    rCSI 4.11%
    PRS 99.74

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this specific cell.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.

Cell ID: Standard Cell Ontology term used for mapping and comparing cells across experiments. Ensures consistency in analyzing cellular functions across tissues.
Fold Change: Represents the ratio of the current Cell Significance Index to the Cell Significance Index Threshold, indicating how much the gene expression has changed compared to a baseline.
Cell Significance Index: Reflects how strongly a gene is expressed in this cell type. Calculated using techniques like effect size estimation and bootstrapping for reliability.
Network Configuration

Explore relationships of the current gene. Select an Interaction Source: 'ONTOLOGY' for shared pathways (GO/Reactome) or 'STRING' for protein-protein interactions. Further refine by selecting context genes and comparing Cell Significance Index (CSI) scores between baseline and target cell types and their specific contexts.

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Legend:
  • Query Gene
  • Node Color (Target Cell CSI, relative to current network):
    • Very High
    • High
    • Medium
    • Low
    • Very Low
    • CSI N/A
  • Node Size: Proportional to Target Cell CSI magnitude
  • STRING PPI Edge
  • Shared Pathway Edge (ONTOLOGY)

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Other Information

This section provides additional information about the gene, including a description generated by an AI language model and details about associated proteins.

## Summary [EPS15 AS1](/details-gene/105378720) is a non-coding antisense RNA (ncRNA), designated EPS15 antisense RNA 1, located on human chromosome 1p32.3. Expression data indicates that this gene is a significant marker for highly specialized epithelial cell types involved in metabolic, absorptive, and secretory functions. Its prominence in [hepatocytes](/details-cell/CL0000182), intestinal enterocytes, and kidney proximal tubule cells suggests a role in regulating fundamental cellular processes within these vital organs. As an antisense transcript, its primary function is likely related to the post-transcriptional regulation of the `EPS15` gene, a key component of the endocytic machinery. ## Cellular Roles and Expression Landscape **Overall**, the expression profile of [EPS15 AS1](/details-gene/105378720) points to a specialized role in metabolically active epithelial tissues. The gene shows its highest significance in [hepatocytes](/details-cell/CL0000182) (CSI: 3.80), the primary functional cells of the liver responsible for metabolism and detoxification. This pattern of high expression extends to the gastrointestinal tract and kidneys. It is a key marker in several intestinal epithelial cell populations, including [BEST4+ enteroycytes](/details-cell/CL4030026) (CSI: 3.03), [small intestine goblet cells](/details-cell/CL1000495) (CSI: 2.12), [intestinal crypt stem cells of the small intestine](/details-cell/CL0009017) (CSI: 1.69), and [paneth cells of the epithelium of small intestine](/details-cell/CL1000343) (CSI: 1.47). This widespread significance across the intestinal epithelium suggests its involvement in processes ranging from nutrient absorption to mucosal defense and epithelial self-renewal. Furthermore, its notable expression in the [epithelial cell of the proximal tubule](/details-cell/CL0002306) (CSI: 2.49) in the kidney highlights a potential role in the critical process of solute reabsorption. Collectively, the data suggests that [EPS15 AS1](/details-gene/105378720) is a specific marker for epithelial cells that are characterized by high rates of protein trafficking, secretion, and endocytosis. ## Pathways and Molecular Function As a non-coding antisense RNA, the primary molecular function of [EPS15 AS1](/details-gene/105378720) is presumed to be the regulation of its sense-strand counterpart, the `EPS15` (Epidermal growth factor receptor substrate 15) gene. `EPS15` is a well-characterized protein that plays a crucial role in the early stages of clathrin-mediated endocytosis, a fundamental process for the internalization of receptors, nutrients, and pathogens. This function is highly consistent with the cellular contexts where [EPS15 AS1](/details-gene/105378720) is most significant. [Hepatocytes](/details-cell/CL0000182), intestinal [enterocytes](/details-cell/CL4030026), and [kidney proximal tubule cells](/details-cell/CL0002306) all depend on robust endocytic machinery for essential functions such as lipoprotein uptake, nutrient absorption, and reabsorption of filtered proteins from urine. Therefore, [EPS15 AS1](/details-gene/105378720) may act as a fine-tuner of endocytic capacity in these tissues by modulating the expression of `EPS15`. ## Research Directions The specific expression pattern of [EPS15 AS1](/details-gene/105378720) in key metabolic organs positions it as a potential player in various pathologies, including liver disease, intestinal disorders, and kidney dysfunction. Based on its cellular expression and putative function, several testable hypotheses can be proposed: 1. Dysregulation of [EPS15 AS1](/details-gene/105378720) in [hepatocytes](/details-cell/CL0000182) alters `EPS15` expression, leading to impaired endocytosis of growth factor receptors (e.g., EGFR) and contributing to the pathogenesis of metabolic-associated fatty liver disease (MAFLD) or hepatocellular carcinoma. 2. In the gut, [EPS15 AS1](/details-gene/105378720) is crucial for maintaining intestinal epithelial barrier integrity by regulating endocytic pathways in enterocytes and stem cells. Its altered expression could be a contributing factor in inflammatory bowel disease (IBD) or impact epithelial regeneration. To investigate the most compelling of these hypotheses—its role in liver pathology—a clear experimental path can be outlined. To test the role of [EPS15 AS1](/details-gene/105378720) in hepatocyte function, one could utilize antisense oligonucleotides (ASOs) to specifically knock down its expression in a human hepatocyte cell line (e.g., HepG2). The direct impact on `EPS15` mRNA and protein levels could be confirmed by RT-qPCR and Western blotting. Functional readouts, such as measuring the internalization rate of labeled transferrin or EGF, would directly assess changes in clathrin-mediated endocytosis. **Therapeutic Potential:** As a non-coding RNA with a tissue-restricted expression profile, [EPS15 AS1](/details-gene/105378720) presents a promising candidate for RNA-targeted therapies, such as ASOs or siRNAs. Such therapies could offer high specificity for diseases of the liver, intestine, or kidney. Given that antisense transcripts often negatively regulate their sense counterparts, therapeutic **inhibition** of [EPS15 AS1](/details-gene/105378720) might be a strategy to increase `EPS15` levels, which could be beneficial in conditions where endocytic function is pathologically reduced. However, a detailed understanding of its precise regulatory mechanism is required before its potential as a therapeutic target can be fully evaluated.